Strain Fitness in Sphingobium sp. HT1-2 around GFF5101

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,088,635	-				-1.0
5,088,635	-				-0.4
5,088,660	+		GFF5100	0.11	-0.4
5,088,725	+		GFF5100	0.17	-1.0
5,088,729	-		GFF5100	0.17	-2.1
5,088,731	+		GFF5100	0.18	-0.4
5,088,731	+		GFF5100	0.18	-0.9
5,088,731	+		GFF5100	0.18	-2.0
5,088,731	+		GFF5100	0.18	+0.4
5,088,731	+		GFF5100	0.18	-1.0
5,088,733	-		GFF5100	0.18	-1.7
5,088,734	-		GFF5100	0.18	-1.1
5,088,734	-		GFF5100	0.18	-3.1
5,088,739	-		GFF5100	0.18	-0.2
5,088,739	-		GFF5100	0.18	-1.6
5,088,747	+		GFF5100	0.19	-0.4
5,088,747	+		GFF5100	0.19	-1.7
5,088,764	-		GFF5100	0.21	+0.7
5,088,777	-		GFF5100	0.22	+0.3
5,088,777	-		GFF5100	0.22	-0.4
5,088,778	-		GFF5100	0.22	+0.4
5,088,778	-		GFF5100	0.22	-0.8
5,088,779	+		GFF5100	0.22	-1.3
5,088,779	+		GFF5100	0.22	-1.7
5,088,790	+		GFF5100	0.24	-2.7
5,088,792	-		GFF5100	0.24	+0.1
5,088,798	-		GFF5100	0.24	-2.7
5,088,798	-		GFF5100	0.24	+1.1
5,088,823	-		GFF5100	0.27	+1.6
5,088,832	-		GFF5100	0.28	-2.1
5,088,835	-		GFF5100	0.28	-1.1
5,088,840	+		GFF5100	0.29	-1.9
5,088,863	+		GFF5100	0.31	-2.3
5,088,873	-		GFF5100	0.32	-0.4
5,088,894	-		GFF5100	0.34	+0.1
5,088,901	+		GFF5100	0.35	-1.9
5,088,901	+		GFF5100	0.35	-0.9
5,088,906	+		GFF5100	0.35	-1.4
5,088,906	+		GFF5100	0.35	-0.8
5,088,907	+		GFF5100	0.35	+0.1
5,088,907	+		GFF5100	0.35	-0.5
5,088,907	+		GFF5100	0.35	-1.5
5,088,907	+		GFF5100	0.35	-0.2
5,088,907	+		GFF5100	0.35	-0.8
5,088,909	-		GFF5100	0.36	-0.7
5,088,909	-		GFF5100	0.36	-1.1
5,088,915	-		GFF5100	0.36	+0.1
5,088,917	+		GFF5100	0.36	-1.2
5,088,951	+		GFF5100	0.40	-1.1
5,088,951	+		GFF5100	0.40	-0.0
5,088,959	-		GFF5100	0.41	-0.7
5,089,010	-		GFF5100	0.46	+0.1
5,089,026	+		GFF5100	0.47	-2.1
5,089,046	+		GFF5100	0.49	-0.2
5,089,054	-		GFF5100	0.50	+0.2
5,089,054	-		GFF5100	0.50	+0.2
5,089,054	-		GFF5100	0.50	-0.9
5,089,054	-		GFF5100	0.50	-0.1
5,089,059	-		GFF5100	0.51	+0.3
5,089,069	-		GFF5100	0.52	-1.3
5,089,070	-		GFF5100	0.52	-0.3
5,089,070	-		GFF5100	0.52	-0.5
5,089,094	-		GFF5100	0.54	-1.3
5,089,122	+		GFF5100	0.57	-1.5
5,089,122	+		GFF5100	0.57	-0.2
5,089,122	+		GFF5100	0.57	-2.5
5,089,124	+		GFF5100	0.57	-2.1
5,089,130	-		GFF5100	0.58	-2.4
5,089,130	-		GFF5100	0.58	-2.1
5,089,132	+		GFF5100	0.58	-1.9
5,089,132	+		GFF5100	0.58	-1.3
5,089,132	+		GFF5100	0.58	-0.7
5,089,132	+		GFF5100	0.58	-1.2
5,089,132	+		GFF5100	0.58	-1.1
5,089,140	-		GFF5100	0.59	-1.7
5,089,149	+		GFF5100	0.60	+0.0
5,089,149	+		GFF5100	0.60	-1.8
5,089,157	-		GFF5100	0.60	-0.2
5,089,157	-		GFF5100	0.60	-0.3
5,089,188	+		GFF5100	0.64	-0.5
5,089,188	+		GFF5100	0.64	-0.4
5,089,188	+		GFF5100	0.64	-0.2
5,089,188	+		GFF5100	0.64	-1.6
5,089,188	+		GFF5100	0.64	-1.0
5,089,188	+		GFF5100	0.64	-1.0
5,089,188	+		GFF5100	0.64	-1.2
5,089,188	+		GFF5100	0.64	-0.9
5,089,196	-		GFF5100	0.64	-0.9
5,089,196	-		GFF5100	0.64	+1.1
5,089,196	-		GFF5100	0.64	-2.1
5,089,224	-		GFF5100	0.67	-0.7
5,089,240	+		GFF5100	0.69	-0.3
5,089,250	+		GFF5100	0.70	-1.1
5,089,258	-		GFF5100	0.71	-1.5
5,089,278	-		GFF5100	0.73	-0.3
5,089,295	-		GFF5100	0.74	+0.5
5,089,301	+		GFF5100	0.75	-1.4
5,089,321	+		GFF5100	0.77	-0.6
5,089,329	-		GFF5100	0.78	-0.8
5,089,342	+		GFF5100	0.79	-0.3
5,089,349	+		GFF5100	0.80	-2.1
5,089,349	+		GFF5100	0.80	-1.9
5,089,349	+		GFF5100	0.80	-1.1
5,089,350	-		GFF5100	0.80	-1.6
5,089,350	-		GFF5100	0.80	-1.0
5,089,357	-		GFF5100	0.81	-1.1
5,089,357	-		GFF5100	0.81	+0.3
5,089,374	+		GFF5100	0.82	-1.4
5,089,374	+		GFF5100	0.82	-1.6
5,089,382	-		GFF5100	0.83	-1.9
5,089,408	+		GFF5100	0.86	-1.4
5,089,408	+		GFF5100	0.86	-1.1
5,089,421	-		GFF5100	0.87	-2.1
5,089,425	+		GFF5100	0.87	-1.0
5,089,444	+		GFF5100	0.89	-0.5
5,089,445	+		GFF5100	0.89	-0.6
5,089,467	+				-0.9
5,089,468	+				+0.6
5,089,470	-				+0.4
5,089,495	-				-0.3
5,089,501	+				-1.0
5,089,509	-				-1.4
5,089,509	-				+0.3
5,089,513	+				-1.7
5,089,513	+				-1.4
5,089,529	+				-2.2
5,089,537	-				+0.6
5,089,553	-				-1.6
5,089,560	-				+0.9
5,089,618	+				+0.6
5,089,625	+				-2.2
5,089,633	-				-1.7
5,089,645	-				-1.5
5,089,671	-				-1.1
5,089,671	-				+0.8
5,089,671	-				-0.1
5,089,681	-		GFF5101	0.11	-1.6
5,089,703	-		GFF5101	0.15	-1.5
5,089,703	-		GFF5101	0.15	-0.2
5,089,705	+		GFF5101	0.15	-2.6
5,089,705	+		GFF5101	0.15	-1.4
5,089,705	+		GFF5101	0.15	-1.2
5,089,705	+		GFF5101	0.15	-1.3
5,089,705	+		GFF5101	0.15	-3.0
5,089,705	+		GFF5101	0.15	-1.5
5,089,705	+		GFF5101	0.15	-1.6
5,089,705	+		GFF5101	0.15	-0.1
5,089,713	-		GFF5101	0.17	-1.1
5,089,713	-		GFF5101	0.17	-0.7
5,089,713	-		GFF5101	0.17	-2.6
5,089,713	-		GFF5101	0.17	+0.6
5,089,713	-		GFF5101	0.17	-0.8
5,089,713	-		GFF5101	0.17	-2.5
5,089,713	-		GFF5101	0.17	-0.3
5,089,713	-		GFF5101	0.17	-0.4
5,089,713	-		GFF5101	0.17	-1.7
5,089,713	-		GFF5101	0.17	-1.5
5,089,713	-		GFF5101	0.17	-0.9
5,089,713	-		GFF5101	0.17	-1.6
5,089,723	+		GFF5101	0.19	+0.2
5,089,737	-		GFF5101	0.22	-1.3
5,089,751	+		GFF5101	0.25	-1.2
5,089,759	-		GFF5101	0.26	-2.4
5,089,771	-		GFF5101	0.29	-1.2
5,089,781	+		GFF5101	0.31	-1.3
5,089,823	+		GFF5101	0.39	-0.5
5,089,831	-		GFF5101	0.41	-1.4
5,089,839	-		GFF5101	0.42	+0.3
5,089,888	+		GFF5101	0.52	-0.8
5,089,888	+		GFF5101	0.52	-1.3
5,089,893	+		GFF5101	0.53	-0.8
5,089,896	-		GFF5101	0.53	-0.2
5,089,896	-		GFF5101	0.53	-2.3
5,089,898	+		GFF5101	0.54	-0.3
5,089,898	+		GFF5101	0.54	+0.1
5,089,907	-		GFF5101	0.56	-1.4
5,089,907	-		GFF5101	0.56	-2.7
5,089,925	-		GFF5101	0.59	-0.1
5,089,929	+		GFF5101	0.60	-1.8
5,089,946	-		GFF5101	0.63	-0.4
5,089,960	+		GFF5101	0.66	-0.5
5,089,960	+		GFF5101	0.66	-0.8
5,089,960	+		GFF5101	0.66	-1.3
5,089,980	-		GFF5101	0.70	-0.9
5,089,980	-		GFF5101	0.70	-0.7
5,090,009	-		GFF5101	0.76	-1.3
5,090,014	+		GFF5101	0.77	-0.8
5,090,014	+		GFF5101	0.77	-0.7
5,090,016	+		GFF5101	0.77	-0.4
5,090,022	-		GFF5101	0.79	-0.9
5,090,077	-		GFF5101	0.90	-0.4
5,090,084	+				-1.2
5,090,087	-				-0.6
5,090,091	+				-0.8
5,090,091	+				+0.7
5,090,091	+				-2.3
5,090,091	+				-3.4
5,090,091	+				-0.9
5,090,091	+				-0.6
5,090,091	+				-1.4
5,090,091	+				-1.3
5,090,091	+				-1.1
5,090,091	+				-0.0
5,090,091	+				+0.4
5,090,091	+				-0.5
5,090,091	+				+0.4
5,090,099	-				-1.5
5,090,099	-				+1.1
5,090,099	-				-0.9
5,090,099	-				-0.2
5,090,099	-				+1.2
5,090,099	-				-1.5
5,090,099	-				+0.1
5,090,099	-				-0.0
5,090,099	-				-0.9
5,090,099	-				+0.0
5,090,099	-				-1.3
5,090,099	-				-0.8
5,090,099	-				-0.5
5,090,099	-				-1.5
5,090,109	-				-3.0
5,090,113	+				-0.8
5,090,113	+				-2.2
5,090,113	+				-0.8
5,090,113	+				-1.6
5,090,113	+				-1.7
5,090,113	+				-1.2
5,090,113	+				-0.2
5,090,113	+				-0.9
5,090,113	+				-0.7
5,090,113	+				+0.2
5,090,113	+				-2.2
5,090,121	-				+0.5
5,090,121	-				-0.5
5,090,121	-				-2.5
5,090,121	-				-0.8
5,090,121	-				-1.1
5,090,121	-				-2.1
5,090,135	+				-2.1
5,090,135	+				-1.1
5,090,135	+				+0.2
5,090,138	-				+0.1
5,090,143	-				-2.1
5,090,143	-				-1.7
5,090,143	-				-1.1
5,090,143	-				-0.7
5,090,143	-				-1.3
5,090,148	+				-0.8
5,090,148	-				-1.2
5,090,153	+				-1.6
5,090,163	+				-0.4
5,090,168	+				-2.0
5,090,168	+				-2.1
5,090,171	-				-0.9
5,090,176	-				+1.1
5,090,194	-		GFF5102	0.12	+1.5
5,090,200	-		GFF5102	0.13	-0.9
5,090,200	-		GFF5102	0.13	-0.7
5,090,208	-		GFF5102	0.14	-0.9
5,090,223	-		GFF5102	0.16	-1.4
5,090,224	+		GFF5102	0.17	-0.9
5,090,227	+		GFF5102	0.17	-1.7
5,090,232	-		GFF5102	0.18	-0.1
5,090,234	-		GFF5102	0.18	-0.8
5,090,238	+		GFF5102	0.19	-0.6
5,090,258	+		GFF5102	0.22	-1.4
5,090,263	+		GFF5102	0.23	-0.0
5,090,263	+		GFF5102	0.23	-1.9
5,090,271	-		GFF5102	0.25	-1.0
5,090,272	-		GFF5102	0.25	-0.1
5,090,272	-		GFF5102	0.25	-0.8
5,090,299	+		GFF5102	0.29	-1.9
5,090,303	-		GFF5102	0.30	-1.4
5,090,310	+		GFF5102	0.31	-1.4
5,090,318	-		GFF5102	0.32	-1.7
5,090,318	-		GFF5102	0.32	+0.7
5,090,318	-		GFF5102	0.32	-0.5
5,090,320	+		GFF5102	0.33	-2.9
5,090,355	+		GFF5102	0.39	-1.9
5,090,355	+		GFF5102	0.39	+1.1
5,090,358	-		GFF5102	0.39	-2.3
5,090,360	+		GFF5102	0.40	-0.9
5,090,362	-		GFF5102	0.40	-0.9
5,090,363	-		GFF5102	0.40	-1.7
5,090,368	-		GFF5102	0.41	+0.1
5,090,368	-		GFF5102	0.41	-2.3
5,090,370	+		GFF5102	0.41	-0.8
5,090,370	+		GFF5102	0.41	-2.2
5,090,370	+		GFF5102	0.41	+0.1
5,090,373	-		GFF5102	0.42	-0.1
5,090,378	-		GFF5102	0.43	-0.9
5,090,378	-		GFF5102	0.43	-1.8
5,090,378	-		GFF5102	0.43	-1.9
5,090,380	+		GFF5102	0.43	-1.1
5,090,384	-		GFF5102	0.44	-2.0
5,090,388	+		GFF5102	0.44	-2.6
5,090,388	+		GFF5102	0.44	-0.7
5,090,388	+		GFF5102	0.44	-1.9
5,090,388	+		GFF5102	0.44	-1.5
5,090,388	+		GFF5102	0.44	-0.9
5,090,388	+		GFF5102	0.44	-1.4
5,090,388	+		GFF5102	0.44	+0.6
5,090,396	-		GFF5102	0.46	-1.4
5,090,396	-		GFF5102	0.46	-1.6
5,090,396	-		GFF5102	0.46	+1.3
5,090,396	-		GFF5102	0.46	-1.5
5,090,396	-		GFF5102	0.46	-1.1
5,090,396	-		GFF5102	0.46	-0.8
5,090,407	+		GFF5102	0.47	-2.1
5,090,407	+		GFF5102	0.47	+0.4
5,090,407	+		GFF5102	0.47	-0.6
5,090,407	+		GFF5102	0.47	+0.2
5,090,415	-		GFF5102	0.49	-1.3
5,090,415	-		GFF5102	0.49	-2.1
5,090,415	-		GFF5102	0.49	-2.0
5,090,415	-		GFF5102	0.49	-0.8
5,090,428	+		GFF5102	0.51	-0.4
5,090,434	-		GFF5102	0.52	-0.6
5,090,434	-		GFF5102	0.52	-0.3
5,090,445	+		GFF5102	0.54	+0.1
5,090,475	+		GFF5102	0.59	-1.2
5,090,476	-		GFF5102	0.59	-1.2
5,090,477	+		GFF5102	0.59	-0.9
5,090,480	+		GFF5102	0.60	-1.5
5,090,480	+		GFF5102	0.60	-0.1
5,090,480	+		GFF5102	0.60	-0.7
5,090,506	-		GFF5102	0.64	-1.1
5,090,511	-		GFF5102	0.65	-1.6
5,090,515	-		GFF5102	0.66	-1.7
5,090,516	+		GFF5102	0.66	-1.8
5,090,518	+		GFF5102	0.66	-0.8
5,090,518	+		GFF5102	0.66	-1.9
5,090,518	+		GFF5102	0.66	-3.0
5,090,518	+		GFF5102	0.66	-0.8
5,090,518	+		GFF5102	0.66	-1.2
5,090,523	+		GFF5102	0.67	-0.9
5,090,523	+		GFF5102	0.67	+0.4
5,090,524	-		GFF5102	0.67	+1.4
5,090,524	-		GFF5102	0.67	-1.3
5,090,524	-		GFF5102	0.67	-2.2
5,090,524	-		GFF5102	0.67	-0.6
5,090,524	-		GFF5102	0.67	-0.5
5,090,524	-		GFF5102	0.67	-1.2
5,090,526	-		GFF5102	0.68	-2.2
5,090,526	-		GFF5102	0.68	-1.5
5,090,526	-		GFF5102	0.68	-0.8
5,090,526	-		GFF5102	0.68	-1.4
5,090,526	-		GFF5102	0.68	-2.2
5,090,526	-		GFF5102	0.68	+0.4
5,090,528	+		GFF5102	0.68	-1.2
5,090,534	-		GFF5102	0.69	-0.0
5,090,536	+		GFF5102	0.69	+0.2
5,090,536	+		GFF5102	0.69	-1.6
5,090,536	+		GFF5102	0.69	-1.1
5,090,536	+		GFF5102	0.69	-2.5
5,090,536	+		GFF5102	0.69	-0.4
5,090,536	+		GFF5102	0.69	+0.6
5,090,536	+		GFF5102	0.69	-1.0
5,090,536	+		GFF5102	0.69	+0.5
5,090,536	+		GFF5102	0.69	-0.9
5,090,544	-		GFF5102	0.71	-1.6
5,090,544	-		GFF5102	0.71	-2.6
5,090,544	-		GFF5102	0.71	+0.2
5,090,544	-		GFF5102	0.71	-0.7
5,090,544	-		GFF5102	0.71	-1.6
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