Strain Fitness in Sphingobium sp. HT1-2 around GFF4839

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,824,017	+				-0.7
4,824,017	+				-1.1
4,824,025	-				+0.7
4,824,057	+				+0.4
4,824,067	+				+0.2
4,824,067	+				-0.3
4,824,070	-				-0.9
4,824,087	-				-0.3
4,824,097	+				-2.5
4,824,123	-				-0.3
4,824,153	+				+1.1
4,824,193	+				-0.9
4,824,201	+				-0.6
4,824,201	-				-0.9
4,824,215	+				-0.7
4,824,221	-				+0.1
4,824,268	+				-1.9
4,824,268	+				-0.1
4,824,268	+				-1.3
4,824,273	+				-1.7
4,824,273	+				-1.7
4,824,276	-				-1.0
4,824,281	-				-0.2
4,824,292	-				-1.1
4,824,292	-				-0.3
4,824,299	-				+1.5
4,824,307	-				-2.1
4,824,337	-				-2.2
4,824,351	+				+0.8
4,824,359	-				-0.6
4,824,359	-				-0.9
4,824,359	-				-0.9
4,824,361	-				-0.2
4,824,371	+				-1.1
4,824,371	+				-1.4
4,824,371	+				+1.3
4,824,371	+				+0.7
4,824,374	-				+0.8
4,824,375	-				+0.4
4,824,379	-				+0.4
4,824,386	-				-1.5
4,824,388	+				-1.7
4,824,396	-				+0.0
4,824,414	+				-1.0
4,824,422	-				+0.7
4,824,428	+				-0.9
4,824,436	-				-0.6
4,824,446	-				-0.0
4,824,511	+		GFF4838	0.17	+0.4
4,824,511	+		GFF4838	0.17	-0.6
4,824,540	-		GFF4838	0.22	+0.5
4,824,541	+		GFF4838	0.22	+0.4
4,824,545	+		GFF4838	0.23	+0.3
4,824,545	+		GFF4838	0.23	+0.6
4,824,553	-		GFF4838	0.24	-1.7
4,824,553	-		GFF4838	0.24	+0.1
4,824,553	-		GFF4838	0.24	+0.3
4,824,553	-		GFF4838	0.24	+0.2
4,824,588	+		GFF4838	0.30	-0.2
4,824,596	-		GFF4838	0.32	-1.5
4,824,616	-		GFF4838	0.35	-0.9
4,824,616	-		GFF4838	0.35	+0.6
4,824,636	+		GFF4838	0.39	+0.0
4,824,643	+		GFF4838	0.40	-0.7
4,824,643	-		GFF4838	0.40	-1.6
4,824,643	-		GFF4838	0.40	-0.0
4,824,653	-		GFF4838	0.42	-1.0
4,824,674	-		GFF4838	0.45	+1.1
4,824,674	-		GFF4838	0.45	-0.2
4,824,700	-		GFF4838	0.50	-2.0
4,824,744	+		GFF4838	0.58	+1.7
4,824,762	-		GFF4838	0.61	-2.1
4,824,762	-		GFF4838	0.61	-0.9
4,824,763	+		GFF4838	0.61	-1.6
4,824,777	+		GFF4838	0.63	-1.1
4,824,833	+		GFF4838	0.73	-1.7
4,824,833	+		GFF4838	0.73	-1.6
4,824,841	-		GFF4838	0.75	-0.9
4,824,843	+		GFF4838	0.75	-0.6
4,824,851	-		GFF4838	0.76	+0.4
4,824,851	-		GFF4838	0.76	-0.9
4,824,851	-		GFF4838	0.76	+0.4
4,824,851	-		GFF4838	0.76	+0.5
4,824,859	+		GFF4838	0.78	-0.1
4,824,859	+		GFF4838	0.78	+0.3
4,824,859	+		GFF4838	0.78	+0.5
4,824,859	+		GFF4838	0.78	-0.4
4,824,867	-		GFF4838	0.79	+0.7
4,824,867	-		GFF4838	0.79	+1.0
4,824,867	-		GFF4838	0.79	+0.7
4,824,867	-		GFF4838	0.79	-0.1
4,824,867	-		GFF4838	0.79	+0.9
4,824,867	-		GFF4838	0.79	-0.0
4,824,867	-		GFF4838	0.79	-0.1
4,824,889	-		GFF4838	0.83	+0.9
4,824,901	-		GFF4838	0.85	+0.4
4,824,906	+		GFF4838	0.86	+0.4
4,824,936	+				+0.1
4,824,973	-				-1.1
4,825,009	+				+1.4
4,825,013	+				-0.1
4,825,017	-				+1.8
4,825,021	-				-0.6
4,825,023	-				-2.1
4,825,028	+				-2.1
4,825,039	+				+0.2
4,825,039	+				-1.1
4,825,047	-				-1.2
4,825,048	+				+0.3
4,825,062	-				-0.0
4,825,064	+				-1.0
4,825,084	+				+0.4
4,825,102	-				-0.9
4,825,127	-				+0.3
4,825,127	-				-1.3
4,825,129	+				+0.8
4,825,129	+				+0.0
4,825,129	+				+0.0
4,825,129	+				+0.4
4,825,129	+				+1.3
4,825,137	-		GFF4839	0.11	-0.3
4,825,137	-		GFF4839	0.11	-1.4
4,825,140	+		GFF4839	0.11	-1.3
4,825,148	-		GFF4839	0.11	+0.0
4,825,178	+		GFF4839	0.14	+1.6
4,825,178	+		GFF4839	0.14	+0.3
4,825,178	+		GFF4839	0.14	+0.3
4,825,178	+		GFF4839	0.14	-0.3
4,825,183	+		GFF4839	0.15	+0.1
4,825,183	+		GFF4839	0.15	-2.5
4,825,184	-		GFF4839	0.15	-0.7
4,825,186	-		GFF4839	0.15	+0.6
4,825,191	-		GFF4839	0.15	-0.2
4,825,191	-		GFF4839	0.15	+0.3
4,825,193	+		GFF4839	0.15	+1.7
4,825,196	-		GFF4839	0.16	-1.6
4,825,196	-		GFF4839	0.16	-0.6
4,825,196	-		GFF4839	0.16	+0.5
4,825,196	-		GFF4839	0.16	-0.6
4,825,196	-		GFF4839	0.16	+0.4
4,825,206	+		GFF4839	0.17	-1.9
4,825,236	+		GFF4839	0.19	+0.1
4,825,257	+		GFF4839	0.21	-1.1
4,825,263	-		GFF4839	0.22	-1.7
4,825,353	-		GFF4839	0.29	-0.4
4,825,390	+		GFF4839	0.33	+0.4
4,825,426	+		GFF4839	0.36	+0.1
4,825,479	-		GFF4839	0.41	+0.0
4,825,483	-		GFF4839	0.41	+0.3
4,825,485	+		GFF4839	0.41	+0.5
4,825,485	+		GFF4839	0.41	+0.3
4,825,490	+		GFF4839	0.41	-0.9
4,825,498	-		GFF4839	0.42	-0.7
4,825,498	-		GFF4839	0.42	-0.3
4,825,504	+		GFF4839	0.43	-1.0
4,825,504	+		GFF4839	0.43	-1.9
4,825,512	-		GFF4839	0.43	+0.3
4,825,512	-		GFF4839	0.43	+0.6
4,825,522	-		GFF4839	0.44	+0.4
4,825,541	-		GFF4839	0.46	-0.2
4,825,548	+		GFF4839	0.47	+0.7
4,825,548	+		GFF4839	0.47	+0.3
4,825,548	+		GFF4839	0.47	-0.4
4,825,556	-		GFF4839	0.47	+0.7
4,825,561	+		GFF4839	0.48	-0.9
4,825,566	+		GFF4839	0.48	-1.7
4,825,566	+		GFF4839	0.48	-0.5
4,825,566	+		GFF4839	0.48	-0.6
4,825,568	+		GFF4839	0.48	-0.7
4,825,574	-		GFF4839	0.49	+1.3
4,825,604	-		GFF4839	0.51	-0.2
4,825,606	+		GFF4839	0.52	-0.2
4,825,623	+		GFF4839	0.53	-1.5
4,825,623	+		GFF4839	0.53	-0.4
4,825,631	-		GFF4839	0.54	+0.2
4,825,647	-		GFF4839	0.55	-0.6
4,825,649	+		GFF4839	0.55	+0.2
4,825,649	+		GFF4839	0.55	+0.5
4,825,649	+		GFF4839	0.55	-0.7
4,825,657	-		GFF4839	0.56	-2.1
4,825,667	-		GFF4839	0.57	+0.0
4,825,667	-		GFF4839	0.57	-1.7
4,825,686	+		GFF4839	0.59	+1.0
4,825,686	-		GFF4839	0.59	-0.6
4,825,688	+		GFF4839	0.59	-1.3
4,825,691	+		GFF4839	0.59	+1.0
4,825,694	-		GFF4839	0.59	-1.4
4,825,694	-		GFF4839	0.59	-1.0
4,825,738	+		GFF4839	0.63	-1.8
4,825,738	-		GFF4839	0.63	+0.4
4,825,740	+		GFF4839	0.63	-0.1
4,825,740	+		GFF4839	0.63	+0.3
4,825,748	-		GFF4839	0.64	-1.5
4,825,748	-		GFF4839	0.64	+1.6
4,825,754	-		GFF4839	0.65	-0.5
4,825,772	-		GFF4839	0.66	-1.3
4,825,788	+		GFF4839	0.68	-1.1
4,825,797	+		GFF4839	0.68	+0.8
4,825,797	+		GFF4839	0.68	-0.9
4,825,805	-		GFF4839	0.69	-0.0
4,825,809	+		GFF4839	0.69	-1.0
4,825,809	+		GFF4839	0.69	-1.5
4,825,809	+		GFF4839	0.69	-0.2
4,825,809	+		GFF4839	0.69	+0.3
4,825,809	+		GFF4839	0.69	-0.1
4,825,809	+		GFF4839	0.69	-1.2
4,825,809	+		GFF4839	0.69	-1.6
4,825,817	-		GFF4839	0.70	+0.0
4,825,817	-		GFF4839	0.70	-0.7
4,825,817	-		GFF4839	0.70	-1.7
4,825,817	-		GFF4839	0.70	-0.1
4,825,817	-		GFF4839	0.70	+0.4
4,825,817	-		GFF4839	0.70	+1.1
4,825,817	-		GFF4839	0.70	-1.1
4,825,817	-		GFF4839	0.70	+0.3
4,825,817	-		GFF4839	0.70	-0.5
4,825,817	-		GFF4839	0.70	-0.9
4,825,828	+		GFF4839	0.71	-1.1
4,825,836	-		GFF4839	0.72	+0.4
4,825,836	-		GFF4839	0.72	-0.3
4,825,836	-		GFF4839	0.72	-1.5
4,825,836	-		GFF4839	0.72	+0.7
4,825,855	-		GFF4839	0.74	-1.0
4,825,856	+		GFF4839	0.74	-1.2
4,825,864	-		GFF4839	0.74	-0.5
4,825,897	+		GFF4839	0.77	+0.3
4,825,905	-		GFF4839	0.78	-1.6
4,825,946	-		GFF4839	0.81	+0.3
4,825,984	+		GFF4839	0.85	-0.6
4,825,990	+		GFF4839	0.85	+1.1
4,825,998	-		GFF4839	0.86	-2.1
4,826,000	+		GFF4839	0.86	-1.2
4,826,000	+		GFF4839	0.86	-0.9
4,826,000	+		GFF4839	0.86	+0.5
4,826,010	+		GFF4839	0.87	+0.4
4,826,018	+		GFF4839	0.88	-0.6
4,826,018	-		GFF4839	0.88	-0.3
4,826,052	-				+0.7
4,826,061	-				-1.6
4,826,144	-				-0.6
4,826,147	-				+0.2
4,826,186	-				+1.3
4,826,186	-				+0.3
4,826,212	-				-1.1
4,826,219	-				-0.3
4,826,230	+				+1.0
4,826,238	+				-1.1
4,826,238	-				+0.3
4,826,245	-				+0.1
4,826,247	+				-0.2
4,826,247	+				+0.4
4,826,280	-				-0.4
4,826,283	+				-0.6
4,826,291	+				-0.6
4,826,291	+				-0.6
4,826,291	+				+2.2
4,826,291	+				-0.2
4,826,299	-				-0.6
4,826,299	-				-0.6
4,826,299	-				+0.8
4,826,299	-				-1.6
4,826,347	+				+1.3
4,826,347	+				-2.2
4,826,355	-				-1.8
4,826,355	-				+0.8
4,826,355	-				+0.6
4,826,365	-				+0.3
4,826,421	-				-0.7
4,826,438	+				-0.7
4,826,441	-				+0.7
4,826,446	+				-0.1
4,826,446	+				+0.6
4,826,446	+				-0.9
4,826,446	+				-2.8
4,826,453	+				+0.2
4,826,453	+				+0.3
4,826,454	-				-0.0
4,826,454	-				-0.4
4,826,454	-				-2.4
4,826,454	-				-2.2
4,826,454	-				+0.5
4,826,454	-				-0.7
4,826,470	+				+0.0
4,826,470	+				+1.4
4,826,483	+				+0.8
4,826,491	-				-0.5
4,826,503	-		GFF4840	0.12	+0.4
4,826,503	-		GFF4840	0.12	+1.4
4,826,503	-		GFF4840	0.12	+0.1
4,826,508	+		GFF4840	0.13	-0.0
4,826,565	+		GFF4840	0.27	-1.6
4,826,573	-		GFF4840	0.29	-0.5
4,826,581	+		GFF4840	0.31	+0.5
4,826,583	-		GFF4840	0.31	-0.1
4,826,589	-		GFF4840	0.33	-0.4
4,826,615	+		GFF4840	0.39	+0.8
4,826,622	+		GFF4840	0.41	+0.1
4,826,635	-		GFF4840	0.44	-0.6
4,826,667	-		GFF4840	0.52	+0.5
4,826,684	+		GFF4840	0.56	-1.0
4,826,684	+		GFF4840	0.56	-2.1
4,826,684	+		GFF4840	0.56	-1.0
4,826,684	+		GFF4840	0.56	-1.4
4,826,692	-		GFF4840	0.58	+0.4
4,826,692	-		GFF4840	0.58	-1.5
4,826,692	-		GFF4840	0.58	+0.2
4,826,729	+		GFF4840	0.67	-1.6
4,826,729	+		GFF4840	0.67	-0.7
4,826,737	-		GFF4840	0.69	-0.2
4,826,737	-		GFF4840	0.69	-0.9
4,826,748	+		GFF4840	0.71	+0.5
4,826,752	-		GFF4840	0.72	+0.3
4,826,754	-		GFF4840	0.73	+0.5
4,826,754	-		GFF4840	0.73	-0.6
4,826,777	+		GFF4840	0.78	-0.6
4,826,801	+		GFF4840	0.84	-0.5
4,826,836	-				-0.7
4,826,848	+				+0.7
4,826,848	+				-1.1
4,826,848	+				+0.2
4,826,849	-				+0.8
4,826,850	+				-1.6
4,826,850	+				+0.1
4,826,856	-				-0.2
4,826,867	+				-1.7
4,826,874	+				-0.0
4,826,875	-				-1.9
4,826,880	-				-1.2
4,826,888	+				-0.2
4,826,923	-				+0.2
4,826,931	-				+0.5
4,826,937	+				-1.9
4,826,948	-				+0.4
4,826,959	+				-1.3
4,826,960	-				+0.1
4,826,960	-				+0.3
4,826,960	-				+0.8
4,826,992	+				-0.7
4,827,032	+		GFF4841	0.19	+0.7
4,827,040	-		GFF4841	0.22	-0.8
4,827,081	-		GFF4841	0.36	+0.4
4,827,089	+		GFF4841	0.38	+0.9
4,827,092	+		GFF4841	0.39	-1.0
4,827,092	+		GFF4841	0.39	+0.1
4,827,095	-		GFF4841	0.40	+0.7
4,827,095	-		GFF4841	0.40	-0.5
4,827,097	+		GFF4841	0.41	+1.3
4,827,097	+		GFF4841	0.41	+0.0
4,827,097	+		GFF4841	0.41	+0.8
4,827,100	-		GFF4841	0.42	-0.5
4,827,105	-		GFF4841	0.44	+0.3
4,827,108	+		GFF4841	0.45	-0.9
4,827,125	+		GFF4841	0.51	+0.6
4,827,133	-		GFF4841	0.53	-0.3
4,827,133	-		GFF4841	0.53	+0.1
4,827,133	-		GFF4841	0.53	-0.1
4,827,156	-		GFF4841	0.61	+0.1