Strain Fitness in Sphingobium sp. HT1-2 around GFF5085

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,076,543	+				-1.1
5,076,544	+				-2.4
5,076,551	-				-0.8
5,076,558	+				-1.8
5,076,559	+				-0.7
5,076,587	-				-1.6
5,076,598	+				-0.6
5,076,600	-				-1.1
5,076,670	+				-0.2
5,076,670	+				-0.8
5,076,672	+				+0.5
5,076,672	+				+0.3
5,076,672	+				+0.9
5,076,672	+				-0.8
5,076,672	+				-0.1
5,076,672	+				-0.2
5,076,672	-				+0.2
5,076,678	-				-0.9
5,076,678	-				-1.3
5,076,684	+				-0.3
5,076,689	+				-1.8
5,076,706	-		GFF5084	0.11	-0.5
5,076,706	-		GFF5084	0.11	-1.4
5,076,725	-		GFF5084	0.14	-1.1
5,076,740	-		GFF5084	0.15	-0.7
5,076,742	-		GFF5084	0.16	-0.9
5,076,751	-		GFF5084	0.17	-0.0
5,076,759	+		GFF5084	0.18	-0.9
5,076,764	+		GFF5084	0.18	-2.4
5,076,764	+		GFF5084	0.18	-1.6
5,076,764	+		GFF5084	0.18	-0.7
5,076,772	-		GFF5084	0.19	-0.1
5,076,772	-		GFF5084	0.19	+0.0
5,076,772	-		GFF5084	0.19	+0.6
5,076,772	-		GFF5084	0.19	-1.5
5,076,772	-		GFF5084	0.19	-0.2
5,076,772	-		GFF5084	0.19	-1.3
5,076,774	+		GFF5084	0.20	-0.6
5,076,774	+		GFF5084	0.20	-1.1
5,076,774	+		GFF5084	0.20	-1.2
5,076,779	+		GFF5084	0.20	-1.2
5,076,779	+		GFF5084	0.20	-1.8
5,076,782	-		GFF5084	0.21	+0.7
5,076,782	-		GFF5084	0.21	-1.8
5,076,782	-		GFF5084	0.21	-2.0
5,076,782	-		GFF5084	0.21	-0.2
5,076,787	-		GFF5084	0.21	-2.2
5,076,787	-		GFF5084	0.21	-0.3
5,076,787	-		GFF5084	0.21	+0.5
5,076,793	-		GFF5084	0.22	-1.4
5,076,843	+		GFF5084	0.28	-2.3
5,076,856	-		GFF5084	0.30	-0.6
5,076,874	+		GFF5084	0.32	-1.8
5,076,874	+		GFF5084	0.32	-0.1
5,076,874	+		GFF5084	0.32	-1.6
5,076,874	+		GFF5084	0.32	-0.8
5,076,874	+		GFF5084	0.32	-1.8
5,076,874	+		GFF5084	0.32	-0.4
5,076,874	+		GFF5084	0.32	-0.6
5,076,882	-		GFF5084	0.33	-2.3
5,076,882	-		GFF5084	0.33	-1.1
5,076,882	-		GFF5084	0.33	-1.0
5,076,882	-		GFF5084	0.33	-1.3
5,076,882	-		GFF5084	0.33	-1.6
5,076,882	-		GFF5084	0.33	-0.1
5,076,887	-		GFF5084	0.34	-0.7
5,076,888	+		GFF5084	0.34	+0.3
5,076,915	-		GFF5084	0.37	-1.2
5,076,915	-		GFF5084	0.37	-0.9
5,076,916	+		GFF5084	0.37	+1.2
5,076,937	+		GFF5084	0.40	-0.8
5,076,937	+		GFF5084	0.40	-0.3
5,076,938	+		GFF5084	0.40	-1.1
5,076,940	-		GFF5084	0.40	-0.6
5,076,940	-		GFF5084	0.40	-0.7
5,076,942	+		GFF5084	0.41	+0.5
5,076,945	-		GFF5084	0.41	-0.9
5,076,945	-		GFF5084	0.41	+0.5
5,076,959	-		GFF5084	0.43	+0.3
5,076,961	+		GFF5084	0.43	+0.0
5,076,961	+		GFF5084	0.43	-1.7
5,076,994	-		GFF5084	0.47	-1.8
5,077,010	+		GFF5084	0.49	+0.8
5,077,012	+		GFF5084	0.49	-3.6
5,077,012	+		GFF5084	0.49	-1.1
5,077,018	-		GFF5084	0.50	-1.9
5,077,038	+		GFF5084	0.52	-2.1
5,077,038	+		GFF5084	0.52	+0.2
5,077,038	+		GFF5084	0.52	-0.2
5,077,046	-		GFF5084	0.53	-1.8
5,077,046	-		GFF5084	0.53	-1.6
5,077,046	-		GFF5084	0.53	-0.2
5,077,046	-		GFF5084	0.53	-2.1
5,077,057	+		GFF5084	0.55	-1.8
5,077,057	+		GFF5084	0.55	-0.5
5,077,058	+		GFF5084	0.55	-2.6
5,077,058	+		GFF5084	0.55	-0.2
5,077,061	-		GFF5084	0.55	-0.6
5,077,063	+		GFF5084	0.56	-1.5
5,077,065	-		GFF5084	0.56	-0.4
5,077,065	-		GFF5084	0.56	-1.5
5,077,065	-		GFF5084	0.56	-1.1
5,077,066	-		GFF5084	0.56	-0.9
5,077,066	-		GFF5084	0.56	+0.3
5,077,066	-		GFF5084	0.56	-1.1
5,077,086	+		GFF5084	0.58	-2.0
5,077,094	-		GFF5084	0.59	+0.3
5,077,094	-		GFF5084	0.59	-2.1
5,077,094	-		GFF5084	0.59	+0.7
5,077,127	-		GFF5084	0.64	-1.0
5,077,134	+		GFF5084	0.64	-0.0
5,077,149	-		GFF5084	0.66	-0.6
5,077,159	-		GFF5084	0.68	-2.2
5,077,160	-		GFF5084	0.68	-2.3
5,077,170	+		GFF5084	0.69	-0.7
5,077,178	-		GFF5084	0.70	-2.9
5,077,178	-		GFF5084	0.70	-0.1
5,077,187	+		GFF5084	0.71	-0.9
5,077,192	+		GFF5084	0.72	-2.0
5,077,192	+		GFF5084	0.72	-0.6
5,077,192	+		GFF5084	0.72	-1.1
5,077,195	-		GFF5084	0.72	-0.5
5,077,195	-		GFF5084	0.72	+0.3
5,077,195	-		GFF5084	0.72	-0.9
5,077,200	-		GFF5084	0.73	-0.2
5,077,200	-		GFF5084	0.73	-2.0
5,077,200	-		GFF5084	0.73	-0.1
5,077,200	-		GFF5084	0.73	-0.7
5,077,202	+		GFF5084	0.73	-0.0
5,077,202	+		GFF5084	0.73	+0.5
5,077,205	-		GFF5084	0.73	-1.0
5,077,210	-		GFF5084	0.74	-0.7
5,077,210	-		GFF5084	0.74	-1.2
5,077,218	+		GFF5084	0.75	-0.6
5,077,218	+		GFF5084	0.75	-2.0
5,077,218	+		GFF5084	0.75	-0.3
5,077,218	+		GFF5084	0.75	-2.3
5,077,220	-		GFF5084	0.75	-1.0
5,077,230	+		GFF5084	0.76	-2.1
5,077,236	-		GFF5084	0.77	-1.3
5,077,249	+		GFF5084	0.79	-1.0
5,077,257	-		GFF5084	0.80	-2.5
5,077,257	-		GFF5084	0.80	-0.6
5,077,257	-		GFF5084	0.80	-1.1
5,077,257	-		GFF5084	0.80	+0.0
5,077,267	+		GFF5084	0.81	-0.0
5,077,281	+		GFF5084	0.83	-1.9
5,077,289	-		GFF5084	0.84	-2.6
5,077,306	+		GFF5084	0.86	+1.5
5,077,322	+		GFF5084	0.88	-0.7
5,077,322	+		GFF5084	0.88	-1.7
5,077,326	+		GFF5084	0.88	-0.7
5,077,330	-		GFF5084	0.89	+0.1
5,077,332	+		GFF5084	0.89	-0.0
5,077,332	+		GFF5084	0.89	-0.5
5,077,332	+		GFF5084	0.89	-2.7
5,077,332	+		GFF5084	0.89	-1.3
5,077,332	+		GFF5084	0.89	-0.5
5,077,332	+		GFF5084	0.89	-0.9
5,077,334	-		GFF5084	0.89	-0.6
5,077,334	-		GFF5084	0.89	-3.3
5,077,334	-		GFF5084	0.89	-0.2
5,077,340	-				-0.6
5,077,340	-				-0.6
5,077,340	-				+0.2
5,077,340	-				-1.1
5,077,340	-				-1.9
5,077,340	-				-0.9
5,077,340	-				-1.1
5,077,340	-				+0.8
5,077,341	-				-3.1
5,077,361	+				-0.5
5,077,369	-				-0.1
5,077,373	-				-0.5
5,077,396	+				-1.3
5,077,396	+				-0.2
5,077,396	+				-0.6
5,077,396	+				-3.3
5,077,396	+				-1.3
5,077,396	+				+0.4
5,077,399	-				+0.3
5,077,401	+				-0.1
5,077,401	+				-2.0
5,077,401	+				-2.0
5,077,404	-				-0.2
5,077,404	-				-1.2
5,077,404	-				-1.4
5,077,404	-				+0.2
5,077,404	-				-0.7
5,077,404	-				-0.8
5,077,404	-				-0.3
5,077,404	-				-2.2
5,077,409	-				-0.8
5,077,409	-				-1.0
5,077,409	-				+0.0
5,077,409	-				-0.2
5,077,409	-				-2.9
5,077,414	-				-1.4
5,077,414	-				-1.0
5,077,414	-				-0.3
5,077,417	-				-2.8
5,077,418	+				-2.0
5,077,429	-				-1.8
5,077,452	+				-0.9
5,077,465	+				-1.6
5,077,467	+				-1.3
5,077,473	-				-2.0
5,077,473	-				-0.8
5,077,513	+				-0.2
5,077,526	-				-1.7
5,077,529	+				-0.6
5,077,578	+				+0.3
5,077,607	+				-0.4
5,077,610	-				+1.2
5,077,612	+				-1.5
5,077,620	-				-0.7
5,077,620	-				-0.2
5,077,625	-				-2.7
5,077,629	-				-2.0
5,077,638	+		GFF5085	0.11	+0.2
5,077,661	+		GFF5085	0.13	+0.1
5,077,665	+		GFF5085	0.13	-1.8
5,077,665	+		GFF5085	0.13	-0.8
5,077,692	-		GFF5085	0.16	-0.6
5,077,700	-		GFF5085	0.17	-0.6
5,077,717	-		GFF5085	0.19	-1.4
5,077,731	-		GFF5085	0.20	+0.2
5,077,731	-		GFF5085	0.20	-0.6
5,077,732	+		GFF5085	0.21	-1.9
5,077,740	-		GFF5085	0.21	-0.8
5,077,745	-		GFF5085	0.22	-1.4
5,077,752	-		GFF5085	0.23	-1.3
5,077,782	-		GFF5085	0.26	-1.6
5,077,785	+		GFF5085	0.26	-1.5
5,077,789	+		GFF5085	0.27	-2.0
5,077,791	+		GFF5085	0.27	+0.4
5,077,791	+		GFF5085	0.27	-1.9
5,077,791	+		GFF5085	0.27	-1.2
5,077,791	+		GFF5085	0.27	-0.8
5,077,791	+		GFF5085	0.27	-1.7
5,077,791	+		GFF5085	0.27	-1.3
5,077,799	+		GFF5085	0.28	-1.8
5,077,799	-		GFF5085	0.28	-1.6
5,077,799	-		GFF5085	0.28	-0.7
5,077,799	-		GFF5085	0.28	-1.4
5,077,799	-		GFF5085	0.28	-2.3
5,077,799	-		GFF5085	0.28	-1.4
5,077,801	+		GFF5085	0.28	-1.3
5,077,815	-		GFF5085	0.29	-0.5
5,077,815	-		GFF5085	0.29	+0.0
5,077,817	-		GFF5085	0.30	-0.8
5,077,817	-		GFF5085	0.30	-0.3
5,077,830	+		GFF5085	0.31	-1.1
5,077,833	+		GFF5085	0.31	-1.0
5,077,840	+		GFF5085	0.32	-2.0
5,077,840	+		GFF5085	0.32	-0.4
5,077,840	+		GFF5085	0.32	-0.3
5,077,840	+		GFF5085	0.32	-1.8
5,077,840	+		GFF5085	0.32	-2.3
5,077,848	-		GFF5085	0.33	-1.3
5,077,848	-		GFF5085	0.33	-1.3
5,077,848	-		GFF5085	0.33	-1.3
5,077,848	-		GFF5085	0.33	-2.8
5,077,848	-		GFF5085	0.33	+0.6
5,077,848	-		GFF5085	0.33	-2.4
5,077,848	-		GFF5085	0.33	-1.5
5,077,851	+		GFF5085	0.33	-1.3
5,077,851	+		GFF5085	0.33	-1.0
5,077,874	+		GFF5085	0.36	-1.0
5,077,903	+		GFF5085	0.39	-0.1
5,077,904	+		GFF5085	0.39	-2.1
5,077,904	+		GFF5085	0.39	+0.5
5,077,904	+		GFF5085	0.39	-1.3
5,077,912	-		GFF5085	0.40	-1.2
5,077,929	-		GFF5085	0.42	-0.8
5,077,929	-		GFF5085	0.42	-1.8
5,077,929	-		GFF5085	0.42	-1.4
5,077,951	+		GFF5085	0.44	-1.4
5,077,959	-		GFF5085	0.45	-0.8
5,077,961	+		GFF5085	0.45	-0.4
5,077,961	+		GFF5085	0.45	-0.8
5,077,982	+		GFF5085	0.47	+0.9
5,077,987	+		GFF5085	0.48	+0.0
5,077,996	-		GFF5085	0.49	-2.3
5,078,015	+		GFF5085	0.51	-0.4
5,078,023	-		GFF5085	0.51	-1.7
5,078,032	-		GFF5085	0.52	-0.8
5,078,038	+		GFF5085	0.53	-1.8
5,078,039	+		GFF5085	0.53	-2.4
5,078,058	-		GFF5085	0.55	-1.3
5,078,060	+		GFF5085	0.55	-0.4
5,078,060	+		GFF5085	0.55	-0.9
5,078,060	+		GFF5085	0.55	-0.9
5,078,060	+		GFF5085	0.55	+0.3
5,078,068	-		GFF5085	0.56	-1.4
5,078,068	-		GFF5085	0.56	-1.6
5,078,119	+		GFF5085	0.62	-1.1
5,078,135	+		GFF5085	0.63	-2.0
5,078,143	-		GFF5085	0.64	-2.0
5,078,182	-		GFF5085	0.68	-0.2
5,078,193	-		GFF5085	0.70	-1.6
5,078,234	+		GFF5085	0.74	-1.4
5,078,249	-		GFF5085	0.75	-1.0
5,078,255	-		GFF5085	0.76	-1.8
5,078,255	-		GFF5085	0.76	-0.6
5,078,255	-		GFF5085	0.76	-1.6
5,078,255	-		GFF5085	0.76	-1.0
5,078,257	+		GFF5085	0.76	-0.1
5,078,287	-		GFF5085	0.80	-0.7
5,078,302	+		GFF5085	0.81	-0.3
5,078,320	+		GFF5085	0.83	+0.0
5,078,328	-		GFF5085	0.84	-0.0
5,078,328	-		GFF5085	0.84	-0.1
5,078,352	-		GFF5085	0.86	-1.6
5,078,361	+		GFF5085	0.87	-0.4
5,078,361	+		GFF5085	0.87	-0.7
5,078,361	+		GFF5085	0.87	-1.7
5,078,361	+		GFF5085	0.87	-0.5
5,078,369	-		GFF5085	0.88	-0.9
5,078,369	-		GFF5085	0.88	-0.5
5,078,369	-		GFF5085	0.88	+0.6
5,078,369	-		GFF5085	0.88	-1.0
5,078,369	-		GFF5085	0.88	-1.1
5,078,375	-		GFF5085	0.89	+0.3
5,078,383	+		GFF5085	0.90	+0.7
5,078,404	-				-1.8
5,078,409	+				-0.8
5,078,419	-				-2.9
5,078,425	-				-0.8
5,078,430	+				+0.9
5,078,430	+				-1.1
5,078,438	-				-0.7
5,078,438	-				-1.3
5,078,438	-				-1.7
5,078,438	-				-0.2
5,078,441	-				-1.0
5,078,458	-				-1.4
5,078,474	+				-1.5
5,078,474	+				-2.3
5,078,474	+				-1.3
5,078,474	+				-2.0
5,078,474	+				-0.3
5,078,482	-				-2.4
5,078,482	-				+0.5
5,078,482	-				+0.2
5,078,482	-				-1.6
5,078,482	-				+0.6
5,078,482	-				-0.1
5,078,482	-				-1.5
5,078,482	-				-1.5
5,078,482	-				-0.9
5,078,482	-				-0.7
5,078,509	-				+0.4
5,078,509	-				-1.0
5,078,531	+		GFF5086	0.13	-1.7
5,078,531	+		GFF5086	0.13	+0.5
5,078,534	-		GFF5086	0.14	-2.5
5,078,536	+		GFF5086	0.15	-2.4
5,078,536	+		GFF5086	0.15	-0.5
5,078,536	+		GFF5086	0.15	-1.5
5,078,539	-		GFF5086	0.16	+0.0
5,078,539	-		GFF5086	0.16	-1.6
5,078,544	-		GFF5086	0.18	-1.7
5,078,546	-		GFF5086	0.18	-0.8
5,078,561	+		GFF5086	0.23	-0.6
5,078,566	+		GFF5086	0.25	-2.2
5,078,567	+		GFF5086	0.25	-1.8
5,078,575	-		GFF5086	0.28	-0.7
5,078,575	-		GFF5086	0.28	-0.4
5,078,575	-		GFF5086	0.28	-1.4
5,078,577	+		GFF5086	0.28	-2.2
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5,078,588	+		GFF5086	0.32	-1.7
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5,078,680	+		GFF5086	0.61	-2.4
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5,078,715	+		GFF5086	0.72	-1.8
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5,078,781	-				-1.1
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5,078,796	+				-2.3
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5,078,796	+				-1.3
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5,078,796	+				-1.3
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5,078,804	-				-1.3
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5,078,804	-				+0.3
5,078,804	-				-0.8
5,078,804	-				-2.1
5,078,804	-				-0.5
5,078,804	-				-0.7
5,078,804	-				-1.2
5,078,814	-				+0.3
5,078,814	-				+0.2
5,078,821	+				-2.0
5,078,821	+				-1.1
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5,078,821	+				-1.1
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5,078,821	+				-0.8
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5,078,829	-				-1.1
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5,078,829	-				-1.1
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5,079,204	-		GFF5087	0.40	-1.9
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5,079,320	+		GFF5087	0.51	-1.2
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5,079,387	-		GFF5087	0.58	-2.6
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5,079,387	-		GFF5087	0.58	-2.1
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5,079,455	+		GFF5087	0.65	-1.1
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5,079,460	+		GFF5087	0.65	-0.8
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5,079,468	+		GFF5087	0.66	-2.2
5,079,468	-		GFF5087	0.66	-2.4