Strain Fitness in Sphingobium sp. HT1-2 around GFF4907

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,899,169	-		GFF4906	0.70	+0.4
4,899,200	-		GFF4906	0.71	-0.2
4,899,248	-		GFF4906	0.73	+0.7
4,899,266	-		GFF4906	0.74	-2.1
4,899,270	+		GFF4906	0.74	-0.1
4,899,320	+		GFF4906	0.76	-1.8
4,899,328	-		GFF4906	0.76	-1.3
4,899,331	+		GFF4906	0.76	-1.0
4,899,331	+		GFF4906	0.76	-1.6
4,899,339	-		GFF4906	0.77	+0.7
4,899,339	-		GFF4906	0.77	-1.5
4,899,339	-		GFF4906	0.77	-0.7
4,899,339	-		GFF4906	0.77	-1.0
4,899,387	-		GFF4906	0.79	-1.0
4,899,400	+		GFF4906	0.79	+0.2
4,899,408	-		GFF4906	0.79	-1.6
4,899,408	-		GFF4906	0.79	-0.8
4,899,408	-		GFF4906	0.79	+0.8
4,899,412	+		GFF4906	0.80	-1.5
4,899,412	+		GFF4906	0.80	-1.0
4,899,420	-		GFF4906	0.80	-1.2
4,899,428	-		GFF4906	0.80	-0.2
4,899,444	+		GFF4906	0.81	+0.8
4,899,444	+		GFF4906	0.81	-0.4
4,899,450	-		GFF4906	0.81	-0.6
4,899,462	-		GFF4906	0.82	-0.7
4,899,466	-		GFF4906	0.82	-0.8
4,899,476	-		GFF4906	0.82	-0.6
4,899,483	-		GFF4906	0.82	-0.1
4,899,488	-		GFF4906	0.83	-2.1
4,899,493	+		GFF4906	0.83	-0.5
4,899,493	-		GFF4906	0.83	-1.9
4,899,493	-		GFF4906	0.83	-0.6
4,899,493	-		GFF4906	0.83	-0.6
4,899,501	-		GFF4906	0.83	-1.0
4,899,520	+		GFF4906	0.84	+0.1
4,899,546	+		GFF4906	0.85	-2.1
4,899,546	+		GFF4906	0.85	-1.3
4,899,546	+		GFF4906	0.85	-0.4
4,899,556	+		GFF4906	0.85	-1.1
4,899,556	+		GFF4906	0.85	-0.9
4,899,605	-		GFF4906	0.87	-1.1
4,899,641	+		GFF4906	0.89	+0.5
4,899,641	+		GFF4906	0.89	-1.9
4,899,641	+		GFF4906	0.89	-1.6
4,899,641	+		GFF4906	0.89	-0.3
4,899,641	+		GFF4906	0.89	-0.1
4,899,641	+		GFF4906	0.89	-1.3
4,899,641	+		GFF4906	0.89	-1.8
4,899,641	+		GFF4906	0.89	+0.5
4,899,641	+		GFF4906	0.89	-1.0
4,899,641	+		GFF4906	0.89	+0.2
4,899,641	+		GFF4906	0.89	+0.2
4,899,641	+		GFF4906	0.89	-2.0
4,899,649	-		GFF4906	0.89	+0.8
4,899,649	-		GFF4906	0.89	-0.6
4,899,649	-		GFF4906	0.89	-0.1
4,899,649	-		GFF4906	0.89	-1.3
4,899,649	-		GFF4906	0.89	+0.2
4,899,649	-		GFF4906	0.89	-0.6
4,899,649	-		GFF4906	0.89	-0.7
4,899,649	-		GFF4906	0.89	-0.7
4,899,649	-		GFF4906	0.89	-0.9
4,899,649	-		GFF4906	0.89	-1.0
4,899,661	+		GFF4906	0.90	+0.7
4,899,668	-				+0.2
4,899,668	-				-1.8
4,899,668	-				-2.1
4,899,669	-				+0.6
4,899,679	-				-0.6
4,899,686	+				-0.8
4,899,693	-				-1.2
4,899,712	-				+0.8
4,899,718	+				+0.3
4,899,718	+				-1.3
4,899,718	+				-0.8
4,899,718	+				-0.6
4,899,718	+				-1.0
4,899,726	-				-1.7
4,899,726	-				-0.0
4,899,726	-				+1.4
4,899,726	-				-0.1
4,899,726	-				+1.0
4,899,726	-				-0.3
4,899,726	-				+0.5
4,899,726	-				-0.2
4,899,728	+				-0.8
4,899,747	-				-0.7
4,899,747	-				-0.4
4,899,775	+				-0.4
4,899,775	+				-2.1
4,899,783	-				-0.4
4,899,807	-				-1.1
4,899,813	+				-1.2
4,899,816	-				-1.2
4,899,816	-				-1.7
4,899,821	-				+0.7
4,899,829	-				-0.5
4,899,833	+				-2.0
4,899,842	-				+0.4
4,899,850	+				-1.0
4,899,855	+				-2.0
4,899,855	+				-0.9
4,899,863	-				-1.5
4,899,863	-				-1.9
4,899,863	-				-1.1
4,899,918	-				-1.5
4,899,989	-				-0.1
4,900,052	-				+0.4
4,900,110	-				+0.2
4,900,127	-				+1.1
4,900,133	+				-2.0
4,900,133	+				-0.9
4,900,140	+				-0.8
4,900,140	+				-0.4
4,900,141	-				-1.3
4,900,141	-				-1.8
4,900,146	-				-1.3
4,900,148	-				-0.9
4,900,148	-				-0.6
4,900,153	-				+0.1
4,900,158	-				-0.9
4,900,158	-				-1.5
4,900,185	+				-1.9
4,900,193	-				-1.8
4,900,225	+				+0.0
4,900,225	+				-1.3
4,900,225	+				-1.8
4,900,225	+				+0.2
4,900,225	+				-2.3
4,900,233	-				-2.1
4,900,233	-				-2.1
4,900,233	-				+0.1
4,900,246	+		GFF4907	0.11	-0.8
4,900,246	+		GFF4907	0.11	-0.8
4,900,254	-		GFF4907	0.12	-0.3
4,900,254	-		GFF4907	0.12	-0.1
4,900,254	-		GFF4907	0.12	-2.2
4,900,264	-		GFF4907	0.13	+0.1
4,900,273	+		GFF4907	0.15	-1.6
4,900,281	+		GFF4907	0.15	-0.9
4,900,371	+		GFF4907	0.27	-1.0
4,900,398	-		GFF4907	0.30	-1.2
4,900,400	+		GFF4907	0.30	-0.7
4,900,400	+		GFF4907	0.30	-1.3
4,900,400	+		GFF4907	0.30	+0.1
4,900,400	+		GFF4907	0.30	-0.3
4,900,400	+		GFF4907	0.30	+0.5
4,900,400	+		GFF4907	0.30	-1.8
4,900,408	-		GFF4907	0.31	-1.8
4,900,408	-		GFF4907	0.31	-3.5
4,900,494	+		GFF4907	0.42	+0.1
4,900,495	+		GFF4907	0.42	-0.6
4,900,502	-		GFF4907	0.43	-1.0
4,900,514	+		GFF4907	0.44	-0.7
4,900,517	+		GFF4907	0.45	+0.2
4,900,517	+		GFF4907	0.45	-1.9
4,900,518	+		GFF4907	0.45	-1.6
4,900,522	-		GFF4907	0.45	-1.1
4,900,528	+		GFF4907	0.46	+0.2
4,900,528	+		GFF4907	0.46	-2.3
4,900,532	-		GFF4907	0.46	-1.9
4,900,533	+		GFF4907	0.46	-1.8
4,900,533	+		GFF4907	0.46	-1.2
4,900,536	-		GFF4907	0.47	-3.9
4,900,536	-		GFF4907	0.47	+0.0
4,900,536	-		GFF4907	0.47	-1.2
4,900,536	-		GFF4907	0.47	-1.1
4,900,536	-		GFF4907	0.47	-0.2
4,900,536	-		GFF4907	0.47	-1.1
4,900,536	-		GFF4907	0.47	-0.9
4,900,541	-		GFF4907	0.47	-1.6
4,900,546	-		GFF4907	0.48	-0.6
4,900,562	-		GFF4907	0.50	+0.8
4,900,579	-		GFF4907	0.52	+0.5
4,900,582	+		GFF4907	0.53	+0.1
4,900,606	+		GFF4907	0.55	-0.9
4,900,606	+		GFF4907	0.55	-2.1
4,900,614	-		GFF4907	0.56	-0.2
4,900,614	-		GFF4907	0.56	-2.3
4,900,619	+		GFF4907	0.57	-0.4
4,900,644	+		GFF4907	0.60	-2.0
4,900,644	+		GFF4907	0.60	-1.3
4,900,651	+		GFF4907	0.61	-0.7
4,900,652	-		GFF4907	0.61	-0.5
4,900,652	-		GFF4907	0.61	-0.6
4,900,652	-		GFF4907	0.61	-1.2
4,900,652	-		GFF4907	0.61	-1.3
4,900,667	+		GFF4907	0.63	-0.1
4,900,667	+		GFF4907	0.63	-1.0
4,900,667	+		GFF4907	0.63	-0.6
4,900,669	-		GFF4907	0.63	-1.3
4,900,675	-		GFF4907	0.64	-0.8
4,900,675	-		GFF4907	0.64	-2.6
4,900,675	-		GFF4907	0.64	-0.3
4,900,698	-		GFF4907	0.67	-0.8
4,900,698	-		GFF4907	0.67	-1.1
4,900,713	+		GFF4907	0.69	+0.9
4,900,713	+		GFF4907	0.69	-1.0
4,900,715	+		GFF4907	0.69	-1.6
4,900,715	+		GFF4907	0.69	-1.0
4,900,715	+		GFF4907	0.69	-0.6
4,900,715	+		GFF4907	0.69	+0.0
4,900,715	+		GFF4907	0.69	-1.1
4,900,715	+		GFF4907	0.69	+0.2
4,900,715	+		GFF4907	0.69	-0.8
4,900,721	-		GFF4907	0.70	+0.4
4,900,721	-		GFF4907	0.70	-0.9
4,900,723	-		GFF4907	0.70	-2.7
4,900,723	-		GFF4907	0.70	-1.1
4,900,723	-		GFF4907	0.70	-0.8
4,900,723	-		GFF4907	0.70	-0.3
4,900,723	-		GFF4907	0.70	+0.5
4,900,723	-		GFF4907	0.70	+0.8
4,900,723	-		GFF4907	0.70	-0.8
4,900,723	-		GFF4907	0.70	-0.4
4,900,723	-		GFF4907	0.70	+0.7
4,900,723	-		GFF4907	0.70	+0.6
4,900,723	-		GFF4907	0.70	+0.8
4,900,728	-		GFF4907	0.70	-0.9
4,900,730	+		GFF4907	0.71	-0.1
4,900,751	-		GFF4907	0.73	-1.0
4,900,794	+		GFF4907	0.79	-1.2
4,900,802	-		GFF4907	0.80	-1.3
4,900,818	-		GFF4907	0.82	-0.9
4,900,818	-		GFF4907	0.82	+0.0
4,900,821	+		GFF4907	0.82	-0.5
4,900,825	-		GFF4907	0.82	-1.0
4,900,825	-		GFF4907	0.82	-0.6
4,900,843	-		GFF4907	0.85	+0.6
4,900,844	-		GFF4907	0.85	-0.8
4,900,845	+		GFF4907	0.85	-2.8
4,900,845	+		GFF4907	0.85	-0.9
4,900,845	+		GFF4907	0.85	-1.0
4,900,845	+		GFF4907	0.85	-0.3
4,900,845	+		GFF4907	0.85	+0.6
4,900,845	+		GFF4907	0.85	-2.5
4,900,845	+		GFF4907	0.85	+0.0
4,900,845	+		GFF4907	0.85	-1.7
4,900,845	+		GFF4907	0.85	-0.1
4,900,845	+		GFF4907	0.85	-1.5
4,900,845	+		GFF4907	0.85	+1.2
4,900,845	+		GFF4907	0.85	-0.2
4,900,845	+		GFF4907	0.85	-1.2
4,900,845	+		GFF4907	0.85	+0.6
4,900,845	+		GFF4907	0.85	-1.1
4,900,845	+		GFF4907	0.85	-0.1
4,900,845	+		GFF4907	0.85	-0.2
4,900,845	+		GFF4907	0.85	-1.0
4,900,845	+		GFF4907	0.85	+0.2
4,900,845	+		GFF4907	0.85	+0.4
4,900,845	+		GFF4907	0.85	-1.6
4,900,845	+		GFF4907	0.85	+0.9
4,900,845	+		GFF4907	0.85	-1.6
4,900,845	+		GFF4907	0.85	+0.2
4,900,845	+		GFF4907	0.85	-0.6
4,900,848	-		GFF4907	0.85	-2.2
4,900,853	-		GFF4907	0.86	-1.0
4,900,853	-		GFF4907	0.86	-2.1
4,900,853	-		GFF4907	0.86	+0.1
4,900,853	-		GFF4907	0.86	-1.2
4,900,853	-		GFF4907	0.86	-0.3
4,900,853	-		GFF4907	0.86	-1.5
4,900,853	-		GFF4907	0.86	+0.4
4,900,853	-		GFF4907	0.86	-1.5
4,900,853	-		GFF4907	0.86	+0.7
4,900,853	-		GFF4907	0.86	-1.1
4,900,853	-		GFF4907	0.86	-1.6
4,900,853	-		GFF4907	0.86	+0.0
4,900,853	-		GFF4907	0.86	+0.1
4,900,853	-		GFF4907	0.86	-0.8
4,900,853	-		GFF4907	0.86	-0.4
4,900,853	-		GFF4907	0.86	-0.9
4,900,853	-		GFF4907	0.86	-1.0
4,900,853	-		GFF4907	0.86	+0.5
4,900,853	-		GFF4907	0.86	-1.1
4,900,853	-		GFF4907	0.86	-1.2
4,900,853	-		GFF4907	0.86	-0.3
4,900,853	-		GFF4907	0.86	-2.8
4,900,853	-		GFF4907	0.86	+0.7
4,900,853	-		GFF4907	0.86	+0.0
4,900,853	-		GFF4907	0.86	-0.5
4,900,853	-		GFF4907	0.86	-0.3
4,900,853	-		GFF4907	0.86	-0.6
4,900,853	-		GFF4907	0.86	-0.6
4,900,853	-		GFF4907	0.86	-0.0
4,900,854	-		GFF4907	0.86	-2.0
4,900,878	-		GFF4907	0.89	-0.3
4,900,911	-				-1.2
4,900,911	-				-1.0
4,900,916	-				-1.2
4,900,921	-				-1.5
4,900,927	-				-0.3
4,900,929	+				-1.9
4,900,929	+				-0.6
4,900,929	+				-0.9
4,900,929	+				-0.1
4,900,929	+				+0.4
4,900,929	+				-1.6
4,900,929	+				+0.7
4,900,929	+				+0.0
4,900,934	+				-1.0
4,900,934	+				+0.6
4,900,934	+				+1.0
4,900,934	+				-1.6
4,900,934	+				-1.4
4,900,937	-				-0.8
4,900,937	-				-0.5
4,900,937	-				-1.0
4,900,937	-				-0.6
4,900,937	-				-0.1
4,900,937	-				+1.7
4,900,937	-				-0.4
4,900,937	-				-1.6
4,900,937	-				-2.6
4,900,942	-				-0.8
4,900,942	-				-0.1
4,900,942	-				-0.1
4,900,942	-				-1.5
4,900,947	-				-1.3
4,900,959	-				-0.1
4,900,959	-				-1.6
4,901,032	-		GFF4908	0.16	-0.2
4,901,045	+		GFF4908	0.20	-1.5
4,901,045	-		GFF4908	0.20	+0.4
4,901,053	-		GFF4908	0.22	-1.9
4,901,055	-		GFF4908	0.22	-2.6
4,901,075	-		GFF4908	0.28	-0.9
4,901,095	-		GFF4908	0.33	-2.3
4,901,097	+		GFF4908	0.33	-1.1
4,901,105	-		GFF4908	0.35	-1.0
4,901,110	+		GFF4908	0.37	+0.6
4,901,110	+		GFF4908	0.37	+1.0
4,901,110	+		GFF4908	0.37	-0.8
4,901,110	+		GFF4908	0.37	+0.4
4,901,110	+		GFF4908	0.37	-1.2
4,901,110	+		GFF4908	0.37	-0.6
4,901,110	+		GFF4908	0.37	-0.8
4,901,118	-		GFF4908	0.39	-1.0
4,901,118	-		GFF4908	0.39	+0.1
4,901,118	-		GFF4908	0.39	-1.4
4,901,118	-		GFF4908	0.39	-0.8
4,901,118	-		GFF4908	0.39	-2.1
4,901,118	-		GFF4908	0.39	+0.0
4,901,118	-		GFF4908	0.39	-0.5
4,901,120	+		GFF4908	0.39	-1.2
4,901,120	+		GFF4908	0.39	-0.2
4,901,120	+		GFF4908	0.39	-1.8
4,901,120	+		GFF4908	0.39	+0.8
4,901,128	-		GFF4908	0.41	+0.5
4,901,128	-		GFF4908	0.41	+1.2
4,901,128	-		GFF4908	0.41	-0.4
4,901,130	+		GFF4908	0.42	-0.5
4,901,130	+		GFF4908	0.42	+0.0
4,901,130	+		GFF4908	0.42	+1.0
4,901,130	+		GFF4908	0.42	+0.5
4,901,130	+		GFF4908	0.42	-2.5
4,901,130	+		GFF4908	0.42	-0.9
4,901,130	+		GFF4908	0.42	-0.9
4,901,130	+		GFF4908	0.42	-1.5
4,901,130	+		GFF4908	0.42	+0.4
4,901,130	+		GFF4908	0.42	-1.1
4,901,132	+		GFF4908	0.42	+0.6
4,901,138	-		GFF4908	0.44	-0.9
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4,901,138	-		GFF4908	0.44	-1.9
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4,901,830	+				-2.4
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4,901,835	+				+1.1
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4,901,838	-				-1.2
4,901,838	-				-1.9
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4,901,843	-				-1.2
4,901,843	-				-2.1
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4,901,848	-				-1.2
4,901,853	+				+0.2
4,901,863	+				-0.6
4,901,909	+				-0.6
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4,901,920	-				-1.8
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4,901,922	+				+0.1
4,901,923	+				-0.9
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4,901,948	+				+0.1
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4,901,951	-				-1.0
4,901,958	+		GFF4910	0.11	-0.9
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