Strain Fitness in Sphingobium sp. HT1-2 around GFF5086

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,077,513	+				-0.2
5,077,526	-				-1.7
5,077,529	+				-0.6
5,077,578	+				+0.3
5,077,607	+				-0.4
5,077,610	-				+1.2
5,077,612	+				-1.5
5,077,620	-				-0.7
5,077,620	-				-0.2
5,077,625	-				-2.7
5,077,629	-				-2.0
5,077,638	+		GFF5085	0.11	+0.2
5,077,661	+		GFF5085	0.13	+0.1
5,077,665	+		GFF5085	0.13	-1.8
5,077,665	+		GFF5085	0.13	-0.8
5,077,692	-		GFF5085	0.16	-0.6
5,077,700	-		GFF5085	0.17	-0.6
5,077,717	-		GFF5085	0.19	-1.4
5,077,731	-		GFF5085	0.20	+0.2
5,077,731	-		GFF5085	0.20	-0.6
5,077,732	+		GFF5085	0.21	-1.9
5,077,740	-		GFF5085	0.21	-0.8
5,077,745	-		GFF5085	0.22	-1.4
5,077,752	-		GFF5085	0.23	-1.3
5,077,782	-		GFF5085	0.26	-1.6
5,077,785	+		GFF5085	0.26	-1.5
5,077,789	+		GFF5085	0.27	-2.0
5,077,791	+		GFF5085	0.27	+0.4
5,077,791	+		GFF5085	0.27	-1.9
5,077,791	+		GFF5085	0.27	-1.2
5,077,791	+		GFF5085	0.27	-0.8
5,077,791	+		GFF5085	0.27	-1.7
5,077,791	+		GFF5085	0.27	-1.3
5,077,799	+		GFF5085	0.28	-1.8
5,077,799	-		GFF5085	0.28	-1.6
5,077,799	-		GFF5085	0.28	-0.7
5,077,799	-		GFF5085	0.28	-1.4
5,077,799	-		GFF5085	0.28	-2.3
5,077,799	-		GFF5085	0.28	-1.4
5,077,801	+		GFF5085	0.28	-1.3
5,077,815	-		GFF5085	0.29	-0.5
5,077,815	-		GFF5085	0.29	+0.0
5,077,817	-		GFF5085	0.30	-0.8
5,077,817	-		GFF5085	0.30	-0.3
5,077,830	+		GFF5085	0.31	-1.1
5,077,833	+		GFF5085	0.31	-1.0
5,077,840	+		GFF5085	0.32	-2.0
5,077,840	+		GFF5085	0.32	-0.4
5,077,840	+		GFF5085	0.32	-0.3
5,077,840	+		GFF5085	0.32	-1.8
5,077,840	+		GFF5085	0.32	-2.3
5,077,848	-		GFF5085	0.33	-1.3
5,077,848	-		GFF5085	0.33	-1.3
5,077,848	-		GFF5085	0.33	-1.3
5,077,848	-		GFF5085	0.33	-2.8
5,077,848	-		GFF5085	0.33	+0.6
5,077,848	-		GFF5085	0.33	-2.4
5,077,848	-		GFF5085	0.33	-1.5
5,077,851	+		GFF5085	0.33	-1.3
5,077,851	+		GFF5085	0.33	-1.0
5,077,874	+		GFF5085	0.36	-1.0
5,077,903	+		GFF5085	0.39	-0.1
5,077,904	+		GFF5085	0.39	-2.1
5,077,904	+		GFF5085	0.39	+0.5
5,077,904	+		GFF5085	0.39	-1.3
5,077,912	-		GFF5085	0.40	-1.2
5,077,929	-		GFF5085	0.42	-0.8
5,077,929	-		GFF5085	0.42	-1.8
5,077,929	-		GFF5085	0.42	-1.4
5,077,951	+		GFF5085	0.44	-1.4
5,077,959	-		GFF5085	0.45	-0.8
5,077,961	+		GFF5085	0.45	-0.4
5,077,961	+		GFF5085	0.45	-0.8
5,077,982	+		GFF5085	0.47	+0.9
5,077,987	+		GFF5085	0.48	+0.0
5,077,996	-		GFF5085	0.49	-2.3
5,078,015	+		GFF5085	0.51	-0.4
5,078,023	-		GFF5085	0.51	-1.7
5,078,032	-		GFF5085	0.52	-0.8
5,078,038	+		GFF5085	0.53	-1.8
5,078,039	+		GFF5085	0.53	-2.4
5,078,058	-		GFF5085	0.55	-1.3
5,078,060	+		GFF5085	0.55	-0.4
5,078,060	+		GFF5085	0.55	-0.9
5,078,060	+		GFF5085	0.55	-0.9
5,078,060	+		GFF5085	0.55	+0.3
5,078,068	-		GFF5085	0.56	-1.4
5,078,068	-		GFF5085	0.56	-1.6
5,078,119	+		GFF5085	0.62	-1.1
5,078,135	+		GFF5085	0.63	-2.0
5,078,143	-		GFF5085	0.64	-2.0
5,078,182	-		GFF5085	0.68	-0.2
5,078,193	-		GFF5085	0.70	-1.6
5,078,234	+		GFF5085	0.74	-1.4
5,078,249	-		GFF5085	0.75	-1.0
5,078,255	-		GFF5085	0.76	-1.8
5,078,255	-		GFF5085	0.76	-0.6
5,078,255	-		GFF5085	0.76	-1.6
5,078,255	-		GFF5085	0.76	-1.0
5,078,257	+		GFF5085	0.76	-0.1
5,078,287	-		GFF5085	0.80	-0.7
5,078,302	+		GFF5085	0.81	-0.3
5,078,320	+		GFF5085	0.83	+0.0
5,078,328	-		GFF5085	0.84	-0.0
5,078,328	-		GFF5085	0.84	-0.1
5,078,352	-		GFF5085	0.86	-1.6
5,078,361	+		GFF5085	0.87	-0.4
5,078,361	+		GFF5085	0.87	-0.7
5,078,361	+		GFF5085	0.87	-1.7
5,078,361	+		GFF5085	0.87	-0.5
5,078,369	-		GFF5085	0.88	-0.9
5,078,369	-		GFF5085	0.88	-0.5
5,078,369	-		GFF5085	0.88	+0.6
5,078,369	-		GFF5085	0.88	-1.0
5,078,369	-		GFF5085	0.88	-1.1
5,078,375	-		GFF5085	0.89	+0.3
5,078,383	+		GFF5085	0.90	+0.7
5,078,404	-				-1.8
5,078,409	+				-0.8
5,078,419	-				-2.9
5,078,425	-				-0.8
5,078,430	+				+0.9
5,078,430	+				-1.1
5,078,438	-				-0.7
5,078,438	-				-1.3
5,078,438	-				-1.7
5,078,438	-				-0.2
5,078,441	-				-1.0
5,078,458	-				-1.4
5,078,474	+				-1.5
5,078,474	+				-2.3
5,078,474	+				-1.3
5,078,474	+				-2.0
5,078,474	+				-0.3
5,078,482	-				-2.4
5,078,482	-				+0.5
5,078,482	-				+0.2
5,078,482	-				-1.6
5,078,482	-				+0.6
5,078,482	-				-0.1
5,078,482	-				-1.5
5,078,482	-				-1.5
5,078,482	-				-0.9
5,078,482	-				-0.7
5,078,509	-				+0.4
5,078,509	-				-1.0
5,078,531	+		GFF5086	0.13	-1.7
5,078,531	+		GFF5086	0.13	+0.5
5,078,534	-		GFF5086	0.14	-2.5
5,078,536	+		GFF5086	0.15	-2.4
5,078,536	+		GFF5086	0.15	-0.5
5,078,536	+		GFF5086	0.15	-1.5
5,078,539	-		GFF5086	0.16	+0.0
5,078,539	-		GFF5086	0.16	-1.6
5,078,544	-		GFF5086	0.18	-1.7
5,078,546	-		GFF5086	0.18	-0.8
5,078,561	+		GFF5086	0.23	-0.6
5,078,566	+		GFF5086	0.25	-2.2
5,078,567	+		GFF5086	0.25	-1.8
5,078,575	-		GFF5086	0.28	-0.7
5,078,575	-		GFF5086	0.28	-0.4
5,078,575	-		GFF5086	0.28	-1.4
5,078,577	+		GFF5086	0.28	-2.2
5,078,588	+		GFF5086	0.32	-0.3
5,078,588	+		GFF5086	0.32	-1.7
5,078,588	+		GFF5086	0.32	-0.8
5,078,596	-		GFF5086	0.34	-1.3
5,078,596	-		GFF5086	0.34	+0.0
5,078,596	-		GFF5086	0.34	-2.6
5,078,597	+		GFF5086	0.35	-2.2
5,078,605	-		GFF5086	0.37	-1.3
5,078,610	-		GFF5086	0.39	-1.6
5,078,638	+		GFF5086	0.48	-1.5
5,078,640	-		GFF5086	0.48	-1.5
5,078,646	-		GFF5086	0.50	-1.3
5,078,664	-		GFF5086	0.56	-3.1
5,078,680	+		GFF5086	0.61	-1.5
5,078,680	+		GFF5086	0.61	-2.4
5,078,688	-		GFF5086	0.64	-2.0
5,078,688	-		GFF5086	0.64	-0.3
5,078,688	-		GFF5086	0.64	-1.5
5,078,715	+		GFF5086	0.72	-0.2
5,078,715	+		GFF5086	0.72	-1.8
5,078,723	-		GFF5086	0.75	-1.1
5,078,770	+				-1.8
5,078,781	-				-1.1
5,078,796	+				+1.1
5,078,796	+				-1.0
5,078,796	+				-2.3
5,078,796	+				-0.7
5,078,796	+				-1.3
5,078,796	+				-0.4
5,078,796	+				-1.3
5,078,801	+				-1.2
5,078,804	+				-0.7
5,078,804	-				-1.3
5,078,804	-				+0.3
5,078,804	-				-0.6
5,078,804	-				+0.3
5,078,804	-				-0.8
5,078,804	-				-2.1
5,078,804	-				-0.5
5,078,804	-				-0.7
5,078,804	-				-1.2
5,078,814	-				+0.3
5,078,814	-				+0.2
5,078,821	+				-2.0
5,078,821	+				-1.1
5,078,821	+				-2.0
5,078,821	+				-1.0
5,078,821	+				-1.3
5,078,821	+				-1.0
5,078,821	+				-1.6
5,078,821	+				-1.1
5,078,821	+				+0.2
5,078,821	+				-1.1
5,078,821	+				-2.0
5,078,821	+				-0.8
5,078,821	+				-0.8
5,078,821	+				-0.1
5,078,821	+				-0.8
5,078,821	+				-2.0
5,078,829	-				-1.3
5,078,829	-				-1.1
5,078,829	-				-1.1
5,078,829	-				+0.7
5,078,829	-				-1.1
5,078,829	-				-0.4
5,078,829	-				-1.2
5,078,829	-				-0.1
5,078,829	-				-1.3
5,078,829	-				-1.7
5,078,829	-				-1.8
5,078,829	-				-0.8
5,078,890	+				-2.0
5,078,909	-		GFF5087	0.11	+0.2
5,078,911	+		GFF5087	0.12	-0.6
5,078,924	-		GFF5087	0.13	-0.1
5,078,926	+		GFF5087	0.13	+0.0
5,078,926	+		GFF5087	0.13	-2.1
5,078,926	+		GFF5087	0.13	+0.4
5,078,960	-		GFF5087	0.16	-0.4
5,078,969	-		GFF5087	0.17	-2.2
5,078,974	-		GFF5087	0.18	-0.8
5,078,985	+		GFF5087	0.19	+1.5
5,078,985	+		GFF5087	0.19	-0.9
5,078,985	+		GFF5087	0.19	-0.9
5,078,991	-		GFF5087	0.19	+0.0
5,078,993	-		GFF5087	0.19	-1.0
5,079,001	+		GFF5087	0.20	+0.7
5,079,006	+		GFF5087	0.21	-1.0
5,079,006	+		GFF5087	0.21	-0.9
5,079,014	-		GFF5087	0.22	-0.8
5,079,023	-		GFF5087	0.22	+0.1
5,079,044	+		GFF5087	0.24	+0.3
5,079,061	-		GFF5087	0.26	-1.0
5,079,067	-		GFF5087	0.27	-0.7
5,079,070	+		GFF5087	0.27	-0.4
5,079,080	-		GFF5087	0.28	-2.2
5,079,085	+		GFF5087	0.28	+0.1
5,079,098	-		GFF5087	0.30	-0.9
5,079,100	+		GFF5087	0.30	-0.1
5,079,134	+		GFF5087	0.33	-2.5
5,079,134	+		GFF5087	0.33	-1.7
5,079,140	+		GFF5087	0.34	-0.9
5,079,153	-		GFF5087	0.35	-2.6
5,079,161	-		GFF5087	0.36	-0.7
5,079,167	-		GFF5087	0.36	-1.5
5,079,181	+		GFF5087	0.38	-0.6
5,079,189	-		GFF5087	0.39	+0.0
5,079,196	+		GFF5087	0.39	-0.5
5,079,196	+		GFF5087	0.39	-2.4
5,079,196	+		GFF5087	0.39	-0.7
5,079,196	+		GFF5087	0.39	-2.1
5,079,196	+		GFF5087	0.39	+0.2
5,079,196	+		GFF5087	0.39	-0.0
5,079,201	+		GFF5087	0.40	-1.7
5,079,204	-		GFF5087	0.40	-2.1
5,079,204	-		GFF5087	0.40	-0.5
5,079,204	-		GFF5087	0.40	-1.9
5,079,204	-		GFF5087	0.40	-0.3
5,079,204	-		GFF5087	0.40	-2.3
5,079,204	-		GFF5087	0.40	-1.6
5,079,206	+		GFF5087	0.40	-0.7
5,079,206	+		GFF5087	0.40	+0.3
5,079,206	+		GFF5087	0.40	-0.7
5,079,206	+		GFF5087	0.40	-0.7
5,079,214	-		GFF5087	0.41	+0.1
5,079,214	-		GFF5087	0.41	-0.6
5,079,229	-		GFF5087	0.42	-1.0
5,079,230	+		GFF5087	0.43	-1.1
5,079,235	+		GFF5087	0.43	-1.5
5,079,238	-		GFF5087	0.43	-0.7
5,079,240	+		GFF5087	0.44	+0.1
5,079,244	+		GFF5087	0.44	-1.3
5,079,249	+		GFF5087	0.44	-1.2
5,079,257	-		GFF5087	0.45	-1.7
5,079,285	+		GFF5087	0.48	-1.3
5,079,293	-		GFF5087	0.49	-0.2
5,079,293	-		GFF5087	0.49	-2.2
5,079,303	-		GFF5087	0.50	-1.4
5,079,303	-		GFF5087	0.50	+0.0
5,079,320	+		GFF5087	0.51	-0.6
5,079,320	+		GFF5087	0.51	-1.2
5,079,323	-		GFF5087	0.52	-0.6
5,079,326	+		GFF5087	0.52	-0.4
5,079,326	+		GFF5087	0.52	-0.7
5,079,339	-		GFF5087	0.53	-0.8
5,079,348	+		GFF5087	0.54	-2.3
5,079,359	-		GFF5087	0.55	-1.6
5,079,364	-		GFF5087	0.56	-0.4
5,079,364	-		GFF5087	0.56	-0.3
5,079,367	+		GFF5087	0.56	-0.0
5,079,368	+		GFF5087	0.56	-0.5
5,079,368	+		GFF5087	0.56	+0.1
5,079,368	+		GFF5087	0.56	-0.8
5,079,373	+		GFF5087	0.57	-1.7
5,079,373	+		GFF5087	0.57	-0.8
5,079,373	+		GFF5087	0.57	+0.3
5,079,373	+		GFF5087	0.57	-0.7
5,079,373	+		GFF5087	0.57	-1.4
5,079,373	+		GFF5087	0.57	-0.9
5,079,373	+		GFF5087	0.57	-0.5
5,079,376	-		GFF5087	0.57	-1.0
5,079,376	-		GFF5087	0.57	-1.0
5,079,376	-		GFF5087	0.57	-0.6
5,079,379	+		GFF5087	0.57	+0.1
5,079,379	+		GFF5087	0.57	+0.3
5,079,379	+		GFF5087	0.57	-1.7
5,079,379	+		GFF5087	0.57	-1.4
5,079,379	+		GFF5087	0.57	+0.6
5,079,379	+		GFF5087	0.57	-0.2
5,079,379	+		GFF5087	0.57	-0.4
5,079,379	+		GFF5087	0.57	-2.4
5,079,379	+		GFF5087	0.57	-2.2
5,079,381	-		GFF5087	0.57	-0.9
5,079,381	-		GFF5087	0.57	+0.5
5,079,381	-		GFF5087	0.57	-1.4
5,079,381	-		GFF5087	0.57	-0.9
5,079,381	-		GFF5087	0.57	+0.5
5,079,381	-		GFF5087	0.57	-0.3
5,079,386	+		GFF5087	0.58	-0.9
5,079,387	-		GFF5087	0.58	-1.2
5,079,387	-		GFF5087	0.58	-0.5
5,079,387	-		GFF5087	0.58	-2.6
5,079,387	-		GFF5087	0.58	-0.9
5,079,387	-		GFF5087	0.58	-2.4
5,079,387	-		GFF5087	0.58	-2.1
5,079,432	-		GFF5087	0.62	-2.4
5,079,438	-		GFF5087	0.63	-0.8
5,079,450	+		GFF5087	0.64	-1.9
5,079,451	-		GFF5087	0.64	-0.9
5,079,455	+		GFF5087	0.65	-1.4
5,079,455	+		GFF5087	0.65	-1.1
5,079,458	-		GFF5087	0.65	-1.5
5,079,460	+		GFF5087	0.65	-0.8
5,079,460	+		GFF5087	0.65	-3.4
5,079,463	-		GFF5087	0.65	-0.9
5,079,463	-		GFF5087	0.65	-1.4
5,079,468	+		GFF5087	0.66	-2.2
5,079,468	-		GFF5087	0.66	-2.4
5,079,487	+		GFF5087	0.68	-1.0
5,079,523	-		GFF5087	0.71	-1.4
5,079,556	-		GFF5087	0.74	+0.7
5,079,568	+		GFF5087	0.76	-0.9
5,079,568	+		GFF5087	0.76	-2.2
5,079,568	+		GFF5087	0.76	-0.7
5,079,568	+		GFF5087	0.76	-2.3
5,079,568	+		GFF5087	0.76	-0.4
5,079,568	+		GFF5087	0.76	+1.3
5,079,568	+		GFF5087	0.76	-0.9
5,079,576	-		GFF5087	0.76	+0.9
5,079,576	-		GFF5087	0.76	-1.4
5,079,576	-		GFF5087	0.76	-2.1
5,079,576	-		GFF5087	0.76	-0.7
5,079,576	-		GFF5087	0.76	-2.2
5,079,576	-		GFF5087	0.76	-1.4
5,079,576	-		GFF5087	0.76	-2.2
5,079,576	-		GFF5087	0.76	-1.4
5,079,598	+		GFF5087	0.78	+1.1
5,079,606	-		GFF5087	0.79	-0.7
5,079,611	-		GFF5087	0.80	-1.4
5,079,625	-		GFF5087	0.81	-1.0
5,079,636	-		GFF5087	0.82	-1.2
5,079,638	+		GFF5087	0.82	-0.3
5,079,674	+		GFF5087	0.86	-0.6
5,079,674	+		GFF5087	0.86	-1.3
5,079,675	-		GFF5087	0.86	-1.3
5,079,682	-		GFF5087	0.87	-0.6
5,079,682	-		GFF5087	0.87	-0.7
5,079,682	-		GFF5087	0.87	-1.3
5,079,682	-		GFF5087	0.87	-1.6
5,079,687	-		GFF5087	0.87	-0.5
5,079,734	+				-2.0
5,079,739	-				-1.5
5,079,742	+				+1.8
5,079,750	-				-1.3
5,079,753	+				-0.7
5,079,757	+				+0.7
5,079,760	-				-0.9
5,079,765	-				-0.8
5,079,765	-				-0.5
5,079,765	-				-1.6
5,079,765	-				-1.0
5,079,765	-				+0.8
5,079,767	-				-1.7
5,079,777	-				-1.8
5,079,795	-				-0.9
5,079,797	+				-1.3