Strain Fitness in Sphingobium sp. HT1-2 around GFF4794

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,788,129	-		GFF4792	0.58	-1.7
4,788,129	-		GFF4792	0.58	-1.1
4,788,148	+		GFF4792	0.60	-1.2
4,788,148	+		GFF4792	0.60	-2.0
4,788,247	-		GFF4792	0.67	-0.9
4,788,247	-		GFF4792	0.67	-1.8
4,788,259	-		GFF4792	0.68	-1.0
4,788,284	+		GFF4792	0.70	-0.5
4,788,284	+		GFF4792	0.70	-2.0
4,788,292	-		GFF4792	0.71	-1.8
4,788,293	+		GFF4792	0.71	-0.8
4,788,301	+		GFF4792	0.71	-0.4
4,788,301	-		GFF4792	0.71	+0.4
4,788,301	-		GFF4792	0.71	-1.0
4,788,301	-		GFF4792	0.71	+0.1
4,788,303	+		GFF4792	0.71	+0.2
4,788,303	+		GFF4792	0.71	-2.4
4,788,309	+		GFF4792	0.72	-2.2
4,788,311	-		GFF4792	0.72	-1.3
4,788,311	-		GFF4792	0.72	-1.8
4,788,311	-		GFF4792	0.72	-0.4
4,788,351	+		GFF4792	0.75	+0.2
4,788,369	+		GFF4792	0.76	-1.2
4,788,409	-		GFF4792	0.79	-1.5
4,788,410	+		GFF4792	0.79	-0.2
4,788,410	+		GFF4792	0.79	-1.6
4,788,410	+		GFF4792	0.79	-2.1
4,788,410	+		GFF4792	0.79	-0.2
4,788,410	+		GFF4792	0.79	-0.8
4,788,410	+		GFF4792	0.79	+0.3
4,788,418	-		GFF4792	0.80	-0.3
4,788,418	-		GFF4792	0.80	-0.3
4,788,420	+		GFF4792	0.80	+0.3
4,788,452	+		GFF4792	0.83	-0.8
4,788,454	+		GFF4792	0.83	-2.1
4,788,512	+		GFF4792	0.87	-0.1
4,788,520	+		GFF4792	0.88	-0.3
4,788,520	+		GFF4792	0.88	+0.4
4,788,520	+		GFF4792	0.88	-1.8
4,788,520	+		GFF4792	0.88	-1.1
4,788,520	-		GFF4792	0.88	-2.7
4,788,528	-		GFF4792	0.88	-0.4
4,788,528	-		GFF4792	0.88	-0.3
4,788,528	-		GFF4792	0.88	-1.0
4,788,528	-		GFF4792	0.88	-0.2
4,788,533	-		GFF4792	0.89	-1.3
4,788,533	-		GFF4792	0.89	+0.6
4,788,533	-		GFF4792	0.89	-0.7
4,788,538	-		GFF4792	0.89	-1.5
4,788,554	-				-2.2
4,788,563	+				-1.3
4,788,571	-				-1.5
4,788,571	-				-2.0
4,788,571	-				-3.0
4,788,573	-				-1.4
4,788,639	+				-1.2
4,788,639	+				-0.3
4,788,639	-				-2.7
4,788,647	-				+0.0
4,788,647	-				-2.5
4,788,647	-				+0.0
4,788,647	-				-1.4
4,788,658	+				-1.6
4,788,665	-				-2.3
4,788,676	+				+0.6
4,788,683	-				-1.3
4,788,683	-				-2.9
4,788,683	-				-0.5
4,788,683	-				+0.1
4,788,683	-				-0.8
4,788,683	-				-1.1
4,788,699	+				-1.5
4,788,699	+				-0.9
4,788,699	+				-2.2
4,788,699	+				-0.9
4,788,707	-				-1.4
4,788,712	-				-1.1
4,788,712	-				+0.1
4,788,716	-				-0.8
4,788,759	-		GFF4793	0.15	+0.2
4,788,779	-		GFF4793	0.20	-1.1
4,788,795	+		GFF4793	0.24	-1.3
4,788,802	+		GFF4793	0.25	-0.1
4,788,802	+		GFF4793	0.25	-0.8
4,788,802	+		GFF4793	0.25	-0.3
4,788,802	+		GFF4793	0.25	-1.5
4,788,803	-		GFF4793	0.26	-1.8
4,788,803	-		GFF4793	0.26	-1.7
4,788,803	-		GFF4793	0.26	-0.8
4,788,810	-		GFF4793	0.27	-2.1
4,788,810	-		GFF4793	0.27	+0.6
4,788,810	-		GFF4793	0.27	-1.5
4,788,810	-		GFF4793	0.27	-0.9
4,788,813	+		GFF4793	0.28	-1.8
4,788,818	+		GFF4793	0.29	-1.0
4,788,818	+		GFF4793	0.29	-1.3
4,788,818	+		GFF4793	0.29	-0.5
4,788,818	+		GFF4793	0.29	-0.9
4,788,818	+		GFF4793	0.29	+0.1
4,788,818	+		GFF4793	0.29	-0.2
4,788,818	+		GFF4793	0.29	-1.1
4,788,818	+		GFF4793	0.29	-1.7
4,788,818	+		GFF4793	0.29	+0.8
4,788,818	+		GFF4793	0.29	+0.1
4,788,820	-		GFF4793	0.30	+0.9
4,788,826	-		GFF4793	0.31	-1.0
4,788,826	-		GFF4793	0.31	-0.8
4,788,831	+		GFF4793	0.33	-1.1
4,788,833	+		GFF4793	0.33	+0.2
4,788,837	+		GFF4793	0.34	-0.7
4,788,841	-		GFF4793	0.35	-1.4
4,788,849	+		GFF4793	0.37	+0.8
4,788,875	+		GFF4793	0.44	-2.0
4,788,887	+		GFF4793	0.47	-1.2
4,788,895	-		GFF4793	0.49	-0.1
4,788,913	+		GFF4793	0.53	-1.9
4,788,916	-		GFF4793	0.54	-1.3
4,788,919	+		GFF4793	0.55	-1.0
4,788,922	-		GFF4793	0.55	-2.5
4,788,924	+		GFF4793	0.56	-0.3
4,788,924	+		GFF4793	0.56	-1.6
4,788,934	+		GFF4793	0.58	-1.1
4,788,942	-		GFF4793	0.60	-0.4
4,788,942	-		GFF4793	0.60	-1.0
4,788,942	-		GFF4793	0.60	+0.1
4,788,942	-		GFF4793	0.60	-2.0
4,788,942	-		GFF4793	0.60	-2.0
4,788,948	+		GFF4793	0.62	-0.7
4,788,948	+		GFF4793	0.62	+1.0
4,788,963	+		GFF4793	0.66	-1.3
4,788,971	+		GFF4793	0.68	-2.8
4,788,984	+		GFF4793	0.71	+0.2
4,788,984	-		GFF4793	0.71	-1.2
4,788,994	+		GFF4793	0.73	+0.1
4,788,994	+		GFF4793	0.73	+0.0
4,788,994	+		GFF4793	0.73	-0.8
4,788,994	+		GFF4793	0.73	+0.2
4,788,994	+		GFF4793	0.73	-1.1
4,788,994	+		GFF4793	0.73	-0.3
4,788,994	+		GFF4793	0.73	-2.2
4,789,002	-		GFF4793	0.75	-0.4
4,789,002	-		GFF4793	0.75	+0.4
4,789,002	-		GFF4793	0.75	-1.4
4,789,002	-		GFF4793	0.75	-0.7
4,789,037	-		GFF4793	0.84	-0.9
4,789,040	+		GFF4793	0.85	-0.3
4,789,041	+		GFF4793	0.85	-1.4
4,789,041	+		GFF4793	0.85	-0.8
4,789,048	-		GFF4793	0.87	-0.5
4,789,048	-		GFF4793	0.87	+0.1
4,789,049	-		GFF4793	0.87	-1.3
4,789,096	+				-1.1
4,790,081	+		GFF4794	0.66	+0.0
4,790,081	+		GFF4794	0.66	-1.2
4,790,081	+		GFF4794	0.66	-2.3
4,790,081	+		GFF4794	0.66	-0.9
4,790,081	+		GFF4794	0.66	-0.8
4,790,081	+		GFF4794	0.66	-1.2
4,790,081	+		GFF4794	0.66	-0.8
4,790,081	+		GFF4794	0.66	-1.3
4,790,081	+		GFF4794	0.66	-0.3
4,790,081	+		GFF4794	0.66	-0.1
4,790,081	+		GFF4794	0.66	-0.7
4,790,089	-		GFF4794	0.67	-0.1
4,790,089	-		GFF4794	0.67	-1.1
4,790,089	-		GFF4794	0.67	-1.5
4,790,089	-		GFF4794	0.67	+0.8
4,790,089	-		GFF4794	0.67	-0.5
4,790,089	-		GFF4794	0.67	+0.9
4,790,089	-		GFF4794	0.67	-0.7
4,790,167	-		GFF4794	0.72	-0.7
4,790,278	-		GFF4794	0.80	-0.6
4,790,572	-				-1.3
4,790,596	-				-1.1
4,790,658	+				-1.6
4,790,666	+				-0.2
4,790,678	-				-1.2
4,790,679	+				-1.6
4,790,705	+				-1.9
4,790,705	+				-2.5
4,790,705	+				-2.3
4,790,705	+				-0.6
4,790,705	+				-0.5
4,790,712	+				-1.3
4,790,713	-				-2.5
4,790,713	-				-2.0
4,790,713	-				-1.9
4,790,713	-				-1.8
4,790,713	-				-0.9
4,790,725	-				-2.1
4,790,727	+				-0.1
4,790,745	-				+0.4
4,790,745	-				-1.5
4,790,771	+				-0.2
4,790,771	+				-0.0
4,790,771	+				+0.7
4,790,771	+				-0.3
4,790,771	+				-1.1
4,790,771	+				-0.8
4,790,771	+				-0.9
4,790,771	+				-1.3
4,790,771	+				-1.0
4,790,771	+				-1.3
4,790,773	-				-0.8
4,790,779	-				-2.5
4,790,779	-				+0.2
4,790,779	-				-0.4
4,790,779	-				-0.4
4,790,779	-				-1.5
4,790,779	-				-0.9
4,790,779	-				-1.2
4,790,779	-				-1.6
4,790,790	-				-1.5
4,790,790	-				+1.4
4,790,790	-				-0.1
4,790,819	+		GFF4795	0.13	+1.0
4,790,826	+		GFF4795	0.15	-1.9
4,790,850	+		GFF4795	0.20	+0.2
4,790,850	-		GFF4795	0.20	-0.4
4,790,850	-		GFF4795	0.20	-0.6
4,790,858	+		GFF4795	0.22	-0.3
4,790,858	+		GFF4795	0.22	+0.8
4,790,858	-		GFF4795	0.22	-1.9
4,790,860	-		GFF4795	0.23	-0.2
4,790,860	-		GFF4795	0.23	-1.5
4,790,862	+		GFF4795	0.23	-0.3
4,790,881	-		GFF4795	0.27	-0.2
4,790,890	+		GFF4795	0.29	-2.9
4,790,890	+		GFF4795	0.29	-1.8
4,790,890	+		GFF4795	0.29	-2.4
4,790,890	+		GFF4795	0.29	-1.8
4,790,898	-		GFF4795	0.31	-1.7
4,790,898	-		GFF4795	0.31	-1.0
4,790,898	-		GFF4795	0.31	-1.8
4,790,898	-		GFF4795	0.31	-0.2
4,790,898	-		GFF4795	0.31	-0.5
4,790,905	+		GFF4795	0.32	-0.2
4,790,920	-		GFF4795	0.36	-1.3
4,790,927	+		GFF4795	0.37	-1.8
4,790,933	-		GFF4795	0.39	-2.2
4,790,940	-		GFF4795	0.40	-0.8
4,790,947	+		GFF4795	0.42	-0.7
4,790,947	+		GFF4795	0.42	+0.4
4,790,947	+		GFF4795	0.42	-0.8
4,790,955	-		GFF4795	0.43	-0.2
4,790,955	-		GFF4795	0.43	-1.2
4,790,955	-		GFF4795	0.43	-1.4
4,790,957	+		GFF4795	0.44	-1.5
4,790,957	+		GFF4795	0.44	-0.3
4,790,957	+		GFF4795	0.44	-1.9
4,790,957	+		GFF4795	0.44	-0.5
4,790,957	+		GFF4795	0.44	-0.7
4,790,957	+		GFF4795	0.44	-1.0
4,790,957	+		GFF4795	0.44	-2.2
4,790,957	+		GFF4795	0.44	+0.8
4,790,957	+		GFF4795	0.44	-1.1
4,790,957	+		GFF4795	0.44	-0.8
4,790,957	+		GFF4795	0.44	-0.7
4,790,965	-		GFF4795	0.46	-1.3
4,790,965	-		GFF4795	0.46	-0.8
4,790,965	-		GFF4795	0.46	+0.9
4,790,965	-		GFF4795	0.46	-3.2
4,790,965	-		GFF4795	0.46	-0.0
4,790,965	-		GFF4795	0.46	-0.2
4,790,965	-		GFF4795	0.46	-2.2
4,790,965	-		GFF4795	0.46	-1.8
4,790,965	-		GFF4795	0.46	-0.1
4,790,965	-		GFF4795	0.46	-2.8
4,790,967	+		GFF4795	0.46	-0.4
4,790,973	+		GFF4795	0.47	+0.7
4,790,975	-		GFF4795	0.48	-0.9
4,790,976	-		GFF4795	0.48	-1.3
4,790,979	+		GFF4795	0.49	-1.7
4,790,988	-		GFF4795	0.51	-0.3
4,791,006	-		GFF4795	0.55	+0.1
4,791,015	+		GFF4795	0.57	-1.1
4,791,032	-		GFF4795	0.60	-0.8
4,791,037	+		GFF4795	0.62	-1.4
4,791,037	+		GFF4795	0.62	-1.9
4,791,045	-		GFF4795	0.63	-0.2
4,791,068	-		GFF4795	0.68	-1.3
4,791,069	-		GFF4795	0.69	+0.5
4,791,071	+		GFF4795	0.69	-1.9
4,791,099	+		GFF4795	0.75	-0.8
4,791,107	-		GFF4795	0.77	-1.8
4,791,110	-		GFF4795	0.78	-1.6
4,791,123	-		GFF4795	0.81	-0.8
4,791,125	+		GFF4795	0.81	-1.9
4,791,131	-		GFF4795	0.82	-1.2
4,791,151	+		GFF4795	0.87	+0.1
4,791,153	+		GFF4795	0.87	-2.4
4,791,153	+		GFF4795	0.87	-0.1
4,791,153	+		GFF4795	0.87	-0.1
4,791,153	+		GFF4795	0.87	-0.9
4,791,153	+		GFF4795	0.87	-0.8
4,791,153	+		GFF4795	0.87	-1.1
4,791,153	+		GFF4795	0.87	+0.0
4,791,153	+		GFF4795	0.87	-2.0
4,791,153	+		GFF4795	0.87	-0.8
4,791,153	+		GFF4795	0.87	-0.3
4,791,153	+		GFF4795	0.87	-1.1
4,791,153	+		GFF4795	0.87	-0.2
4,791,153	+		GFF4795	0.87	+0.8
4,791,153	+		GFF4795	0.87	-0.5
4,791,153	+		GFF4795	0.87	-1.0
4,791,153	+		GFF4795	0.87	-0.6
4,791,153	+		GFF4795	0.87	-1.7
4,791,153	+		GFF4795	0.87	+0.7
4,791,153	+		GFF4795	0.87	-1.7
4,791,153	+		GFF4795	0.87	-0.6
4,791,161	-		GFF4795	0.89	-0.4
4,791,161	-		GFF4795	0.89	-1.4
4,791,161	-		GFF4795	0.89	-0.0
4,791,161	-		GFF4795	0.89	+0.0
4,791,161	-		GFF4795	0.89	-1.6
4,791,161	-		GFF4795	0.89	-0.5
4,791,161	-		GFF4795	0.89	-1.6
4,791,161	-		GFF4795	0.89	-1.1
4,791,161	-		GFF4795	0.89	-1.9
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-1.4
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-1.0
4,791,161	-		GFF4795	0.89	-1.2
4,791,161	-		GFF4795	0.89	-1.8
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-1.2
4,791,161	-		GFF4795	0.89	-3.0
4,791,161	-		GFF4795	0.89	-0.6
4,791,161	-		GFF4795	0.89	-2.1
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-1.4
4,791,161	-		GFF4795	0.89	-0.8
4,791,161	-		GFF4795	0.89	-1.9
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	-1.0
4,791,161	-		GFF4795	0.89	-1.3
4,791,161	-		GFF4795	0.89	-1.9
4,791,161	-		GFF4795	0.89	-1.5
4,791,161	-		GFF4795	0.89	+0.5
4,791,161	-		GFF4795	0.89	-1.7
4,791,161	-		GFF4795	0.89	+0.7
4,791,176	+				-1.0
4,791,214	+				+1.1
4,791,221	+				-1.2
4,791,251	+				+0.3
4,791,261	+				-1.9
4,791,269	-				-0.4
4,791,287	-				-2.1
4,791,287	-				+0.8
4,791,298	+				+0.2
4,791,306	+				-0.9
4,791,346	+				+0.0
4,791,354	-				+0.0
4,791,361	+				-1.5
4,791,361	+				+0.5
4,791,369	-				-1.9
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