Strain Fitness in Sphingobium sp. HT1-2 around GFF4995

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,992,040	-				-1.1
4,992,040	-				+0.2
4,992,098	+				-0.6
4,992,098	+				-0.7
4,992,127	-				+1.0
4,992,127	-				-0.4
4,992,131	-				+1.7
4,992,185	-				+0.0
4,992,230	+				-0.9
4,992,230	+				-1.1
4,992,235	+				-0.4
4,992,243	-				+0.4
4,992,243	-				-0.1
4,992,245	+				-0.9
4,992,265	+				-0.1
4,992,323	-		GFF4993	0.25	+1.1
4,992,341	+		GFF4993	0.43	+0.6
4,992,353	+		GFF4993	0.55	-0.6
4,992,353	+		GFF4993	0.55	-0.7
4,992,353	+		GFF4993	0.55	-0.7
4,992,359	-		GFF4993	0.61	-0.0
4,992,359	-		GFF4993	0.61	-0.6
4,992,360	+		GFF4993	0.62	+0.7
4,992,360	+		GFF4993	0.62	+0.6
4,992,361	-		GFF4993	0.63	-1.2
4,992,361	-		GFF4993	0.63	-1.2
4,992,361	-		GFF4993	0.63	+0.7
4,992,364	-		GFF4993	0.66	-0.9
4,992,374	+		GFF4993	0.75	-0.5
4,992,374	+		GFF4993	0.75	-0.6
4,992,374	+		GFF4993	0.75	-1.5
4,992,374	+		GFF4993	0.75	-0.3
4,992,381	+		GFF4993	0.82	-0.3
4,992,381	+		GFF4993	0.82	-0.2
4,992,382	-		GFF4993	0.83	-0.8
4,992,382	-		GFF4993	0.83	-2.0
4,992,382	-		GFF4993	0.83	-1.3
4,992,389	-				+0.3
4,992,419	+		GFF4994	0.14	+0.8
4,992,419	+		GFF4994	0.14	-0.7
4,992,427	-		GFF4994	0.19	-0.8
4,992,474	+		GFF4994	0.50	-0.3
4,992,487	-		GFF4994	0.58	+0.6
4,992,487	-		GFF4994	0.58	-0.2
4,992,491	+		GFF4994	0.61	+0.7
4,992,494	-		GFF4994	0.63	-0.0
4,992,494	-		GFF4994	0.63	-1.2
4,992,496	+		GFF4994	0.64	-0.6
4,992,504	-		GFF4994	0.69	-1.3
4,992,504	-		GFF4994	0.69	-0.5
4,992,514	-		GFF4994	0.76	+0.4
4,992,531	+		GFF4994	0.87	+1.2
4,992,531	+		GFF4994	0.87	+0.7
4,992,531	+		GFF4994	0.87	-0.2
4,992,531	+		GFF4994	0.87	-0.6
4,992,531	+		GFF4994	0.87	+1.2
4,992,531	+		GFF4994	0.87	-1.4
4,992,531	+		GFF4994	0.87	-0.1
4,992,531	+		GFF4994	0.87	-2.2
4,992,531	+		GFF4994	0.87	+0.4
4,992,531	+		GFF4994	0.87	-0.9
4,992,539	-				+0.1
4,992,539	-				-0.7
4,992,539	-				+0.7
4,992,539	-				+1.4
4,992,575	+				-0.5
4,992,575	+				+0.3
4,992,575	+				+0.3
4,992,575	+				-1.0
4,992,575	+				+0.5
4,992,575	+				-0.1
4,992,575	+				+1.4
4,992,575	+				-0.8
4,992,575	+				+1.0
4,992,575	+				+0.1
4,992,575	+				+0.3
4,992,575	+				-0.6
4,992,575	+				-0.7
4,992,575	+				-0.7
4,992,575	+				-1.0
4,992,575	+				-0.7
4,992,575	+				+0.8
4,992,575	+				+1.0
4,992,575	+				-0.6
4,992,583	-				+0.1
4,992,583	-				-0.1
4,992,583	-				+0.1
4,992,583	-				-0.8
4,992,583	-				-1.0
4,992,583	-				-1.3
4,992,583	-				+1.8
4,992,583	-				-0.1
4,992,583	-				-0.9
4,992,583	-				+0.8
4,992,583	-				-0.7
4,992,583	-				-1.2
4,992,583	-				-0.1
4,992,583	-				+0.1
4,992,583	-				-2.0
4,992,583	-				-1.0
4,992,583	-				+1.1
4,992,583	-				+1.4
4,992,583	-				-0.5
4,992,583	-				-1.8
4,992,583	-				-0.5
4,992,639	+				-0.0
4,992,639	+				-2.7
4,992,647	-				-1.1
4,992,647	-				+0.6
4,992,647	-				+0.4
4,992,647	-				-1.5
4,992,651	-				-0.1
4,992,668	-				-0.5
4,992,706	+				-0.2
4,992,761	+				-2.0
4,992,771	+				+0.3
4,992,771	+				-0.3
4,992,771	+				-1.3
4,992,771	+				+1.1
4,992,771	+				+0.5
4,992,773	+				+0.1
4,992,779	-				+0.4
4,992,828	-				+0.6
4,992,862	+				-1.5
4,992,944	+				-0.5
4,992,946	+				-1.3
4,992,974	+				-0.1
4,992,974	+				-0.0
4,992,988	+				+0.1
4,993,004	-				-0.6
4,993,012	+				+0.1
4,993,012	+				-1.2
4,993,012	+				+0.8
4,993,025	-				-0.7
4,993,028	+				-0.6
4,993,028	+				+0.5
4,993,028	+				+0.2
4,993,028	+				+0.3
4,993,036	-				-0.6
4,993,036	-				-0.5
4,993,036	-				-0.4
4,993,036	-				+0.9
4,993,050	+				-0.7
4,993,074	+		GFF4995	0.17	-0.4
4,993,082	-		GFF4995	0.20	-1.6
4,993,084	+		GFF4995	0.20	-0.4
4,993,084	+		GFF4995	0.20	+0.3
4,993,087	+		GFF4995	0.21	+1.1
4,993,092	-		GFF4995	0.23	+0.7
4,993,097	-		GFF4995	0.25	-0.0
4,993,107	+		GFF4995	0.28	-0.4
4,993,107	+		GFF4995	0.28	+1.5
4,993,107	+		GFF4995	0.28	+0.4
4,993,107	+		GFF4995	0.28	-0.6
4,993,115	-		GFF4995	0.30	-1.9
4,993,115	-		GFF4995	0.30	-0.2
4,993,115	-		GFF4995	0.30	-0.3
4,993,124	-		GFF4995	0.33	-1.2
4,993,125	-		GFF4995	0.34	+1.1
4,993,136	+		GFF4995	0.37	-0.1
4,993,291	+		GFF4995	0.87	-0.1
4,993,291	+		GFF4995	0.87	-0.8
4,993,294	-		GFF4995	0.88	-0.1
4,993,294	-		GFF4995	0.88	-0.5
4,993,296	+		GFF4995	0.89	+0.2
4,993,299	-				-0.7
4,993,318	+				-0.5
4,993,329	+				+1.5
4,993,329	+				+0.5
4,993,339	+				-1.2
4,993,376	+				-0.8
4,993,383	-				+0.4
4,993,384	-				-1.5
4,993,384	-				+0.1
4,993,439	+				+0.6
4,993,439	+				-0.1
4,993,439	+				-1.0
4,993,447	-				-0.6
4,993,447	-				-1.5
4,993,447	-				-0.8
4,993,449	+				+0.9
4,993,457	-				-0.0
4,993,476	+				+0.7
4,993,500	+				-0.5
4,993,500	+				+0.9
4,993,500	+				-2.2
4,993,500	+				-0.9
4,993,508	-				-0.9
4,993,518	-				-0.5
4,993,522	-				-0.7
4,993,548	+				-1.1
4,993,548	+				+1.0
4,993,548	+				+1.1
4,993,548	+				-1.0
4,993,548	+				-2.2
4,993,548	+				-1.7
4,993,548	+				+0.7
4,993,548	+				-0.1
4,993,548	+				+1.0
4,993,548	+				-1.0
4,993,548	+				+0.1
4,993,548	+				-0.3
4,993,548	+				+1.6
4,993,548	+				-0.1
4,993,548	+				-1.3
4,993,548	+				-2.1
4,993,548	+				-0.8
4,993,553	+				-0.0
4,993,553	+				-0.4
4,993,553	+				-0.7
4,993,554	+				+0.5
4,993,556	-				-1.7
4,993,556	-				-0.0
4,993,556	-				+0.3
4,993,556	-				-0.5
4,993,556	-				-0.5
4,993,556	-				+0.7
4,993,556	-				-0.6
4,993,556	-				+0.1
4,993,556	-				+0.3
4,993,556	-				+0.8
4,993,556	-				+0.5
4,993,556	-				-0.1
4,993,556	-				-0.6
4,993,556	-				+0.5
4,993,568	+				-0.2
4,993,569	+				-0.4
4,993,569	+				-1.3
4,993,569	+				-0.6
4,993,569	+				+1.1
4,993,569	+				-0.8
4,993,569	+				-1.0
4,993,576	-				+0.5
4,993,577	-				-0.3
4,993,577	-				-1.1
4,993,577	-				-0.8
4,993,577	-				+0.7
4,993,577	-				-1.1
4,993,585	+				+1.0
4,993,586	+				-0.6
4,993,610	+				-0.1
4,993,610	+				-0.7
4,993,610	+				-0.8
4,993,610	-				-1.3
4,993,623	-				+0.2
4,993,635	+				-0.5
4,993,636	-				-1.5
4,993,636	-				-1.4
4,993,636	-				+1.1
4,993,636	-				+0.1
4,993,643	-				-1.3
4,993,666	+				-1.8
4,993,666	+				-0.5
4,993,667	+				-0.6
4,993,697	+		GFF4996	0.13	+0.5
4,993,703	+		GFF4996	0.16	-2.5
4,993,705	-		GFF4996	0.17	-1.7
4,993,705	-		GFF4996	0.17	-1.7
4,993,709	+		GFF4996	0.18	-1.4
4,993,709	+		GFF4996	0.18	-0.6
4,993,712	-		GFF4996	0.19	-0.6
4,993,712	-		GFF4996	0.19	-0.0
4,993,712	-		GFF4996	0.19	+0.9
4,993,712	-		GFF4996	0.19	+0.5
4,993,714	+		GFF4996	0.20	-0.5
4,993,717	-		GFF4996	0.21	+0.9
4,993,717	-		GFF4996	0.21	-0.2
4,993,717	-		GFF4996	0.21	-1.1
4,993,754	+		GFF4996	0.36	-1.0
4,993,757	+		GFF4996	0.37	-0.6
4,993,762	-		GFF4996	0.39	+0.3
4,993,764	+		GFF4996	0.40	-1.3
4,993,765	-		GFF4996	0.40	-0.6
4,993,770	-		GFF4996	0.42	-2.2
4,993,792	-		GFF4996	0.51	+0.3
4,993,792	-		GFF4996	0.51	-0.5
4,993,792	-		GFF4996	0.51	-0.5
4,993,792	-		GFF4996	0.51	+0.9
4,993,792	-		GFF4996	0.51	+0.7
4,993,808	+		GFF4996	0.58	-0.6
4,993,816	-		GFF4996	0.61	+0.7
4,993,816	-		GFF4996	0.61	+1.0
4,993,816	-		GFF4996	0.61	+0.9
4,993,823	-		GFF4996	0.63	+1.4
4,993,830	-		GFF4996	0.66	-0.3
4,993,889	+				+0.9
4,993,907	-				+0.9
4,993,915	+				-1.9
4,993,918	+				+0.3
4,993,918	+				+0.7
4,993,918	+				-1.4
4,993,921	+				+0.6
4,994,001	-				-0.6
4,994,006	-				+1.5
4,994,106	-		GFF4997	0.46	+0.7
4,994,121	-		GFF4997	0.54	+0.3
4,994,121	-		GFF4997	0.54	-1.0
4,994,121	-		GFF4997	0.54	-1.2
4,994,145	+		GFF4997	0.66	-0.5
4,994,151	-		GFF4997	0.69	-0.5
4,994,159	-		GFF4997	0.73	-0.4
4,994,159	-		GFF4997	0.73	+0.3
4,994,159	-		GFF4997	0.73	+0.5
4,994,166	-		GFF4997	0.76	-0.6
4,994,194	-				-1.8
4,994,208	+				+0.3
4,994,213	+				+0.3
4,994,241	+				-0.0
4,994,249	-				-0.9
4,994,282	+				+0.7
4,994,282	+				-0.7
4,994,287	+				-0.9
4,994,288	+				-2.2
4,994,290	-				+0.5
4,994,295	-				-0.2
4,994,310	+				-0.6
4,994,310	+				-0.0
4,994,318	-				-0.7