Strain Fitness in Sphingobium sp. HT1-2 around GFF4880

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,867,781	-		GFF4879	0.59	-0.4
4,867,781	-		GFF4879	0.59	+2.5
4,867,790	+		GFF4879	0.59	+0.0
4,867,798	+		GFF4879	0.60	-0.4
4,867,798	+		GFF4879	0.60	-0.5
4,867,798	-		GFF4879	0.60	-1.4
4,867,823	-		GFF4879	0.61	-1.5
4,867,831	+		GFF4879	0.62	-1.4
4,867,836	+		GFF4879	0.62	-1.9
4,867,836	+		GFF4879	0.62	+0.0
4,867,844	-		GFF4879	0.63	+1.1
4,867,844	-		GFF4879	0.63	+0.4
4,867,846	+		GFF4879	0.63	+0.1
4,867,860	+		GFF4879	0.64	+1.9
4,867,862	+		GFF4879	0.64	+0.1
4,867,868	-		GFF4879	0.64	+1.3
4,867,933	-		GFF4879	0.68	-0.8
4,867,936	-		GFF4879	0.68	+0.2
4,867,949	+		GFF4879	0.69	+0.8
4,867,963	+		GFF4879	0.70	-1.5
4,868,065	+		GFF4879	0.76	-2.0
4,868,065	+		GFF4879	0.76	-0.0
4,868,073	-		GFF4879	0.77	-1.2
4,868,093	-		GFF4879	0.78	-0.8
4,868,096	+		GFF4879	0.78	+0.1
4,868,096	+		GFF4879	0.78	-0.3
4,868,096	+		GFF4879	0.78	-0.4
4,868,104	-		GFF4879	0.79	-0.9
4,868,104	-		GFF4879	0.79	+0.7
4,868,106	+		GFF4879	0.79	-0.8
4,868,106	+		GFF4879	0.79	-2.1
4,868,114	-		GFF4879	0.79	+0.1
4,868,119	-		GFF4879	0.80	-1.0
4,868,124	-		GFF4879	0.80	+0.1
4,868,150	-		GFF4879	0.82	-0.7
4,868,179	+		GFF4879	0.83	-0.9
4,868,184	+		GFF4879	0.84	-0.2
4,868,249	-		GFF4879	0.88	-1.3
4,868,255	-		GFF4879	0.88	+0.8
4,868,265	+		GFF4879	0.89	-0.5
4,868,267	+		GFF4879	0.89	-0.3
4,868,282	-		GFF4879	0.90	-0.1
4,868,308	+				-0.4
4,868,308	+				+0.4
4,868,316	-				+2.5
4,868,334	+				-0.2
4,868,334	+				+0.3
4,868,342	-				-0.5
4,868,363	+				+0.5
4,868,363	+				+1.6
4,868,372	-				+0.3
4,868,429	+				-0.2
4,868,429	+				-0.3
4,868,429	+				-0.8
4,868,430	+				+0.1
4,868,430	+				-0.6
4,868,430	+				+0.6
4,868,454	-				-0.2
4,868,456	+				-1.4
4,868,456	+				+0.3
4,868,456	+				-0.4
4,868,456	+				+0.8
4,868,459	-				-0.8
4,868,464	-				+0.0
4,868,464	-				-0.0
4,868,464	-				-0.2
4,868,465	-				+1.3
4,868,466	+				-0.9
4,868,474	-				+0.5
4,868,474	-				-0.4
4,868,490	+				-1.7
4,868,510	-				+0.3
4,868,511	+				-1.5
4,868,519	-				+0.8
4,868,519	-				-0.9
4,868,519	-				+0.2
4,868,519	-				+0.4
4,868,521	+				-2.5
4,868,529	-				-0.9
4,868,535	+				-0.5
4,868,537	+				-0.7
4,868,547	+				-1.0
4,868,547	+				+0.1
4,868,547	+				+0.2
4,868,555	-				+1.9
4,868,588	+				+0.6
4,868,596	-				+0.1
4,868,611	-				-0.1
4,868,616	+				+0.5
4,868,624	-				+0.2
4,868,751	+				-0.6
4,868,759	+				+0.8
4,868,761	+				-0.4
4,868,767	-				+0.6
4,868,802	+				-1.5
4,868,802	+				+1.5
4,868,803	+				-0.7
4,868,803	+				-2.3
4,868,803	+				+0.2
4,868,803	+				-1.1
4,868,803	+				-0.1
4,868,803	+				-0.0
4,868,810	-				-0.3
4,868,810	-				-0.5
4,868,810	-				+0.9
4,868,810	-				-1.5
4,868,811	-				+0.3
4,868,811	-				-0.7
4,868,811	-				+0.4
4,868,811	-				+0.6
4,868,832	-				-0.5
4,868,844	+				+0.2
4,868,844	+				+1.2
4,868,844	+				+1.7
4,868,848	+		GFF4880	0.10	-0.4
4,868,848	+		GFF4880	0.10	-0.2
4,868,852	-		GFF4880	0.11	+0.2
4,868,853	-		GFF4880	0.11	+0.4
4,868,863	+		GFF4880	0.12	-0.2
4,868,863	+		GFF4880	0.12	-0.1
4,868,863	+		GFF4880	0.12	+1.3
4,868,863	+		GFF4880	0.12	-1.7
4,868,871	-		GFF4880	0.13	+0.3
4,868,871	-		GFF4880	0.13	+1.1
4,868,871	-		GFF4880	0.13	-0.2
4,868,871	-		GFF4880	0.13	-0.4
4,868,899	+		GFF4880	0.16	-1.1
4,868,906	+		GFF4880	0.17	-1.1
4,868,928	+		GFF4880	0.19	-0.5
4,868,961	-		GFF4880	0.23	+1.2
4,868,961	-		GFF4880	0.23	-1.6
4,868,961	-		GFF4880	0.23	-0.8
4,868,991	+		GFF4880	0.26	+0.8
4,868,991	+		GFF4880	0.26	+1.6
4,868,998	+		GFF4880	0.27	-1.1
4,869,035	+		GFF4880	0.31	+0.4
4,869,039	-		GFF4880	0.32	-0.4
4,869,041	+		GFF4880	0.32	-1.7
4,869,041	+		GFF4880	0.32	-0.0
4,869,042	+		GFF4880	0.32	+0.6
4,869,043	-		GFF4880	0.32	-0.9
4,869,051	+		GFF4880	0.33	+0.9
4,869,053	-		GFF4880	0.33	+0.1
4,869,058	-		GFF4880	0.34	+1.3
4,869,059	-		GFF4880	0.34	-0.3
4,869,066	-		GFF4880	0.35	+0.4
4,869,082	+		GFF4880	0.36	-0.8
4,869,100	-		GFF4880	0.38	-0.5
4,869,108	+		GFF4880	0.39	-0.4
4,869,126	+		GFF4880	0.41	-0.3
4,869,128	+		GFF4880	0.42	-1.7
4,869,128	+		GFF4880	0.42	-0.2
4,869,128	+		GFF4880	0.42	+1.1
4,869,136	-		GFF4880	0.43	+0.7
4,869,138	-		GFF4880	0.43	-0.5
4,869,159	+		GFF4880	0.45	-1.5
4,869,159	+		GFF4880	0.45	-1.0
4,869,206	+		GFF4880	0.50	+0.6
4,869,209	+		GFF4880	0.51	-0.7
4,869,209	+		GFF4880	0.51	-2.7
4,869,211	+		GFF4880	0.51	-1.7
4,869,217	-		GFF4880	0.52	-0.6
4,869,217	-		GFF4880	0.52	-1.8
4,869,217	-		GFF4880	0.52	+0.8
4,869,219	-		GFF4880	0.52	-0.8
4,869,219	-		GFF4880	0.52	-0.1
4,869,219	-		GFF4880	0.52	-2.2
4,869,219	-		GFF4880	0.52	+0.2
4,869,232	-		GFF4880	0.53	+0.8
4,869,237	+		GFF4880	0.54	-0.8
4,869,245	-		GFF4880	0.55	+0.4
4,869,269	-		GFF4880	0.57	-0.5
4,869,269	-		GFF4880	0.57	-0.2
4,869,281	+		GFF4880	0.59	-0.4
4,869,298	+		GFF4880	0.61	-0.4
4,869,338	-		GFF4880	0.65	+0.0
4,869,351	+		GFF4880	0.67	+0.9
4,869,358	+		GFF4880	0.67	+0.7
4,869,387	+		GFF4880	0.71	-0.9
4,869,387	+		GFF4880	0.71	+0.2
4,869,387	+		GFF4880	0.71	+0.3
4,869,387	+		GFF4880	0.71	-2.1
4,869,387	+		GFF4880	0.71	+0.3
4,869,387	+		GFF4880	0.71	+0.4
4,869,395	-		GFF4880	0.72	+1.3
4,869,395	-		GFF4880	0.72	+0.1
4,869,457	-		GFF4880	0.79	-0.7
4,869,471	-		GFF4880	0.80	-0.8
4,869,486	+		GFF4880	0.82	-0.6
4,869,486	+		GFF4880	0.82	-1.1
4,869,486	+		GFF4880	0.82	-2.0
4,869,486	+		GFF4880	0.82	+0.5
4,869,486	+		GFF4880	0.82	-1.0
4,869,486	+		GFF4880	0.82	-1.2
4,869,494	-		GFF4880	0.83	-0.9
4,869,494	-		GFF4880	0.83	-2.4
4,869,494	-		GFF4880	0.83	+1.9
4,869,494	-		GFF4880	0.83	-1.3
4,869,494	-		GFF4880	0.83	-2.0
4,869,494	-		GFF4880	0.83	+0.5
4,869,501	-		GFF4880	0.84	-0.7
4,869,501	-		GFF4880	0.84	-1.7
4,869,510	+		GFF4880	0.85	+0.2
4,869,570	-				-0.1
4,869,574	+				-2.1
4,869,574	+				+0.1
4,869,580	-				-1.1
4,869,602	-				-1.5
4,869,602	-				-1.9
4,869,679	-				-3.0
4,869,755	+				+0.0
4,869,755	+				-0.6
4,869,755	+				-0.0
4,869,755	+				-0.4
4,869,755	+				-1.2
4,869,755	+				-1.2
4,869,755	+				-1.2
4,869,755	+				+1.0
4,869,755	+				+0.6
4,869,755	+				+0.2
4,869,755	+				-2.1
4,869,755	+				+0.2
4,869,763	-				+0.4
4,869,763	-				+0.3
4,869,763	-				+0.1
4,869,763	-				-0.6
4,869,770	+				+0.3
4,869,770	+				+0.0
4,869,770	+				+0.4
4,869,778	-				-1.0
4,869,778	-				-0.5
4,869,780	+				-1.0
4,869,791	+				+0.8
4,869,799	-				+0.3
4,869,802	+				-1.2
4,869,810	-				-1.1
4,869,812	+				-0.7
4,869,812	+				-1.2
4,869,812	+				-1.4
4,869,812	+				+0.8
4,869,812	+				-0.5
4,869,820	-				-1.4
4,869,820	-				-0.4
4,869,823	+				-0.3
4,869,848	+		GFF4881	0.11	-0.4
4,869,849	-		GFF4881	0.11	-0.9
4,869,849	-		GFF4881	0.11	+0.8
4,869,854	-		GFF4881	0.11	+0.3
4,869,854	-		GFF4881	0.11	-0.1
4,869,856	-		GFF4881	0.11	-0.4
4,869,856	-		GFF4881	0.11	-0.6
4,869,856	-		GFF4881	0.11	-0.7
4,869,856	-		GFF4881	0.11	+0.6
4,869,861	-		GFF4881	0.12	-1.4
4,869,866	-		GFF4881	0.12	-0.4
4,869,937	+		GFF4881	0.18	-0.1
4,869,937	+		GFF4881	0.18	-0.1
4,869,959	-		GFF4881	0.20	-0.9
4,869,962	+		GFF4881	0.20	+1.1
4,869,969	+		GFF4881	0.21	+0.4
4,869,977	-		GFF4881	0.22	+0.2
4,869,982	-		GFF4881	0.22	+0.6
4,870,015	+		GFF4881	0.25	-0.4
4,870,024	+		GFF4881	0.26	-0.3
4,870,068	+		GFF4881	0.30	+1.9
4,870,085	+		GFF4881	0.31	-0.0
4,870,085	+		GFF4881	0.31	+0.1
4,870,085	+		GFF4881	0.31	+0.9
4,870,085	+		GFF4881	0.31	+0.3
4,870,090	+		GFF4881	0.31	-1.5
4,870,090	+		GFF4881	0.31	-1.9
4,870,093	-		GFF4881	0.32	-1.0
4,870,093	-		GFF4881	0.32	-0.2
4,870,093	-		GFF4881	0.32	-0.1
4,870,095	+		GFF4881	0.32	-0.7
4,870,095	+		GFF4881	0.32	-0.4
4,870,095	+		GFF4881	0.32	-1.4
4,870,095	+		GFF4881	0.32	+1.1
4,870,095	+		GFF4881	0.32	-0.5
4,870,095	+		GFF4881	0.32	+0.5
4,870,095	+		GFF4881	0.32	+1.5
4,870,095	+		GFF4881	0.32	+0.3
4,870,098	-		GFF4881	0.32	-0.5
4,870,103	-		GFF4881	0.33	-0.5
4,870,103	-		GFF4881	0.33	-0.8
4,870,106	+		GFF4881	0.33	-0.4
4,870,111	+		GFF4881	0.33	-0.2
4,870,111	+		GFF4881	0.33	+1.2
4,870,111	+		GFF4881	0.33	-1.4
4,870,111	+		GFF4881	0.33	-0.1
4,870,111	+		GFF4881	0.33	+0.1
4,870,116	+		GFF4881	0.34	+2.1
4,870,116	+		GFF4881	0.34	-0.6
4,870,116	+		GFF4881	0.34	+0.0
4,870,116	+		GFF4881	0.34	-0.7
4,870,116	+		GFF4881	0.34	+0.4
4,870,116	+		GFF4881	0.34	-0.1
4,870,119	-		GFF4881	0.34	-0.4
4,870,121	+		GFF4881	0.34	+0.5
4,870,124	-		GFF4881	0.34	-0.9
4,870,124	-		GFF4881	0.34	+1.1
4,870,124	-		GFF4881	0.34	-0.5
4,870,133	+		GFF4881	0.35	-1.4
4,870,136	-		GFF4881	0.35	-1.9
4,870,146	-		GFF4881	0.36	+1.2
4,870,151	-		GFF4881	0.37	-0.7
4,870,151	-		GFF4881	0.37	+0.4
4,870,151	-		GFF4881	0.37	-1.3
4,870,179	-		GFF4881	0.39	+1.3
4,870,184	-		GFF4881	0.40	+0.1
4,870,184	-		GFF4881	0.40	-0.3
4,870,255	+		GFF4881	0.46	-0.5
4,870,259	+		GFF4881	0.46	-0.2
4,870,263	-		GFF4881	0.46	-2.6
4,870,263	-		GFF4881	0.46	+0.5
4,870,274	+		GFF4881	0.47	-0.3
4,870,298	-		GFF4881	0.49	-0.5
4,870,339	+		GFF4881	0.53	+1.6
4,870,342	-		GFF4881	0.53	-0.3
4,870,345	-		GFF4881	0.53	-0.5
4,870,374	+		GFF4881	0.56	+1.8
4,870,394	+		GFF4881	0.57	-1.1
4,870,402	-		GFF4881	0.58	+0.2
4,870,421	-		GFF4881	0.60	-1.0
4,870,425	+		GFF4881	0.60	+1.2
4,870,425	+		GFF4881	0.60	-1.1
4,870,433	-		GFF4881	0.61	-0.5
4,870,456	+		GFF4881	0.63	+1.3
4,870,456	+		GFF4881	0.63	-1.0
4,870,464	-		GFF4881	0.63	-1.4
4,870,464	-		GFF4881	0.63	+0.2
4,870,464	-		GFF4881	0.63	-1.5
4,870,464	-		GFF4881	0.63	-0.4
4,870,495	+		GFF4881	0.66	+0.8
4,870,495	+		GFF4881	0.66	-0.8
4,870,495	+		GFF4881	0.66	+0.5
4,870,495	+		GFF4881	0.66	-0.4
4,870,503	-		GFF4881	0.67	-0.4
4,870,523	-		GFF4881	0.69	-0.9
4,870,523	-		GFF4881	0.69	+2.1
4,870,523	-		GFF4881	0.69	+0.0
4,870,523	-		GFF4881	0.69	+0.8
4,870,523	-		GFF4881	0.69	-1.5
4,870,523	-		GFF4881	0.69	-0.8
4,870,613	+		GFF4881	0.76	+0.1
4,870,615	+		GFF4881	0.76	-1.0
4,870,615	+		GFF4881	0.76	+0.7
4,870,615	+		GFF4881	0.76	+0.2
4,870,615	+		GFF4881	0.76	+0.9
4,870,621	-		GFF4881	0.77	+1.4
4,870,623	-		GFF4881	0.77	-0.3
4,870,627	-		GFF4881	0.77	-0.9
4,870,631	-		GFF4881	0.78	-2.0