Strain Fitness in Sphingobium sp. HT1-2 around GFF5245

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,239,822	+		GFF5244	0.53	+1.0
5,239,822	+		GFF5244	0.53	-0.3
5,239,827	+		GFF5244	0.53	-0.6
5,239,830	-		GFF5244	0.54	-0.7
5,239,842	-		GFF5244	0.54	-2.1
5,239,861	-		GFF5244	0.56	-2.0
5,239,861	-		GFF5244	0.56	-1.0
5,239,866	-		GFF5244	0.56	-1.1
5,239,874	-		GFF5244	0.57	+0.7
5,239,927	+		GFF5244	0.60	+0.2
5,239,934	+		GFF5244	0.61	+0.1
5,239,964	+		GFF5244	0.63	-1.3
5,239,964	+		GFF5244	0.63	-1.0
5,239,971	+		GFF5244	0.64	+0.0
5,239,971	+		GFF5244	0.64	+0.2
5,239,971	+		GFF5244	0.64	-0.8
5,239,971	+		GFF5244	0.64	-1.9
5,239,971	+		GFF5244	0.64	-1.5
5,239,972	-		GFF5244	0.64	-1.6
5,239,972	-		GFF5244	0.64	-0.4
5,239,977	-		GFF5244	0.64	+0.2
5,239,979	-		GFF5244	0.64	-1.0
5,239,994	+		GFF5244	0.65	+1.2
5,239,998	+		GFF5244	0.65	-0.8
5,240,006	-		GFF5244	0.66	-1.4
5,240,032	+		GFF5244	0.68	-0.5
5,240,035	+		GFF5244	0.68	+0.4
5,240,035	+		GFF5244	0.68	+0.1
5,240,035	+		GFF5244	0.68	+1.3
5,240,035	+		GFF5244	0.68	-0.5
5,240,035	+		GFF5244	0.68	-1.0
5,240,035	+		GFF5244	0.68	-1.6
5,240,035	+		GFF5244	0.68	+0.4
5,240,040	-		GFF5244	0.68	+0.4
5,240,040	-		GFF5244	0.68	-0.2
5,240,043	-		GFF5244	0.69	+0.7
5,240,043	-		GFF5244	0.69	+0.8
5,240,043	-		GFF5244	0.69	-0.3
5,240,043	-		GFF5244	0.69	-0.0
5,240,048	-		GFF5244	0.69	+0.6
5,240,052	+		GFF5244	0.69	-0.1
5,240,052	+		GFF5244	0.69	+0.1
5,240,052	+		GFF5244	0.69	+0.1
5,240,052	+		GFF5244	0.69	+0.8
5,240,052	+		GFF5244	0.69	-0.4
5,240,060	-		GFF5244	0.70	-0.6
5,240,060	-		GFF5244	0.70	-1.3
5,240,060	-		GFF5244	0.70	+1.4
5,240,060	-		GFF5244	0.70	-2.1
5,240,060	-		GFF5244	0.70	-0.0
5,240,062	+		GFF5244	0.70	+0.6
5,240,075	-		GFF5244	0.71	+0.8
5,240,077	+		GFF5244	0.71	+0.1
5,240,077	+		GFF5244	0.71	-0.0
5,240,077	+		GFF5244	0.71	-1.5
5,240,077	+		GFF5244	0.71	+0.7
5,240,084	-		GFF5244	0.72	+0.9
5,240,085	-		GFF5244	0.72	+1.5
5,240,085	-		GFF5244	0.72	-1.9
5,240,085	-		GFF5244	0.72	-1.0
5,240,103	+		GFF5244	0.73	-0.6
5,240,103	+		GFF5244	0.73	-0.7
5,240,111	-		GFF5244	0.73	-0.5
5,240,115	+		GFF5244	0.74	-0.0
5,240,115	+		GFF5244	0.74	-0.3
5,240,115	+		GFF5244	0.74	-0.7
5,240,115	+		GFF5244	0.74	+0.2
5,240,151	+		GFF5244	0.76	+0.7
5,240,158	+		GFF5244	0.77	+0.9
5,240,198	-		GFF5244	0.80	-0.5
5,240,200	+		GFF5244	0.80	-0.3
5,240,200	-		GFF5244	0.80	+0.2
5,240,215	+		GFF5244	0.81	-1.7
5,240,215	+		GFF5244	0.81	+1.6
5,240,219	-		GFF5244	0.81	-0.5
5,240,237	+		GFF5244	0.82	-0.3
5,240,239	+		GFF5244	0.83	-0.1
5,240,244	+		GFF5244	0.83	-0.2
5,240,244	+		GFF5244	0.83	+0.6
5,240,244	+		GFF5244	0.83	+0.2
5,240,244	+		GFF5244	0.83	-1.7
5,240,244	+		GFF5244	0.83	+0.2
5,240,244	+		GFF5244	0.83	-0.9
5,240,244	+		GFF5244	0.83	-2.3
5,240,252	-		GFF5244	0.83	-0.7
5,240,252	-		GFF5244	0.83	+0.1
5,240,252	-		GFF5244	0.83	+0.1
5,240,252	-		GFF5244	0.83	-1.2
5,240,252	-		GFF5244	0.83	-1.4
5,240,252	-		GFF5244	0.83	-0.9
5,240,252	-		GFF5244	0.83	+0.4
5,240,252	-		GFF5244	0.83	-0.9
5,240,267	+		GFF5244	0.85	+0.4
5,240,267	+		GFF5244	0.85	-1.0
5,240,267	+		GFF5244	0.85	+0.1
5,240,267	+		GFF5244	0.85	+0.2
5,240,275	-		GFF5244	0.85	-0.0
5,240,275	-		GFF5244	0.85	+0.2
5,240,298	+		GFF5244	0.87	-0.6
5,240,306	-		GFF5244	0.87	+0.1
5,240,307	+		GFF5244	0.87	-0.2
5,240,307	+		GFF5244	0.87	+0.5
5,240,307	+		GFF5244	0.87	+0.7
5,240,307	+		GFF5244	0.87	-1.1
5,240,307	+		GFF5244	0.87	-0.2
5,240,313	+		GFF5244	0.88	-1.6
5,240,313	+		GFF5244	0.88	-1.7
5,240,313	+		GFF5244	0.88	+0.7
5,240,315	-		GFF5244	0.88	+0.7
5,240,315	-		GFF5244	0.88	-0.9
5,240,315	-		GFF5244	0.88	-2.0
5,240,319	-		GFF5244	0.88	-0.0
5,240,321	-		GFF5244	0.88	-0.6
5,240,326	+		GFF5244	0.89	-1.0
5,240,331	+		GFF5244	0.89	-0.8
5,240,331	+		GFF5244	0.89	-0.1
5,240,336	+		GFF5244	0.89	-0.9
5,240,336	+		GFF5244	0.89	-1.0
5,240,339	-		GFF5244	0.90	-0.5
5,240,339	-		GFF5244	0.90	-0.2
5,240,344	-				-2.0
5,240,366	+				-0.3
5,240,379	-				-0.8
5,240,401	+				-0.4
5,240,401	+				-1.2
5,240,401	+				+0.2
5,240,409	-				-0.4
5,240,414	+				+0.5
5,240,414	+				-0.2
5,240,414	+				+1.2
5,240,414	+				-2.2
5,240,414	+				+0.7
5,240,422	-				-0.5
5,240,440	+				+0.0
5,240,448	-				+0.6
5,240,463	+				-1.6
5,240,463	+				-2.0
5,240,496	+				-0.1
5,240,496	+				+0.2
5,240,504	-				-1.0
5,240,518	+				-0.2
5,240,570	+				-0.0
5,240,591	+				-0.0
5,240,591	+				-0.6
5,240,591	+				-0.5
5,240,591	+				-0.6
5,240,591	+				-1.8
5,240,591	+				-0.2
5,240,591	+				-0.8
5,240,599	-				+0.3
5,240,599	-				-0.3
5,240,599	-				-0.5
5,240,599	-				-0.2
5,240,614	-				-1.7
5,240,625	+				-0.9
5,240,625	+				-1.3
5,240,633	-				-1.5
5,240,633	-				-0.1
5,240,633	-				-1.0
5,240,660	+				-0.1
5,240,660	+				-0.1
5,240,660	+				-0.0
5,240,660	+				-0.1
5,240,660	+				-1.0
5,240,660	+				+1.2
5,240,660	+				+0.3
5,240,660	+				-0.0
5,240,660	+				-0.5
5,240,661	-				+0.1
5,240,668	-				-0.9
5,240,668	-				+0.7
5,240,668	-				-1.1
5,240,668	-				-0.3
5,240,668	-				+0.9
5,240,668	-				+0.5
5,240,668	-				+0.6
5,240,668	-				-0.4
5,240,668	-				-1.0
5,240,669	+				+0.5
5,240,692	+				-0.0
5,240,695	-				-0.6
5,240,697	+				-1.1
5,240,697	+				+0.6
5,240,697	+				-0.0
5,240,705	+				-0.2
5,240,705	-				-1.8
5,240,705	-				+0.1
5,240,713	-				-0.8
5,240,741	+				+0.1
5,240,749	-				-2.3
5,240,751	-				-0.6
5,240,784	+				-0.2
5,240,876	-				-0.1
5,240,909	+				-1.0
5,240,917	-				-1.5
5,240,917	-				+0.2
5,240,942	+		GFF5245	0.11	+0.4
5,240,953	+		GFF5245	0.12	-0.5
5,240,970	+		GFF5245	0.13	-1.2
5,240,970	+		GFF5245	0.13	-0.6
5,240,975	+		GFF5245	0.14	-1.1
5,240,975	+		GFF5245	0.14	-1.6
5,240,975	+		GFF5245	0.14	+0.1
5,240,975	+		GFF5245	0.14	-0.2
5,240,978	-		GFF5245	0.14	-0.8
5,240,978	-		GFF5245	0.14	+0.4
5,240,983	-		GFF5245	0.14	-0.0
5,240,983	-		GFF5245	0.14	+0.2
5,240,983	-		GFF5245	0.14	+1.4
5,240,983	-		GFF5245	0.14	+0.6
5,241,013	+		GFF5245	0.17	-0.6
5,241,013	+		GFF5245	0.17	-1.6
5,241,013	+		GFF5245	0.17	-0.8
5,241,021	-		GFF5245	0.18	-2.0
5,241,022	-		GFF5245	0.18	+0.4
5,241,032	+		GFF5245	0.19	-1.3
5,241,039	+		GFF5245	0.19	-0.3
5,241,039	+		GFF5245	0.19	-0.8
5,241,040	-		GFF5245	0.19	-1.1
5,241,068	+		GFF5245	0.22	-0.0
5,241,085	+		GFF5245	0.23	-2.1
5,241,106	-		GFF5245	0.25	-0.1
5,241,122	+		GFF5245	0.27	+0.7
5,241,122	+		GFF5245	0.27	-1.4
5,241,122	+		GFF5245	0.27	-1.0
5,241,122	+		GFF5245	0.27	+0.9
5,241,122	+		GFF5245	0.27	+0.6
5,241,122	+		GFF5245	0.27	-0.3
5,241,122	+		GFF5245	0.27	-1.4
5,241,122	+		GFF5245	0.27	+0.8
5,241,122	+		GFF5245	0.27	-1.1
5,241,122	+		GFF5245	0.27	-0.1
5,241,122	+		GFF5245	0.27	-1.2
5,241,122	+		GFF5245	0.27	+0.1
5,241,122	+		GFF5245	0.27	-0.7
5,241,122	+		GFF5245	0.27	+0.1
5,241,128	+		GFF5245	0.27	+1.2
5,241,130	-		GFF5245	0.27	-1.5
5,241,130	-		GFF5245	0.27	-0.1
5,241,130	-		GFF5245	0.27	-0.2
5,241,130	-		GFF5245	0.27	-0.4
5,241,130	-		GFF5245	0.27	-0.1
5,241,130	-		GFF5245	0.27	-1.9
5,241,130	-		GFF5245	0.27	-1.3
5,241,130	-		GFF5245	0.27	-0.2
5,241,130	-		GFF5245	0.27	+1.9
5,241,130	-		GFF5245	0.27	+0.5
5,241,130	-		GFF5245	0.27	-1.2
5,241,132	+		GFF5245	0.27	+0.5
5,241,136	-		GFF5245	0.28	-0.5
5,241,141	-		GFF5245	0.28	-0.4
5,241,151	-		GFF5245	0.29	-0.1
5,241,153	+		GFF5245	0.29	-0.9
5,241,166	-		GFF5245	0.30	+0.1
5,241,173	+		GFF5245	0.31	+0.1
5,241,181	+		GFF5245	0.32	-0.5
5,241,270	+		GFF5245	0.39	-0.0
5,241,280	+		GFF5245	0.40	+1.0
5,241,385	-		GFF5245	0.49	-1.7
5,241,385	-		GFF5245	0.49	-1.1
5,241,392	+		GFF5245	0.50	-0.2
5,241,393	+		GFF5245	0.50	-0.5
5,241,393	+		GFF5245	0.50	-1.1
5,241,393	+		GFF5245	0.50	-1.6
5,241,393	+		GFF5245	0.50	-0.1
5,241,398	+		GFF5245	0.51	-0.0
5,241,400	-		GFF5245	0.51	-0.8
5,241,421	+		GFF5245	0.53	+0.6
5,241,421	+		GFF5245	0.53	-0.5
5,241,424	+		GFF5245	0.53	-0.6
5,241,427	-		GFF5245	0.53	-1.6
5,241,429	-		GFF5245	0.53	+0.9
5,241,462	+		GFF5245	0.56	-1.0
5,241,497	-		GFF5245	0.59	-1.1
5,241,522	+		GFF5245	0.61	+0.7
5,241,522	+		GFF5245	0.61	-1.1
5,241,522	+		GFF5245	0.61	-0.8
5,241,522	+		GFF5245	0.61	+0.2
5,241,522	+		GFF5245	0.61	-3.2
5,241,522	+		GFF5245	0.61	-0.0
5,241,522	+		GFF5245	0.61	-1.6
5,241,522	+		GFF5245	0.61	-0.1
5,241,522	+		GFF5245	0.61	-2.5
5,241,530	-		GFF5245	0.62	+0.5
5,241,530	-		GFF5245	0.62	-0.8
5,241,530	-		GFF5245	0.62	-0.6
5,241,530	-		GFF5245	0.62	+1.2
5,241,530	-		GFF5245	0.62	+0.7
5,241,530	-		GFF5245	0.62	-0.6
5,241,530	-		GFF5245	0.62	+1.2
5,241,530	-		GFF5245	0.62	-2.9
5,241,530	-		GFF5245	0.62	-0.7
5,241,530	-		GFF5245	0.62	-0.7
5,241,535	+		GFF5245	0.62	+0.4
5,241,535	+		GFF5245	0.62	-1.6
5,241,543	-		GFF5245	0.63	-2.0
5,241,552	+		GFF5245	0.64	-1.2
5,241,560	-		GFF5245	0.65	-1.1
5,241,560	-		GFF5245	0.65	+0.9
5,241,561	+		GFF5245	0.65	-0.1
5,241,562	+		GFF5245	0.65	+0.7
5,241,562	+		GFF5245	0.65	+0.1
5,241,570	+		GFF5245	0.66	-0.6
5,241,571	+		GFF5245	0.66	-1.1
5,241,578	-		GFF5245	0.66	+0.8
5,241,584	+		GFF5245	0.67	-0.0
5,241,603	+		GFF5245	0.68	+0.8
5,241,603	+		GFF5245	0.68	-1.2
5,241,611	-		GFF5245	0.69	+0.3
5,241,611	-		GFF5245	0.69	-2.4
5,241,611	-		GFF5245	0.69	-0.1
5,241,655	+		GFF5245	0.73	-0.2
5,241,655	+		GFF5245	0.73	-2.4
5,241,658	-		GFF5245	0.73	-2.3
5,241,668	-		GFF5245	0.74	-1.0
5,241,669	+		GFF5245	0.74	-0.8
5,241,695	-		GFF5245	0.76	-1.4
5,241,695	-		GFF5245	0.76	-1.0
5,241,695	-		GFF5245	0.76	+0.1
5,241,708	+		GFF5245	0.78	-0.8
5,241,708	+		GFF5245	0.78	-1.0
5,241,708	+		GFF5245	0.78	-0.0
5,241,708	+		GFF5245	0.78	-1.3
5,241,708	+		GFF5245	0.78	-1.0
5,241,708	+		GFF5245	0.78	-0.3
5,241,708	+		GFF5245	0.78	+0.8
5,241,716	-		GFF5245	0.78	+1.1
5,241,716	-		GFF5245	0.78	+0.8
5,241,716	-		GFF5245	0.78	-1.5
5,241,758	+		GFF5245	0.82	-0.6
5,241,773	+		GFF5245	0.83	-1.2
5,241,778	+		GFF5245	0.84	-0.2
5,241,778	+		GFF5245	0.84	-0.8
5,241,778	+		GFF5245	0.84	-0.8
5,241,798	+		GFF5245	0.85	+0.3
5,241,881	+				-0.2
5,241,889	-				-1.4
5,241,889	-				-2.2
5,241,933	-				-0.3
5,241,933	-				-0.8
5,242,195	-		GFF5246	0.66	-0.7
5,242,266	-				-0.8
5,242,266	-				-1.4
5,242,266	-				-2.2
5,242,266	-				-0.9
5,242,266	-				+0.2
5,242,266	-				-2.7
5,242,266	-				+0.2
5,242,266	-				-2.8
5,242,266	-				-0.4
5,242,266	-				-1.6
5,242,266	-				-1.0
5,242,266	-				-1.0
5,242,266	-				-3.3
5,242,266	-				+0.2
5,242,266	-				-0.3
5,242,266	-				-1.4
5,242,266	-				-1.6
5,242,266	-				-1.2
5,242,266	-				-2.4
5,242,266	-				-0.8
5,242,393	+				+0.2
5,242,402	+				-1.5
5,242,422	+				-1.5
5,242,424	+				-1.0
5,242,425	+				-1.1
5,242,425	+				-1.5
5,242,425	+				-1.6
5,242,451	+				+0.6
5,242,451	+				-0.2
5,242,451	+				-0.8
5,242,459	-				-0.1
5,242,460	-				-0.8
5,242,466	-				+0.9
5,242,471	-				-1.0
5,242,476	-				-0.8
5,242,490	+				-0.9
5,242,490	+				-2.0
5,242,492	+				-0.6
5,242,497	+				-1.8
5,242,498	-				-1.1
5,242,504	+				-0.9
5,242,505	-				-1.8
5,242,520	-				-2.1
5,242,524	-				-0.6
5,242,524	-				-1.0
5,242,527	-				-1.6
5,242,534	-				-1.7
5,242,544	-				-1.0
5,242,613	+				-0.9
5,242,613	+				-1.1
5,242,613	+				-1.0
5,242,613	+				-1.0
5,242,621	-				-1.3
5,242,622	-				-0.6
5,242,623	+				-0.4
5,242,623	+				-1.0
5,242,628	+				-2.2
5,242,629	+				-2.4
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5,242,631	-				-0.8
5,242,632	-				-0.6
5,242,632	-				-1.9
5,242,632	-				-1.6
5,242,634	+				-0.2
5,242,642	-				+0.8
5,242,652	-				-0.8
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5,242,875	-		GFF5247	0.25	-3.1
5,242,880	+		GFF5247	0.25	-1.3
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5,242,911	-		GFF5247	0.28	-1.9
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5,242,913	+		GFF5247	0.28	-2.1
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5,242,934	+		GFF5247	0.29	-1.2
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5,242,964	-		GFF5247	0.31	-0.9