Strain Fitness in Sphingobium sp. HT1-2 around GFF4878

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,864,236	+		GFF4876	0.90	-1.1
4,864,275	+				-1.1
4,864,293	+				+0.4
4,864,299	-				-2.3
4,864,301	-				-1.6
4,864,301	-				-1.1
4,864,304	+				-1.0
4,864,316	+				-1.1
4,864,316	+				-1.7
4,864,316	+				-0.9
4,864,316	+				+0.8
4,864,316	+				+1.0
4,864,316	+				-1.9
4,864,316	+				-1.9
4,864,316	+				+1.0
4,864,316	+				+0.3
4,864,316	+				+0.1
4,864,318	+				-0.2
4,864,318	+				-0.5
4,864,318	+				-0.6
4,864,324	-				-1.4
4,864,324	-				-1.5
4,864,324	-				+0.3
4,864,324	-				-1.2
4,864,324	-				-0.6
4,864,324	-				-1.1
4,864,324	-				-1.0
4,864,324	-				-1.6
4,864,326	-				+0.0
4,864,326	-				+0.6
4,864,337	+				+1.0
4,864,342	+				+0.5
4,864,342	+				-1.7
4,864,342	+				-0.1
4,864,343	+				+1.0
4,864,343	+				-1.4
4,864,345	-				-0.1
4,864,350	-				+1.0
4,864,350	-				-1.3
4,864,351	-				+0.3
4,864,351	-				-1.4
4,864,351	-				+0.1
4,864,389	+				-0.3
4,864,428	+				-2.1
4,864,429	+				-0.7
4,864,437	-				+0.8
4,864,441	+				-1.6
4,864,446	+				+0.8
4,864,454	-				+0.4
4,864,467	+				+0.8
4,864,468	-				+0.3
4,864,468	-				+1.0
4,864,468	-				+0.1
4,864,475	-				-1.4
4,864,476	+				-0.5
4,864,476	+				-0.7
4,864,476	+				-0.3
4,864,477	-				-2.0
4,864,497	+				+0.4
4,864,536	+		GFF4877	0.15	-0.1
4,864,536	+		GFF4877	0.15	-0.7
4,864,544	-		GFF4877	0.16	-1.1
4,864,544	-		GFF4877	0.16	-1.1
4,864,564	+		GFF4877	0.18	-1.7
4,864,572	-		GFF4877	0.19	-0.6
4,864,572	-		GFF4877	0.19	-1.3
4,864,573	-		GFF4877	0.19	-0.5
4,864,574	+		GFF4877	0.19	+0.3
4,864,596	+		GFF4877	0.22	-0.7
4,864,615	+		GFF4877	0.24	+0.4
4,864,626	-		GFF4877	0.26	+0.4
4,864,626	-		GFF4877	0.26	-0.7
4,864,639	-		GFF4877	0.27	+1.8
4,864,644	-		GFF4877	0.28	-0.7
4,864,650	-		GFF4877	0.29	-1.3
4,864,659	-		GFF4877	0.30	-0.7
4,864,670	+		GFF4877	0.31	-1.6
4,864,670	+		GFF4877	0.31	-1.5
4,864,670	+		GFF4877	0.31	+0.7
4,864,671	+		GFF4877	0.31	-0.7
4,864,671	+		GFF4877	0.31	+0.1
4,864,678	-		GFF4877	0.32	-1.3
4,864,678	-		GFF4877	0.32	-0.5
4,864,678	-		GFF4877	0.32	+1.1
4,864,679	-		GFF4877	0.32	-0.7
4,864,683	+		GFF4877	0.33	-0.6
4,864,683	+		GFF4877	0.33	-1.2
4,864,683	+		GFF4877	0.33	-1.2
4,864,683	+		GFF4877	0.33	-1.5
4,864,683	+		GFF4877	0.33	-1.1
4,864,683	+		GFF4877	0.33	-2.8
4,864,686	-		GFF4877	0.33	+0.3
4,864,691	-		GFF4877	0.34	+0.5
4,864,691	-		GFF4877	0.34	+0.0
4,864,691	-		GFF4877	0.34	+0.1
4,864,691	-		GFF4877	0.34	-0.1
4,864,693	+		GFF4877	0.34	+0.0
4,864,693	+		GFF4877	0.34	-1.9
4,864,696	-		GFF4877	0.34	-0.4
4,864,696	-		GFF4877	0.34	+0.4
4,864,702	-		GFF4877	0.35	+1.3
4,864,715	+		GFF4877	0.37	-1.5
4,864,715	+		GFF4877	0.37	-1.8
4,864,715	+		GFF4877	0.37	-0.8
4,864,715	+		GFF4877	0.37	+0.1
4,864,715	+		GFF4877	0.37	-1.4
4,864,723	-		GFF4877	0.38	+0.0
4,864,723	-		GFF4877	0.38	+0.8
4,864,723	-		GFF4877	0.38	+0.3
4,864,723	-		GFF4877	0.38	+0.0
4,864,723	-		GFF4877	0.38	-0.2
4,864,723	-		GFF4877	0.38	-0.5
4,864,723	-		GFF4877	0.38	+0.3
4,864,723	-		GFF4877	0.38	-1.5
4,864,723	-		GFF4877	0.38	+0.4
4,864,723	-		GFF4877	0.38	-1.6
4,864,723	-		GFF4877	0.38	-1.6
4,864,723	-		GFF4877	0.38	+0.6
4,864,723	-		GFF4877	0.38	-1.1
4,864,738	+		GFF4877	0.40	-1.3
4,864,738	+		GFF4877	0.40	-0.7
4,864,738	+		GFF4877	0.40	-0.9
4,864,746	-		GFF4877	0.41	-0.7
4,864,746	-		GFF4877	0.41	-1.1
4,864,761	-		GFF4877	0.43	-0.4
4,864,779	+		GFF4877	0.45	+0.3
4,864,783	+		GFF4877	0.45	-2.0
4,864,795	+		GFF4877	0.47	-0.3
4,864,795	+		GFF4877	0.47	-1.5
4,864,803	-		GFF4877	0.48	-0.2
4,864,803	-		GFF4877	0.48	+0.3
4,864,803	-		GFF4877	0.48	-1.3
4,864,803	-		GFF4877	0.48	-0.6
4,864,803	-		GFF4877	0.48	-0.0
4,864,840	-		GFF4877	0.52	-2.0
4,864,851	+		GFF4877	0.54	+0.1
4,864,851	+		GFF4877	0.54	-0.4
4,864,851	+		GFF4877	0.54	-1.0
4,864,851	+		GFF4877	0.54	-0.6
4,864,851	+		GFF4877	0.54	-0.7
4,864,851	+		GFF4877	0.54	-0.1
4,864,851	+		GFF4877	0.54	+0.0
4,864,859	-		GFF4877	0.55	+0.1
4,864,859	-		GFF4877	0.55	-2.2
4,864,859	-		GFF4877	0.55	-1.6
4,864,859	-		GFF4877	0.55	-0.5
4,864,859	-		GFF4877	0.55	-1.3
4,864,859	-		GFF4877	0.55	-1.0
4,864,859	-		GFF4877	0.55	-0.5
4,864,859	-		GFF4877	0.55	+0.3
4,864,865	-		GFF4877	0.55	+0.5
4,864,865	-		GFF4877	0.55	+0.4
4,864,882	+		GFF4877	0.58	-1.5
4,864,884	+		GFF4877	0.58	-1.3
4,864,884	+		GFF4877	0.58	-0.6
4,864,884	+		GFF4877	0.58	-1.5
4,864,884	+		GFF4877	0.58	+1.8
4,864,890	-		GFF4877	0.59	-0.6
4,864,892	-		GFF4877	0.59	-1.1
4,864,914	+		GFF4877	0.62	+1.3
4,864,915	+		GFF4877	0.62	+0.1
4,864,915	+		GFF4877	0.62	-0.6
4,864,915	+		GFF4877	0.62	-0.4
4,864,922	-		GFF4877	0.63	+0.3
4,864,922	-		GFF4877	0.63	-0.3
4,864,923	-		GFF4877	0.63	-1.1
4,864,927	+		GFF4877	0.63	+1.0
4,864,927	+		GFF4877	0.63	-0.8
4,864,927	+		GFF4877	0.63	-0.8
4,864,927	+		GFF4877	0.63	-0.7
4,864,927	+		GFF4877	0.63	+0.0
4,864,927	+		GFF4877	0.63	+0.3
4,864,929	+		GFF4877	0.63	-1.0
4,864,935	-		GFF4877	0.64	-0.3
4,864,935	-		GFF4877	0.64	-0.1
4,864,935	-		GFF4877	0.64	+0.8
4,864,935	-		GFF4877	0.64	+0.1
4,864,935	-		GFF4877	0.64	+0.2
4,864,935	-		GFF4877	0.64	-1.4
4,864,937	-		GFF4877	0.64	+0.1
4,864,947	+		GFF4877	0.66	-0.3
4,864,987	+		GFF4877	0.71	-0.9
4,864,989	-		GFF4877	0.71	+0.6
4,864,995	-		GFF4877	0.72	-0.7
4,865,005	-		GFF4877	0.73	+0.8
4,865,020	-		GFF4877	0.75	-1.3
4,865,028	+		GFF4877	0.76	-0.9
4,865,049	-		GFF4877	0.78	-0.2
4,865,049	-		GFF4877	0.78	-0.5
4,865,054	-		GFF4877	0.79	-1.2
4,865,059	-		GFF4877	0.80	-0.3
4,865,059	-		GFF4877	0.80	-0.9
4,865,064	+		GFF4877	0.80	-0.9
4,865,077	+		GFF4877	0.82	-0.4
4,865,077	+		GFF4877	0.82	-3.0
4,865,077	+		GFF4877	0.82	+0.8
4,865,083	-		GFF4877	0.83	-0.4
4,865,085	-		GFF4877	0.83	+1.1
4,865,085	-		GFF4877	0.83	-1.4
4,865,114	+		GFF4877	0.86	-0.9
4,865,117	-		GFF4877	0.87	-0.7
4,865,119	+		GFF4877	0.87	-1.2
4,865,151	+				+0.2
4,865,155	-				-1.9
4,865,158	+				-1.3
4,865,158	+				+1.0
4,865,176	-				+0.5
4,865,188	+				-1.1
4,865,191	-				-1.1
4,865,195	+				-0.5
4,865,195	+				-0.8
4,865,195	+				+0.4
4,865,195	+				+0.0
4,865,195	+				+1.0
4,865,195	+				+1.1
4,865,195	+				-0.2
4,865,195	+				-0.2
4,865,197	+				-1.3
4,865,197	+				+0.6
4,865,197	+				-0.6
4,865,203	-				+0.0
4,865,203	-				+0.5
4,865,203	-				+0.8
4,865,203	-				+0.8
4,865,205	-				+0.0
4,865,217	+				-1.5
4,865,225	-				+1.5
4,865,226	-				+0.6
4,865,243	+				-1.4
4,865,243	+				-0.9
4,865,251	-				-0.3
4,865,272	+				+0.1
4,865,272	+				-0.9
4,865,272	+				-0.6
4,865,272	+				+0.4
4,865,272	+				+1.3
4,865,272	+				-0.6
4,865,280	-				-0.6
4,865,337	+				+0.2
4,865,337	+				-1.3
4,865,337	+				-0.3
4,865,337	+				-0.2
4,865,337	+				+0.3
4,865,337	+				-0.9
4,865,337	+				-0.6
4,865,337	+				-1.0
4,865,342	+				-1.3
4,865,345	-				-1.0
4,865,345	-				-1.6
4,865,345	-				+0.1
4,865,345	-				-0.2
4,865,352	+				-0.6
4,865,352	+				+0.3
4,865,354	+				-0.8
4,865,354	+				-0.2
4,865,360	-				+0.3
4,865,360	-				-0.1
4,865,360	-				-0.3
4,865,362	-				-0.3
4,865,371	-				-0.3
4,865,371	-				+0.4
4,865,386	-		GFF4878	0.10	-0.1
4,865,386	-		GFF4878	0.10	-0.7
4,865,394	-		GFF4878	0.11	-1.3
4,865,407	-		GFF4878	0.12	+1.4
4,865,420	+		GFF4878	0.12	-1.9
4,865,424	-		GFF4878	0.13	-1.1
4,865,424	-		GFF4878	0.13	+0.6
4,865,425	+		GFF4878	0.13	-1.0
4,865,425	+		GFF4878	0.13	-1.0
4,865,425	+		GFF4878	0.13	-0.9
4,865,426	+		GFF4878	0.13	-1.2
4,865,429	-		GFF4878	0.13	+0.9
4,865,433	-		GFF4878	0.13	+1.1
4,865,433	-		GFF4878	0.13	-0.6
4,865,433	-		GFF4878	0.13	-0.3
4,865,446	+		GFF4878	0.14	+1.0
4,865,448	+		GFF4878	0.14	+0.9
4,865,451	+		GFF4878	0.14	-0.0
4,865,451	+		GFF4878	0.14	-0.7
4,865,454	-		GFF4878	0.15	-0.5
4,865,454	-		GFF4878	0.15	-0.2
4,865,456	+		GFF4878	0.15	-0.3
4,865,456	+		GFF4878	0.15	-1.0
4,865,456	+		GFF4878	0.15	-1.7
4,865,459	-		GFF4878	0.15	-2.7
4,865,459	-		GFF4878	0.15	-0.6
4,865,464	-		GFF4878	0.15	+0.1
4,865,464	-		GFF4878	0.15	-1.8
4,865,464	-		GFF4878	0.15	-1.2
4,865,471	+		GFF4878	0.16	+0.5
4,865,472	+		GFF4878	0.16	-1.8
4,865,479	-		GFF4878	0.16	-0.8
4,865,479	-		GFF4878	0.16	+0.2
4,865,479	-		GFF4878	0.16	-1.7
4,865,479	-		GFF4878	0.16	-1.6
4,865,480	-		GFF4878	0.16	-0.8
4,865,491	+		GFF4878	0.17	+0.7
4,865,499	-		GFF4878	0.17	-0.2
4,865,506	-		GFF4878	0.18	-0.6
4,865,534	+		GFF4878	0.20	-1.6
4,865,542	-		GFF4878	0.20	-1.4
4,865,545	+		GFF4878	0.20	-0.9
4,865,545	+		GFF4878	0.20	-0.7
4,865,545	+		GFF4878	0.20	-0.1
4,865,545	+		GFF4878	0.20	-0.1
4,865,545	+		GFF4878	0.20	-1.0
4,865,545	+		GFF4878	0.20	-2.3
4,865,545	+		GFF4878	0.20	-0.6
4,865,545	+		GFF4878	0.20	-0.6
4,865,545	+		GFF4878	0.20	-2.0
4,865,545	+		GFF4878	0.20	-0.3
4,865,545	+		GFF4878	0.20	-0.6
4,865,553	-		GFF4878	0.21	+0.3
4,865,553	-		GFF4878	0.21	-0.6
4,865,553	-		GFF4878	0.21	-2.5
4,865,553	-		GFF4878	0.21	-1.0
4,865,553	-		GFF4878	0.21	-1.0
4,865,553	-		GFF4878	0.21	-1.1
4,865,553	-		GFF4878	0.21	+0.0
4,865,553	-		GFF4878	0.21	-1.5
4,865,553	-		GFF4878	0.21	-0.3
4,865,553	-		GFF4878	0.21	-0.9
4,865,553	-		GFF4878	0.21	-2.7
4,865,558	+		GFF4878	0.21	+0.0
4,865,575	+		GFF4878	0.22	-0.9
4,865,580	+		GFF4878	0.22	+0.4
4,865,581	-		GFF4878	0.22	-1.7
4,865,581	-		GFF4878	0.22	-2.6
4,865,588	-		GFF4878	0.23	+0.5
4,865,588	-		GFF4878	0.23	-0.4
4,865,595	-		GFF4878	0.23	-0.6
4,865,597	+		GFF4878	0.23	-1.2
4,865,597	+		GFF4878	0.23	-1.6
4,865,605	-		GFF4878	0.24	-0.1
4,865,620	-		GFF4878	0.25	-0.5
4,865,633	-		GFF4878	0.26	+0.8
4,865,637	+		GFF4878	0.26	+0.1
4,865,637	+		GFF4878	0.26	-0.2
4,865,637	+		GFF4878	0.26	-1.6
4,865,645	-		GFF4878	0.26	-0.9
4,865,645	-		GFF4878	0.26	+0.4
4,865,645	-		GFF4878	0.26	-0.7
4,865,645	-		GFF4878	0.26	-1.1
4,865,645	-		GFF4878	0.26	+0.3
4,865,647	+		GFF4878	0.27	-1.1
4,865,647	+		GFF4878	0.27	-0.6
4,865,647	+		GFF4878	0.27	-0.3
4,865,650	-		GFF4878	0.27	-1.6
4,865,650	-		GFF4878	0.27	+0.4
4,865,655	-		GFF4878	0.27	-0.5
4,865,655	-		GFF4878	0.27	-0.6
4,865,655	-		GFF4878	0.27	+0.3
4,865,655	-		GFF4878	0.27	-0.7
4,865,655	-		GFF4878	0.27	+0.5
4,865,664	+		GFF4878	0.28	-1.0
4,865,665	-		GFF4878	0.28	-2.3
4,865,683	+		GFF4878	0.29	+0.3
4,865,695	+		GFF4878	0.30	-0.6
4,865,704	+		GFF4878	0.30	-2.0
4,865,714	-		GFF4878	0.31	-0.1
4,865,725	+		GFF4878	0.31	-0.3
4,865,741	-		GFF4878	0.32	-0.7
4,865,742	+		GFF4878	0.32	-0.5
4,865,742	+		GFF4878	0.32	-1.3
4,865,742	+		GFF4878	0.32	+0.4
4,865,742	+		GFF4878	0.32	-0.1
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4,866,681	+				+0.1
4,866,690	+				-0.3
4,866,711	+				-1.9
4,866,714	-				+0.4
4,866,715	-				+0.3
4,866,724	+				-1.3
4,866,771	+				-1.3
4,866,771	+				-0.7
4,866,779	-				-0.3
4,866,807	+				-2.2
4,866,812	+				+0.1
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4,866,821	-				-1.0
4,866,833	-				+0.8
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4,866,846	+				-1.0
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4,866,854	-				-0.6
4,866,854	-				-2.0
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4,866,880	-				+0.1
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