Strain Fitness in Sphingobium sp. HT1-2 around GFF5170

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,160,504	+		GFF5169	0.19	-1.2
5,160,504	+		GFF5169	0.19	-1.5
5,160,512	-		GFF5169	0.19	-0.9
5,160,512	-		GFF5169	0.19	-0.6
5,160,512	-		GFF5169	0.19	-0.2
5,160,512	-		GFF5169	0.19	-0.5
5,160,532	+		GFF5169	0.21	+0.2
5,160,532	+		GFF5169	0.21	-0.0
5,160,532	+		GFF5169	0.21	-2.3
5,160,532	+		GFF5169	0.21	-1.4
5,160,540	-		GFF5169	0.22	-0.3
5,160,540	-		GFF5169	0.22	+0.3
5,160,540	-		GFF5169	0.22	-1.9
5,160,545	-		GFF5169	0.22	-0.7
5,160,565	+		GFF5169	0.24	+0.6
5,160,565	+		GFF5169	0.24	-0.2
5,160,565	+		GFF5169	0.24	+0.8
5,160,573	-		GFF5169	0.25	-0.4
5,160,573	-		GFF5169	0.25	-2.4
5,160,573	-		GFF5169	0.25	-1.7
5,160,575	-		GFF5169	0.25	-0.0
5,160,634	+		GFF5169	0.30	-1.3
5,160,634	+		GFF5169	0.30	+0.5
5,160,642	-		GFF5169	0.30	-1.7
5,160,642	-		GFF5169	0.30	-1.9
5,160,642	-		GFF5169	0.30	-2.0
5,160,644	+		GFF5169	0.31	-0.6
5,160,644	+		GFF5169	0.31	+0.1
5,160,652	-		GFF5169	0.31	-0.5
5,160,657	+		GFF5169	0.32	-0.4
5,160,657	+		GFF5169	0.32	-0.4
5,160,658	+		GFF5169	0.32	-1.0
5,160,658	+		GFF5169	0.32	+0.5
5,160,659	+		GFF5169	0.32	-1.4
5,160,659	+		GFF5169	0.32	-1.1
5,160,659	+		GFF5169	0.32	-0.3
5,160,659	+		GFF5169	0.32	+0.7
5,160,665	-		GFF5169	0.32	-1.5
5,160,667	-		GFF5169	0.33	-1.0
5,160,667	-		GFF5169	0.33	+1.0
5,160,667	-		GFF5169	0.33	-0.7
5,160,667	-		GFF5169	0.33	+1.6
5,160,683	+		GFF5169	0.34	-1.5
5,160,683	+		GFF5169	0.34	-0.9
5,160,685	+		GFF5169	0.34	-0.2
5,160,685	+		GFF5169	0.34	-1.1
5,160,690	+		GFF5169	0.35	-1.4
5,160,690	+		GFF5169	0.35	-0.7
5,160,690	+		GFF5169	0.35	+0.2
5,160,690	+		GFF5169	0.35	-1.3
5,160,690	+		GFF5169	0.35	-1.7
5,160,690	+		GFF5169	0.35	-0.5
5,160,698	-		GFF5169	0.35	+0.3
5,160,698	-		GFF5169	0.35	-1.9
5,160,698	-		GFF5169	0.35	-0.5
5,160,743	-		GFF5169	0.39	+1.5
5,160,743	-		GFF5169	0.39	+0.2
5,160,743	-		GFF5169	0.39	+0.3
5,160,758	+		GFF5169	0.40	-0.9
5,160,766	-		GFF5169	0.41	-0.8
5,160,773	+		GFF5169	0.42	-0.6
5,160,773	+		GFF5169	0.42	-2.0
5,160,781	-		GFF5169	0.42	-2.0
5,160,781	-		GFF5169	0.42	-0.9
5,160,788	+		GFF5169	0.43	-1.5
5,160,834	-		GFF5169	0.47	-1.9
5,160,852	+		GFF5169	0.49	-1.6
5,160,852	+		GFF5169	0.49	-1.5
5,160,895	-		GFF5169	0.52	+0.1
5,160,909	+		GFF5169	0.53	-0.7
5,160,917	-		GFF5169	0.54	-2.0
5,160,917	-		GFF5169	0.54	-1.5
5,160,933	+		GFF5169	0.55	-0.9
5,160,941	-		GFF5169	0.56	-1.0
5,160,993	-		GFF5169	0.61	-0.5
5,160,996	-		GFF5169	0.61	+0.0
5,161,030	-		GFF5169	0.64	-2.3
5,161,030	-		GFF5169	0.64	-2.3
5,161,031	-		GFF5169	0.64	-1.3
5,161,057	-		GFF5169	0.66	-0.7
5,161,135	+		GFF5169	0.73	+0.5
5,161,135	+		GFF5169	0.73	-1.0
5,161,135	-		GFF5169	0.73	-0.7
5,161,140	+		GFF5169	0.73	-1.5
5,161,143	-		GFF5169	0.74	-0.2
5,161,143	-		GFF5169	0.74	-2.1
5,161,145	+		GFF5169	0.74	-1.3
5,161,167	+		GFF5169	0.76	-0.4
5,161,175	+		GFF5169	0.76	-1.0
5,161,175	+		GFF5169	0.76	-0.7
5,161,175	+		GFF5169	0.76	+0.5
5,161,175	+		GFF5169	0.76	-1.3
5,161,175	-		GFF5169	0.76	-0.9
5,161,183	-		GFF5169	0.77	-0.7
5,161,192	+		GFF5169	0.78	+0.4
5,161,200	+		GFF5169	0.78	-1.9
5,161,210	+		GFF5169	0.79	-0.2
5,161,210	+		GFF5169	0.79	-1.2
5,161,217	-		GFF5169	0.80	-1.1
5,161,218	-		GFF5169	0.80	-1.2
5,161,225	+		GFF5169	0.81	-1.5
5,161,225	+		GFF5169	0.81	-0.9
5,161,233	-		GFF5169	0.81	+0.6
5,161,272	-		GFF5169	0.85	-1.3
5,161,295	-		GFF5169	0.87	-0.9
5,161,324	-		GFF5169	0.89	+0.2
5,161,357	+				-1.6
5,161,357	+				+0.1
5,161,365	-				-1.6
5,161,399	-				-1.0
5,161,439	+				-1.7
5,161,468	-				+0.7
5,161,478	+				+0.5
5,161,486	-				-3.1
5,161,514	+				-0.7
5,161,514	+				-2.0
5,161,522	-				-2.0
5,161,522	-				-1.0
5,161,522	-				-1.1
5,161,552	+				-1.8
5,161,552	+				+0.3
5,161,560	-				+0.6
5,161,560	-				+0.0
5,161,560	-				+0.5
5,161,572	+				-1.9
5,161,572	+				+0.2
5,161,577	+				+0.5
5,161,590	+		GFF5170	0.10	-1.4
5,161,590	+		GFF5170	0.10	-2.3
5,161,590	+		GFF5170	0.10	+0.1
5,161,590	+		GFF5170	0.10	-1.1
5,161,590	+		GFF5170	0.10	-0.5
5,161,590	+		GFF5170	0.10	-1.6
5,161,590	+		GFF5170	0.10	+1.5
5,161,590	+		GFF5170	0.10	-1.2
5,161,590	+		GFF5170	0.10	-0.5
5,161,590	+		GFF5170	0.10	-0.9
5,161,590	+		GFF5170	0.10	-1.1
5,161,595	+		GFF5170	0.11	-1.8
5,161,598	-		GFF5170	0.11	-2.0
5,161,598	-		GFF5170	0.11	-1.4
5,161,598	-		GFF5170	0.11	-1.7
5,161,598	-		GFF5170	0.11	-0.5
5,161,598	-		GFF5170	0.11	-0.7
5,161,600	+		GFF5170	0.11	+0.9
5,161,600	+		GFF5170	0.11	-1.4
5,161,608	-		GFF5170	0.12	-0.7
5,161,608	-		GFF5170	0.12	-0.4
5,161,608	-		GFF5170	0.12	+0.2
5,161,608	-		GFF5170	0.12	+0.3
5,161,608	-		GFF5170	0.12	-0.2
5,161,608	-		GFF5170	0.12	-0.9
5,161,614	+		GFF5170	0.13	-1.9
5,161,619	+		GFF5170	0.13	-0.6
5,161,619	+		GFF5170	0.13	-0.7
5,161,632	-		GFF5170	0.15	-1.1
5,161,642	-		GFF5170	0.16	-1.0
5,161,668	+		GFF5170	0.18	-0.7
5,161,668	+		GFF5170	0.18	-1.3
5,161,668	+		GFF5170	0.18	-0.9
5,161,668	+		GFF5170	0.18	-0.0
5,161,668	+		GFF5170	0.18	-0.8
5,161,668	+		GFF5170	0.18	+0.3
5,161,668	+		GFF5170	0.18	-2.6
5,161,675	+		GFF5170	0.19	-0.5
5,161,675	+		GFF5170	0.19	-1.3
5,161,675	+		GFF5170	0.19	-0.7
5,161,675	+		GFF5170	0.19	-0.2
5,161,675	+		GFF5170	0.19	-1.6
5,161,676	+		GFF5170	0.19	-1.1
5,161,676	-		GFF5170	0.19	-0.0
5,161,676	-		GFF5170	0.19	-2.0
5,161,676	-		GFF5170	0.19	+0.2
5,161,676	-		GFF5170	0.19	-0.9
5,161,676	-		GFF5170	0.19	-0.9
5,161,676	-		GFF5170	0.19	-0.9
5,161,676	-		GFF5170	0.19	-1.4
5,161,680	+		GFF5170	0.20	-1.4
5,161,683	-		GFF5170	0.20	+0.5
5,161,683	-		GFF5170	0.20	-1.0
5,161,683	-		GFF5170	0.20	-0.7
5,161,683	-		GFF5170	0.20	-0.3
5,161,683	-		GFF5170	0.20	-1.0
5,161,685	+		GFF5170	0.20	-0.5
5,161,695	+		GFF5170	0.21	+0.5
5,161,695	-		GFF5170	0.21	+1.2
5,161,701	-		GFF5170	0.22	-1.2
5,161,722	+		GFF5170	0.24	-1.5
5,161,722	+		GFF5170	0.24	-1.7
5,161,725	-		GFF5170	0.24	-0.0
5,161,725	-		GFF5170	0.24	-0.9
5,161,728	-		GFF5170	0.25	+0.7
5,161,730	-		GFF5170	0.25	-1.1
5,161,730	-		GFF5170	0.25	-1.2
5,161,730	-		GFF5170	0.25	-0.1
5,161,730	-		GFF5170	0.25	-0.9
5,161,742	+		GFF5170	0.26	-2.9
5,161,750	-		GFF5170	0.27	-0.8
5,161,852	+		GFF5170	0.38	-0.2
5,161,857	+		GFF5170	0.38	+1.3
5,161,862	+		GFF5170	0.39	+1.1
5,161,862	+		GFF5170	0.39	+0.8
5,161,862	+		GFF5170	0.39	-0.7
5,161,865	-		GFF5170	0.39	+0.2
5,161,891	+		GFF5170	0.42	+0.3
5,161,891	+		GFF5170	0.42	-1.5
5,161,896	+		GFF5170	0.42	+0.5
5,161,897	-		GFF5170	0.42	-0.4
5,161,901	+		GFF5170	0.43	+0.2
5,161,908	+		GFF5170	0.43	+0.3
5,161,908	+		GFF5170	0.43	-0.5
5,161,908	+		GFF5170	0.43	+0.8
5,161,914	-		GFF5170	0.44	-1.9
5,161,916	-		GFF5170	0.44	-1.7
5,161,923	-		GFF5170	0.45	-0.5
5,161,932	+		GFF5170	0.46	-2.1
5,161,943	+		GFF5170	0.47	-0.4
5,161,950	+		GFF5170	0.48	+0.5
5,161,951	-		GFF5170	0.48	-0.3
5,161,951	-		GFF5170	0.48	+0.6
5,161,951	-		GFF5170	0.48	-0.7
5,161,973	+		GFF5170	0.50	-0.9
5,161,991	-		GFF5170	0.52	-1.5
5,161,993	+		GFF5170	0.52	+0.3
5,161,993	+		GFF5170	0.52	+0.2
5,162,008	+		GFF5170	0.54	-1.5
5,162,008	+		GFF5170	0.54	-0.8
5,162,008	+		GFF5170	0.54	-0.2
5,162,008	+		GFF5170	0.54	-1.4
5,162,008	+		GFF5170	0.54	-0.1
5,162,008	+		GFF5170	0.54	+0.6
5,162,011	-		GFF5170	0.54	-0.0
5,162,016	-		GFF5170	0.55	-1.1
5,162,016	-		GFF5170	0.55	-0.8
5,162,021	-		GFF5170	0.55	-1.4
5,162,047	-		GFF5170	0.58	+0.7
5,162,047	-		GFF5170	0.58	-1.7
5,162,047	-		GFF5170	0.58	+0.7
5,162,049	+		GFF5170	0.58	-1.3
5,162,071	+		GFF5170	0.61	-1.1
5,162,078	+		GFF5170	0.61	-0.1
5,162,086	-		GFF5170	0.62	+0.5
5,162,086	-		GFF5170	0.62	+0.3
5,162,086	-		GFF5170	0.62	+0.3
5,162,086	-		GFF5170	0.62	-0.8
5,162,086	-		GFF5170	0.62	+0.2
5,162,110	-		GFF5170	0.65	-0.8
5,162,155	-		GFF5170	0.69	-1.5
5,162,170	-		GFF5170	0.71	-1.0
5,162,172	+		GFF5170	0.71	-0.4
5,162,172	+		GFF5170	0.71	-1.3
5,162,172	+		GFF5170	0.71	-1.1
5,162,172	+		GFF5170	0.71	+0.7
5,162,197	+		GFF5170	0.74	-0.1
5,162,205	-		GFF5170	0.75	+0.6
5,162,206	+		GFF5170	0.75	-0.1
5,162,206	+		GFF5170	0.75	-1.9
5,162,211	+		GFF5170	0.75	-1.5
5,162,211	+		GFF5170	0.75	-3.2
5,162,214	-		GFF5170	0.75	-0.9
5,162,227	-		GFF5170	0.77	-0.4
5,162,251	-		GFF5170	0.79	+0.9
5,162,310	-		GFF5170	0.85	-1.4
5,162,331	-		GFF5170	0.88	-2.0
5,162,350	-		GFF5170	0.90	-0.9
5,162,416	+				+0.1
5,162,417	-				-0.3
5,162,417	-				-0.9
5,162,460	+				-1.4
5,162,462	+				-1.0
5,162,462	+				-0.7
5,162,470	-				+0.9
5,162,472	+				-1.7
5,162,477	+				-0.9
5,162,488	+				-0.7
5,162,496	-		GFF5171	0.10	-0.8
5,162,498	+		GFF5171	0.11	+0.5
5,162,498	+		GFF5171	0.11	+0.4
5,162,498	+		GFF5171	0.11	-1.8
5,162,498	+		GFF5171	0.11	-1.9
5,162,498	+		GFF5171	0.11	-0.4
5,162,498	+		GFF5171	0.11	-0.2
5,162,504	+		GFF5171	0.12	-1.4
5,162,505	+		GFF5171	0.12	-1.0
5,162,506	-		GFF5171	0.12	-1.6
5,162,506	-		GFF5171	0.12	+1.5
5,162,506	-		GFF5171	0.12	-0.4
5,162,506	-		GFF5171	0.12	+0.2
5,162,506	-		GFF5171	0.12	+0.5
5,162,512	-		GFF5171	0.13	-0.7
5,162,512	-		GFF5171	0.13	+0.7
5,162,512	-		GFF5171	0.13	-0.9
5,162,512	-		GFF5171	0.13	-1.8
5,162,512	-		GFF5171	0.13	+0.1
5,162,555	+		GFF5171	0.22	-2.2
5,162,562	+		GFF5171	0.23	-0.7
5,162,563	+		GFF5171	0.23	-0.0
5,162,563	-		GFF5171	0.23	-0.8
5,162,570	-		GFF5171	0.25	-1.5
5,162,571	-		GFF5171	0.25	-1.2
5,162,571	-		GFF5171	0.25	-1.4
5,162,573	-		GFF5171	0.25	-0.9
5,162,585	+		GFF5171	0.28	-3.2
5,162,585	+		GFF5171	0.28	-0.6
5,162,585	+		GFF5171	0.28	+0.8
5,162,585	+		GFF5171	0.28	-1.8
5,162,585	+		GFF5171	0.28	-2.7
5,162,590	+		GFF5171	0.29	+0.1
5,162,590	+		GFF5171	0.29	-1.2
5,162,591	-		GFF5171	0.29	-2.0
5,162,593	-		GFF5171	0.29	+0.4
5,162,593	-		GFF5171	0.29	-0.4
5,162,593	-		GFF5171	0.29	-1.6
5,162,593	-		GFF5171	0.29	-0.2
5,162,598	-		GFF5171	0.30	-0.7
5,162,598	-		GFF5171	0.30	+0.5
5,162,598	-		GFF5171	0.30	-1.4
5,162,605	-		GFF5171	0.32	-1.9
5,162,605	-		GFF5171	0.32	+0.2
5,162,607	+		GFF5171	0.32	-0.3
5,162,654	+		GFF5171	0.41	-0.4
5,162,655	+		GFF5171	0.42	-1.5
5,162,663	-		GFF5171	0.43	-0.7
5,162,663	-		GFF5171	0.43	+0.9
5,162,681	-		GFF5171	0.47	+0.4
5,162,690	+		GFF5171	0.49	-0.4
5,162,691	+		GFF5171	0.49	+0.1
5,162,692	+		GFF5171	0.49	-1.9
5,162,697	+		GFF5171	0.50	-1.4
5,162,697	-		GFF5171	0.50	-0.1
5,162,699	-		GFF5171	0.50	-1.9
5,162,699	-		GFF5171	0.50	-0.7
5,162,699	-		GFF5171	0.50	-1.2
5,162,703	+		GFF5171	0.51	-2.0
5,162,706	-		GFF5171	0.52	-1.3
5,162,706	-		GFF5171	0.52	-0.1
5,162,709	+		GFF5171	0.52	+0.1
5,162,709	-		GFF5171	0.52	-1.7
5,162,713	+		GFF5171	0.53	+0.0
5,162,722	+		GFF5171	0.55	-1.2
5,162,727	-		GFF5171	0.56	-0.5
5,162,728	+		GFF5171	0.56	+0.3
5,162,749	+		GFF5171	0.60	-1.0
5,162,864	-		GFF5171	0.83	-1.5
5,162,875	-		GFF5171	0.85	-1.8
5,162,889	+		GFF5171	0.88	-0.2
5,162,889	+		GFF5171	0.88	-0.7
5,162,927	+				-0.7
5,162,942	+				-1.2
5,162,942	+				-1.0
5,162,942	+				-0.9
5,162,942	+				-1.3
5,162,950	-				-1.7
5,162,950	-				-1.9
5,162,950	-				-1.8
5,162,950	-				-0.4
5,162,959	+				-1.5
5,162,967	-				-1.0
5,162,985	+				-1.4
5,162,985	+				-1.5
5,162,990	+				-0.5
5,163,000	+				-0.2
5,163,000	+				-1.1
5,163,000	+				+0.7
5,163,000	+				-0.9
5,163,000	+				-0.9
5,163,000	+				+0.3
5,163,000	+				-0.0
5,163,000	+				-0.9
5,163,000	+				+1.2
5,163,000	+				-0.5
5,163,005	+				+0.1
5,163,005	+				-1.0
5,163,005	+				-0.7
5,163,007	+				-0.0
5,163,007	+				-0.7
5,163,007	+				+0.8
5,163,007	+				-0.9
5,163,008	-				-1.3
5,163,008	-				-0.2
5,163,008	-				-1.0
5,163,008	-				-2.5
5,163,008	-				-0.5
5,163,008	-				-0.5
5,163,008	-				+0.9
5,163,008	-				-0.3
5,163,010	+				-0.7
5,163,013	-				-0.9
5,163,013	-				-1.0
5,163,015	-				+0.4
5,163,015	-				-1.3
5,163,015	-				-1.7
5,163,015	-				-0.7
5,163,045	+				-0.5
5,163,053	-				-0.4
5,163,061	+				-1.9
5,163,061	+				-1.9
5,163,062	-				-2.0
5,163,111	+		GFF5172	0.14	-1.1
5,163,127	-		GFF5172	0.15	-1.2
5,163,151	-		GFF5172	0.17	-1.7
5,163,172	+		GFF5172	0.19	-1.6
5,163,182	+		GFF5172	0.20	-0.1
5,163,205	+		GFF5172	0.22	+0.4
5,163,205	+		GFF5172	0.22	-2.0
5,163,205	+		GFF5172	0.22	-0.2
5,163,205	+		GFF5172	0.22	-0.2
5,163,205	+		GFF5172	0.22	-1.9
5,163,205	+		GFF5172	0.22	+0.0
5,163,213	-		GFF5172	0.22	-0.4
5,163,213	-		GFF5172	0.22	-0.3
5,163,213	-		GFF5172	0.22	-0.2
5,163,215	+		GFF5172	0.22	-0.7
5,163,215	+		GFF5172	0.22	-0.5
5,163,215	+		GFF5172	0.22	-0.5
5,163,215	+		GFF5172	0.22	-0.9
5,163,223	-		GFF5172	0.23	-1.0
5,163,223	-		GFF5172	0.23	-1.3
5,163,223	-		GFF5172	0.23	+0.8
5,163,223	-		GFF5172	0.23	-0.3
5,163,223	-		GFF5172	0.23	-1.0
5,163,223	-		GFF5172	0.23	-1.7
5,163,235	+		GFF5172	0.24	+0.2
5,163,243	-		GFF5172	0.25	-0.7
5,163,244	+		GFF5172	0.25	-0.1
5,163,244	-		GFF5172	0.25	-1.8
5,163,245	+		GFF5172	0.25	-1.8
5,163,245	+		GFF5172	0.25	-1.3
5,163,268	+		GFF5172	0.27	+0.2
5,163,268	+		GFF5172	0.27	-0.1
5,163,268	+		GFF5172	0.27	+0.0
5,163,268	+		GFF5172	0.27	+0.6
5,163,268	+		GFF5172	0.27	-1.0
5,163,268	+		GFF5172	0.27	-2.7
5,163,268	+		GFF5172	0.27	-2.0
5,163,273	+		GFF5172	0.27	-0.1
5,163,276	-		GFF5172	0.28	+0.1
5,163,276	-		GFF5172	0.28	-2.1
5,163,276	-		GFF5172	0.28	-0.8
5,163,285	+		GFF5172	0.28	-1.5
5,163,285	+		GFF5172	0.28	-1.5
5,163,285	+		GFF5172	0.28	-1.8
5,163,285	+		GFF5172	0.28	-2.0
5,163,293	-		GFF5172	0.29	-1.3
5,163,312	+		GFF5172	0.31	-2.0
5,163,312	+		GFF5172	0.31	+0.2
5,163,337	+		GFF5172	0.33	-1.7
5,163,345	-		GFF5172	0.34	-0.6
5,163,354	+		GFF5172	0.34	-0.9
5,163,360	+		GFF5172	0.35	-3.7
5,163,366	+		GFF5172	0.35	-2.3
5,163,374	-		GFF5172	0.36	-1.2
5,163,374	-		GFF5172	0.36	-0.1
5,163,395	-		GFF5172	0.38	-0.8