Strain Fitness in Sphingobium sp. HT1-2 around GFF4922

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,913,567	+				+0.2
4,913,573	+				+0.4
4,913,581	+				+0.0
4,913,609	+				+1.2
4,913,655	-				-0.7
4,913,679	+				-0.7
4,913,684	+				-0.8
4,913,684	+				-0.5
4,913,692	-				+0.6
4,913,705	+				-1.6
4,913,715	-				-1.5
4,913,720	+				-1.0
4,913,733	-				-1.6
4,913,740	-				-0.8
4,913,752	+				-0.7
4,913,752	+				-0.9
4,913,752	+				-0.7
4,913,752	+				-0.5
4,913,752	+				-1.7
4,913,752	+				-2.2
4,913,752	+				-1.2
4,913,754	-				-0.6
4,913,754	-				-1.1
4,913,760	-				-0.5
4,913,760	-				-0.3
4,913,775	+		GFF4921	0.11	-1.9
4,913,779	-		GFF4921	0.11	-1.0
4,913,792	+		GFF4921	0.13	-0.7
4,913,793	+		GFF4921	0.13	+0.2
4,913,798	+		GFF4921	0.13	-1.1
4,913,808	+		GFF4921	0.15	-1.1
4,913,836	-		GFF4921	0.18	+0.0
4,913,868	-		GFF4921	0.22	-1.2
4,913,870	+		GFF4921	0.22	+0.1
4,913,870	+		GFF4921	0.22	-0.1
4,913,873	-		GFF4921	0.23	-0.8
4,913,876	+		GFF4921	0.23	-1.4
4,913,884	-		GFF4921	0.24	-1.0
4,913,888	+		GFF4921	0.24	+0.2
4,913,888	+		GFF4921	0.24	+0.5
4,913,902	+		GFF4921	0.26	+0.6
4,913,910	-		GFF4921	0.27	+0.5
4,913,910	-		GFF4921	0.27	-0.7
4,913,911	-		GFF4921	0.27	-0.3
4,913,914	-		GFF4921	0.28	-1.2
4,913,917	-		GFF4921	0.28	-1.3
4,913,948	+		GFF4921	0.32	-1.0
4,914,014	+		GFF4921	0.40	+0.5
4,914,015	-		GFF4921	0.40	-1.2
4,914,032	+		GFF4921	0.42	+1.4
4,914,032	+		GFF4921	0.42	-0.0
4,914,037	+		GFF4921	0.43	-0.7
4,914,040	-		GFF4921	0.43	-0.4
4,914,040	-		GFF4921	0.43	-2.7
4,914,040	-		GFF4921	0.43	-2.0
4,914,065	+		GFF4921	0.46	-0.2
4,914,065	+		GFF4921	0.46	+0.8
4,914,065	+		GFF4921	0.46	+0.8
4,914,065	+		GFF4921	0.46	-0.4
4,914,065	+		GFF4921	0.46	-1.9
4,914,065	+		GFF4921	0.46	-0.8
4,914,065	+		GFF4921	0.46	-0.8
4,914,073	-		GFF4921	0.47	-0.3
4,914,073	-		GFF4921	0.47	-1.1
4,914,073	-		GFF4921	0.47	+1.0
4,914,073	-		GFF4921	0.47	-1.2
4,914,083	-		GFF4921	0.48	-1.4
4,914,117	-		GFF4921	0.52	-1.3
4,914,120	-		GFF4921	0.53	-1.4
4,914,120	-		GFF4921	0.53	+1.9
4,914,129	+		GFF4921	0.54	+0.4
4,914,129	+		GFF4921	0.54	+0.1
4,914,129	+		GFF4921	0.54	-1.4
4,914,129	+		GFF4921	0.54	-1.0
4,914,129	+		GFF4921	0.54	-0.4
4,914,129	+		GFF4921	0.54	-1.0
4,914,129	+		GFF4921	0.54	+0.3
4,914,136	+		GFF4921	0.55	-1.1
4,914,136	-		GFF4921	0.55	-0.8
4,914,137	-		GFF4921	0.55	-0.9
4,914,137	-		GFF4921	0.55	-0.8
4,914,137	-		GFF4921	0.55	-1.4
4,914,137	-		GFF4921	0.55	-1.3
4,914,137	-		GFF4921	0.55	-0.9
4,914,137	-		GFF4921	0.55	-3.4
4,914,142	+		GFF4921	0.55	-1.1
4,914,144	-		GFF4921	0.56	-0.6
4,914,152	+		GFF4921	0.57	-1.5
4,914,152	+		GFF4921	0.57	-1.5
4,914,153	-		GFF4921	0.57	-1.1
4,914,171	-		GFF4921	0.59	+0.2
4,914,218	-		GFF4921	0.65	-1.4
4,914,223	-		GFF4921	0.65	+0.1
4,914,223	-		GFF4921	0.65	+1.0
4,914,227	+		GFF4921	0.66	-1.5
4,914,227	+		GFF4921	0.66	-2.4
4,914,230	-		GFF4921	0.66	-0.8
4,914,230	-		GFF4921	0.66	+0.3
4,914,232	+		GFF4921	0.66	-0.9
4,914,232	+		GFF4921	0.66	-0.5
4,914,232	+		GFF4921	0.66	-1.1
4,914,235	-		GFF4921	0.67	-1.8
4,914,235	-		GFF4921	0.67	+0.1
4,914,235	-		GFF4921	0.67	-0.7
4,914,236	-		GFF4921	0.67	-1.3
4,914,237	+		GFF4921	0.67	-0.7
4,914,240	-		GFF4921	0.67	-0.7
4,914,240	-		GFF4921	0.67	-1.9
4,914,240	-		GFF4921	0.67	-1.4
4,914,254	+		GFF4921	0.69	-0.5
4,914,261	+		GFF4921	0.70	-1.6
4,914,261	+		GFF4921	0.70	+0.6
4,914,262	+		GFF4921	0.70	-2.6
4,914,283	+		GFF4921	0.73	-1.0
4,914,285	+		GFF4921	0.73	+1.8
4,914,291	-		GFF4921	0.74	-0.1
4,914,293	-		GFF4921	0.74	-1.1
4,914,298	+		GFF4921	0.74	-1.3
4,914,303	+		GFF4921	0.75	+0.9
4,914,303	+		GFF4921	0.75	-0.0
4,914,303	+		GFF4921	0.75	+0.1
4,914,303	+		GFF4921	0.75	+0.6
4,914,308	+		GFF4921	0.76	-2.0
4,914,308	+		GFF4921	0.76	-0.5
4,914,311	-		GFF4921	0.76	+0.3
4,914,311	-		GFF4921	0.76	-0.9
4,914,311	-		GFF4921	0.76	+1.1
4,914,311	-		GFF4921	0.76	+0.6
4,914,311	-		GFF4921	0.76	-0.5
4,914,311	-		GFF4921	0.76	-2.2
4,914,318	+		GFF4921	0.77	-1.8
4,914,320	+		GFF4921	0.77	-0.8
4,914,320	+		GFF4921	0.77	-0.5
4,914,321	-		GFF4921	0.77	+0.2
4,914,322	+		GFF4921	0.77	-1.2
4,914,322	+		GFF4921	0.77	-1.2
4,914,322	+		GFF4921	0.77	+0.5
4,914,322	+		GFF4921	0.77	-1.3
4,914,322	+		GFF4921	0.77	-0.1
4,914,326	-		GFF4921	0.78	-1.0
4,914,330	-		GFF4921	0.78	-0.7
4,914,330	-		GFF4921	0.78	-2.3
4,914,330	-		GFF4921	0.78	-0.8
4,914,366	+		GFF4921	0.83	-0.7
4,914,371	+		GFF4921	0.83	-0.9
4,914,377	+		GFF4921	0.84	-2.3
4,914,379	-		GFF4921	0.84	-0.9
4,914,398	-		GFF4921	0.87	+0.7
4,914,424	+		GFF4921	0.90	-0.8
4,914,427	-				+1.4
4,914,432	-				-0.1
4,914,432	-				-1.6
4,914,433	-				-0.6
4,914,464	-				-2.0
4,914,467	-				-0.4
4,914,489	+				-1.1
4,914,554	-				-1.0
4,914,554	-				-1.9
4,914,556	+				-1.0
4,914,556	+				-1.2
4,914,569	+				-0.8
4,914,571	+				-1.2
4,914,574	-				-0.6
4,914,576	+				-1.4
4,914,576	+				-0.8
4,914,576	+				-2.1
4,914,576	+				+0.1
4,914,576	+				-0.4
4,914,576	+				+0.2
4,914,577	-				-1.1
4,914,577	-				-1.7
4,914,579	-				-0.9
4,914,582	-				+0.1
4,914,584	-				-0.2
4,914,584	-				-1.0
4,914,584	-				-1.5
4,914,584	-				-0.9
4,914,584	-				+0.3
4,914,584	-				-0.8
4,914,595	+				+1.3
4,914,603	-				-1.0
4,914,603	-				-0.8
4,914,614	+				-2.4
4,914,626	-		GFF4922	0.11	+0.8
4,914,626	-		GFF4922	0.11	-0.1
4,914,626	-		GFF4922	0.11	+1.3
4,914,630	+		GFF4922	0.11	+2.0
4,914,649	+		GFF4922	0.14	-1.0
4,914,676	+		GFF4922	0.18	+1.0
4,914,683	+		GFF4922	0.18	+0.9
4,914,683	+		GFF4922	0.18	-1.3
4,914,683	-		GFF4922	0.18	-1.0
4,914,684	-		GFF4922	0.19	-0.8
4,914,691	-		GFF4922	0.20	-1.1
4,914,693	+		GFF4922	0.20	-1.4
4,914,701	-		GFF4922	0.21	-3.0
4,914,701	-		GFF4922	0.21	-1.2
4,914,720	+		GFF4922	0.23	+0.5
4,914,720	+		GFF4922	0.23	-1.0
4,914,720	+		GFF4922	0.23	-1.4
4,914,735	-		GFF4922	0.25	-1.3
4,914,735	-		GFF4922	0.25	-0.8
4,914,745	-		GFF4922	0.27	-1.6
4,914,745	-		GFF4922	0.27	-1.5
4,914,769	+		GFF4922	0.30	-0.8
4,914,777	-		GFF4922	0.31	+0.2
4,914,777	-		GFF4922	0.31	-1.9
4,914,780	+		GFF4922	0.31	+0.9
4,914,785	+		GFF4922	0.32	-1.2
4,914,786	+		GFF4922	0.32	-2.1
4,914,794	-		GFF4922	0.33	-1.1
4,914,794	-		GFF4922	0.33	-0.5
4,914,794	-		GFF4922	0.33	+0.9
4,914,796	+		GFF4922	0.33	-1.7
4,914,805	+		GFF4922	0.35	-0.7
4,914,829	-		GFF4922	0.38	-0.3
4,914,838	-		GFF4922	0.39	-0.1
4,914,870	-		GFF4922	0.43	-0.0
4,914,872	+		GFF4922	0.44	-2.5
4,914,877	+		GFF4922	0.44	-1.8
4,914,880	-		GFF4922	0.45	+0.5
4,914,881	+		GFF4922	0.45	+0.4
4,914,881	+		GFF4922	0.45	-0.5
4,914,881	+		GFF4922	0.45	-1.0
4,914,882	-		GFF4922	0.45	-0.8
4,914,889	-		GFF4922	0.46	-1.8
4,914,889	-		GFF4922	0.46	-1.7
4,914,896	+		GFF4922	0.47	-0.4
4,914,896	+		GFF4922	0.47	-1.4
4,914,896	+		GFF4922	0.47	-1.6
4,914,896	+		GFF4922	0.47	-1.0
4,914,896	+		GFF4922	0.47	-0.4
4,914,904	-		GFF4922	0.48	-1.4
4,914,904	-		GFF4922	0.48	-2.6
4,914,904	-		GFF4922	0.48	-0.9
4,914,904	-		GFF4922	0.48	-1.4
4,914,904	-		GFF4922	0.48	-0.4
4,914,909	+		GFF4922	0.48	-0.9
4,914,912	-		GFF4922	0.49	-0.1
4,914,914	+		GFF4922	0.49	-2.0
4,914,917	-		GFF4922	0.50	+0.4
4,914,917	-		GFF4922	0.50	+0.5
4,914,919	-		GFF4922	0.50	-1.2
4,914,927	-		GFF4922	0.51	-1.8
4,914,960	+		GFF4922	0.55	-1.7
4,914,982	-		GFF4922	0.58	-0.5
4,914,991	-		GFF4922	0.59	-1.4
4,914,992	+		GFF4922	0.59	-0.7
4,914,992	+		GFF4922	0.59	-0.5
4,914,992	-		GFF4922	0.59	-1.3
4,915,000	-		GFF4922	0.61	-0.0
4,915,000	-		GFF4922	0.61	+0.4
4,915,000	-		GFF4922	0.61	-1.4
4,915,000	-		GFF4922	0.61	-1.3
4,915,015	-		GFF4922	0.63	-0.7
4,915,035	+		GFF4922	0.65	-0.9
4,915,036	+		GFF4922	0.65	-1.2
4,915,036	-		GFF4922	0.65	-0.2
4,915,044	-		GFF4922	0.66	-0.4
4,915,076	+		GFF4922	0.71	-1.7
4,915,081	+		GFF4922	0.71	-1.5
4,915,081	+		GFF4922	0.71	+0.3
4,915,083	+		GFF4922	0.72	+0.4
4,915,083	+		GFF4922	0.72	-2.9
4,915,084	-		GFF4922	0.72	+0.9
4,915,089	-		GFF4922	0.72	-1.4
4,915,115	+		GFF4922	0.76	-0.9
4,915,115	+		GFF4922	0.76	-1.4
4,915,115	+		GFF4922	0.76	-0.4
4,915,132	+		GFF4922	0.78	-1.1
4,915,135	-		GFF4922	0.78	+0.1
4,915,137	+		GFF4922	0.79	-1.7
4,915,137	+		GFF4922	0.79	-0.1
4,915,151	+		GFF4922	0.81	-1.2
4,915,151	+		GFF4922	0.81	-0.7
4,915,151	+		GFF4922	0.81	-0.5
4,915,151	+		GFF4922	0.81	-0.7
4,915,156	+		GFF4922	0.81	+0.4
4,915,159	-		GFF4922	0.82	-2.3
4,915,159	-		GFF4922	0.82	-2.4
4,915,196	-		GFF4922	0.87	-1.4
4,915,207	+		GFF4922	0.88	-0.6
4,915,214	+		GFF4922	0.89	-0.1
4,915,215	-		GFF4922	0.89	-0.7
4,915,221	+				-0.8
4,915,228	+				-1.9
4,915,237	+				-1.1
4,915,241	-				-1.1
4,915,245	-				+0.4
4,915,310	+				-0.8
4,915,312	-				-1.6
4,915,318	+				-1.0
4,915,421	-		GFF4923	0.14	-0.5
4,915,433	+		GFF4923	0.16	+0.7
4,915,433	-		GFF4923	0.16	-1.2
4,915,451	+		GFF4923	0.19	-0.9
4,915,457	+		GFF4923	0.20	-0.9
4,915,457	+		GFF4923	0.20	-1.3
4,915,458	-		GFF4923	0.20	+0.3
4,915,459	-		GFF4923	0.20	-0.9
4,915,459	-		GFF4923	0.20	-0.6
4,915,459	-		GFF4923	0.20	+0.2
4,915,476	+		GFF4923	0.23	-1.1
4,915,476	+		GFF4923	0.23	+0.1
4,915,484	-		GFF4923	0.24	+0.3
4,915,484	-		GFF4923	0.24	+0.2
4,915,484	-		GFF4923	0.24	-1.8
4,915,533	-		GFF4923	0.32	-0.7
4,915,566	+		GFF4923	0.38	-0.2
4,915,566	+		GFF4923	0.38	-0.7
4,915,566	+		GFF4923	0.38	-1.4
4,915,566	+		GFF4923	0.38	+0.1
4,915,566	+		GFF4923	0.38	+0.5
4,915,566	+		GFF4923	0.38	-1.6
4,915,571	+		GFF4923	0.39	-0.9
4,915,574	-		GFF4923	0.39	-0.1
4,915,574	-		GFF4923	0.39	-0.8
4,915,574	-		GFF4923	0.39	-1.5
4,915,574	-		GFF4923	0.39	-0.3
4,915,574	-		GFF4923	0.39	-1.2
4,915,574	-		GFF4923	0.39	-2.4
4,915,574	-		GFF4923	0.39	-1.3
4,915,574	-		GFF4923	0.39	-1.5
4,915,576	-		GFF4923	0.39	-1.6
4,915,593	+		GFF4923	0.42	-0.4
4,915,596	-		GFF4923	0.43	+1.3
4,915,596	-		GFF4923	0.43	-1.0
4,915,598	+		GFF4923	0.43	+1.9
4,915,598	+		GFF4923	0.43	+0.6
4,915,598	+		GFF4923	0.43	+0.2
4,915,598	+		GFF4923	0.43	+0.1
4,915,598	+		GFF4923	0.43	-1.9
4,915,598	+		GFF4923	0.43	-1.3
4,915,598	+		GFF4923	0.43	-0.3
4,915,598	+		GFF4923	0.43	+0.7
4,915,598	+		GFF4923	0.43	-0.1
4,915,598	+		GFF4923	0.43	-1.7
4,915,601	-		GFF4923	0.43	-1.0
4,915,603	+		GFF4923	0.44	-0.3
4,915,603	+		GFF4923	0.44	-1.4
4,915,603	+		GFF4923	0.44	-1.9
4,915,603	+		GFF4923	0.44	-1.1
4,915,603	+		GFF4923	0.44	-1.5
4,915,606	-		GFF4923	0.44	-1.5
4,915,606	-		GFF4923	0.44	-1.0
4,915,606	-		GFF4923	0.44	-0.7
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4,915,934	-				-1.5
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