Strain Fitness in Sphingobium sp. HT1-2 around GFF4686

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,686,643	-		GFF4685	0.49	-0.7
4,686,643	-		GFF4685	0.49	-0.4
4,686,660	+		GFF4685	0.50	+1.2
4,686,662	+		GFF4685	0.50	+0.3
4,686,662	+		GFF4685	0.50	-1.2
4,686,667	+		GFF4685	0.50	+0.3
4,686,668	-		GFF4685	0.50	-0.3
4,686,668	-		GFF4685	0.50	-0.7
4,686,668	-		GFF4685	0.50	-1.7
4,686,670	-		GFF4685	0.51	+0.4
4,686,670	-		GFF4685	0.51	-0.5
4,686,675	-		GFF4685	0.51	+1.3
4,686,675	-		GFF4685	0.51	+0.9
4,686,675	-		GFF4685	0.51	+1.1
4,686,683	-		GFF4685	0.51	-1.6
4,686,685	-		GFF4685	0.51	+1.2
4,686,755	+		GFF4685	0.56	-1.5
4,686,795	+		GFF4685	0.58	-1.0
4,686,795	+		GFF4685	0.58	-1.5
4,686,795	+		GFF4685	0.58	+0.7
4,686,800	+		GFF4685	0.59	-0.5
4,686,800	+		GFF4685	0.59	+0.5
4,686,805	+		GFF4685	0.59	-0.7
4,686,805	+		GFF4685	0.59	+0.2
4,686,805	+		GFF4685	0.59	-0.7
4,686,805	+		GFF4685	0.59	-1.4
4,686,805	+		GFF4685	0.59	-1.5
4,686,805	+		GFF4685	0.59	-0.7
4,686,808	-		GFF4685	0.59	-0.9
4,686,812	+		GFF4685	0.59	-0.7
4,686,813	-		GFF4685	0.59	+0.8
4,686,813	-		GFF4685	0.59	-0.9
4,686,813	-		GFF4685	0.59	-1.1
4,686,813	-		GFF4685	0.59	-0.9
4,686,813	-		GFF4685	0.59	+1.3
4,686,820	-		GFF4685	0.60	+0.2
4,686,823	-		GFF4685	0.60	-0.7
4,686,830	-		GFF4685	0.60	+0.5
4,686,849	+		GFF4685	0.62	+0.8
4,686,857	-		GFF4685	0.62	-0.1
4,686,857	-		GFF4685	0.62	-0.1
4,686,861	+		GFF4685	0.62	+1.5
4,686,861	+		GFF4685	0.62	-0.9
4,686,869	-		GFF4685	0.63	-0.7
4,686,876	-		GFF4685	0.63	+0.3
4,686,917	+		GFF4685	0.66	-0.7
4,686,917	+		GFF4685	0.66	-0.1
4,686,917	+		GFF4685	0.66	-1.3
4,686,917	+		GFF4685	0.66	-0.5
4,686,925	-		GFF4685	0.66	-1.4
4,686,938	+		GFF4685	0.67	+0.5
4,686,938	+		GFF4685	0.67	-0.1
4,686,938	+		GFF4685	0.67	-0.0
4,686,938	+		GFF4685	0.67	+0.3
4,686,938	+		GFF4685	0.67	+1.1
4,686,946	-		GFF4685	0.67	-0.2
4,686,946	-		GFF4685	0.67	-1.3
4,686,946	-		GFF4685	0.67	+1.0
4,686,946	-		GFF4685	0.67	-0.7
4,686,993	-		GFF4685	0.70	+0.5
4,686,993	-		GFF4685	0.70	+0.6
4,687,009	+		GFF4685	0.71	-0.7
4,687,025	+		GFF4685	0.72	-1.0
4,687,078	-		GFF4685	0.76	-1.8
4,687,080	+		GFF4685	0.76	-1.3
4,687,080	+		GFF4685	0.76	-0.5
4,687,082	-		GFF4685	0.76	-1.6
4,687,088	+		GFF4685	0.76	-0.4
4,687,098	+		GFF4685	0.77	-1.2
4,687,098	+		GFF4685	0.77	+0.3
4,687,098	+		GFF4685	0.77	-0.2
4,687,098	+		GFF4685	0.77	-1.6
4,687,106	-		GFF4685	0.77	-0.9
4,687,134	-		GFF4685	0.79	+0.6
4,687,135	-		GFF4685	0.79	+1.3
4,687,145	+		GFF4685	0.80	-0.0
4,687,145	+		GFF4685	0.80	-1.3
4,687,145	+		GFF4685	0.80	+0.3
4,687,145	+		GFF4685	0.80	+0.8
4,687,145	+		GFF4685	0.80	-1.3
4,687,145	+		GFF4685	0.80	+0.5
4,687,145	+		GFF4685	0.80	-1.2
4,687,145	+		GFF4685	0.80	-1.0
4,687,145	+		GFF4685	0.80	-1.0
4,687,153	-		GFF4685	0.80	-0.9
4,687,153	-		GFF4685	0.80	-1.2
4,687,153	-		GFF4685	0.80	-1.2
4,687,153	-		GFF4685	0.80	+0.3
4,687,153	-		GFF4685	0.80	-0.2
4,687,153	-		GFF4685	0.80	-1.6
4,687,153	-		GFF4685	0.80	-1.0
4,687,153	-		GFF4685	0.80	+0.1
4,687,153	-		GFF4685	0.80	-0.7
4,687,153	-		GFF4685	0.80	+0.0
4,687,153	-		GFF4685	0.80	+0.5
4,687,153	-		GFF4685	0.80	-0.7
4,687,155	+		GFF4685	0.80	-0.8
4,687,176	+		GFF4685	0.82	-0.4
4,687,177	+		GFF4685	0.82	+1.0
4,687,177	+		GFF4685	0.82	-0.2
4,687,194	+		GFF4685	0.83	+0.1
4,687,198	-		GFF4685	0.83	+0.1
4,687,202	-		GFF4685	0.83	+0.7
4,687,202	-		GFF4685	0.83	-0.4
4,687,202	-		GFF4685	0.83	+0.8
4,687,207	+		GFF4685	0.83	-0.9
4,687,212	+		GFF4685	0.84	+0.3
4,687,293	+		GFF4685	0.89	-0.7
4,687,293	+		GFF4685	0.89	-1.3
4,687,301	-		GFF4685	0.89	-0.2
4,687,311	-		GFF4685	0.90	+0.1
4,687,324	+				-1.0
4,687,324	+				-2.0
4,687,324	+				+0.2
4,687,330	+				-0.2
4,687,332	-				+0.7
4,687,332	-				+0.2
4,687,332	-				+1.0
4,687,332	-				+1.2
4,687,332	-				+0.1
4,687,338	-				+1.1
4,687,338	-				-0.2
4,687,340	+				-1.2
4,687,340	+				-1.6
4,687,348	-				-0.5
4,687,389	+				-0.3
4,687,442	+				-1.1
4,687,478	+				+1.3
4,687,480	-				+1.1
4,687,486	+				+0.3
4,687,486	-				+0.5
4,687,486	-				-0.1
4,687,486	-				+0.0
4,687,513	+				-1.0
4,687,517	+				+0.2
4,687,536	-				-0.4
4,687,542	+				-1.4
4,687,550	-				+0.6
4,687,567	-				-0.3
4,687,567	-				-1.2
4,687,587	+				+0.5
4,687,592	-				+0.5
4,687,599	+				+0.1
4,687,606	-				-0.6
4,687,617	-				-0.5
4,687,620	-				-0.3
4,687,625	+				-0.7
4,687,625	-				-1.3
4,687,625	-				+0.3
4,687,631	-				-0.6
4,687,633	+				+0.0
4,687,633	+				-0.9
4,687,633	-				+0.3
4,687,633	-				-0.6
4,687,640	+				-0.3
4,687,641	-				+0.5
4,687,641	-				-0.8
4,687,679	+				-1.0
4,687,693	+				-0.3
4,687,696	+				-1.7
4,687,698	+				+1.0
4,687,727	-				-1.0
4,687,738	+		GFF4686	0.11	-1.9
4,687,738	+		GFF4686	0.11	+0.4
4,687,745	+		GFF4686	0.12	+0.7
4,687,760	-		GFF4686	0.13	-0.5
4,687,823	-		GFF4686	0.20	-1.1
4,687,824	+		GFF4686	0.20	-0.8
4,687,824	+		GFF4686	0.20	+0.0
4,687,824	+		GFF4686	0.20	+0.8
4,687,834	+		GFF4686	0.22	+0.6
4,687,852	-		GFF4686	0.24	-0.3
4,687,853	+		GFF4686	0.24	-1.2
4,687,853	+		GFF4686	0.24	-1.3
4,687,853	+		GFF4686	0.24	-1.1
4,687,861	-		GFF4686	0.25	+1.1
4,687,861	-		GFF4686	0.25	+0.5
4,687,861	-		GFF4686	0.25	-0.8
4,687,861	-		GFF4686	0.25	-1.1
4,687,876	+		GFF4686	0.26	-0.0
4,687,884	-		GFF4686	0.27	+1.0
4,687,886	+		GFF4686	0.27	-1.3
4,687,886	+		GFF4686	0.27	-1.0
4,687,886	+		GFF4686	0.27	-0.8
4,687,894	-		GFF4686	0.28	+0.1
4,687,894	-		GFF4686	0.28	+0.5
4,687,924	+		GFF4686	0.32	-0.1
4,687,924	-		GFF4686	0.32	-0.5
4,687,946	+		GFF4686	0.34	+0.2
4,687,961	+		GFF4686	0.36	-0.5
4,687,970	+		GFF4686	0.37	-0.5
4,687,970	+		GFF4686	0.37	-0.3
4,688,019	+		GFF4686	0.42	-1.1
4,688,046	+		GFF4686	0.46	+0.1
4,688,138	+		GFF4686	0.56	+1.4
4,688,161	+		GFF4686	0.59	-1.0
4,688,169	-		GFF4686	0.59	+0.0
4,688,169	-		GFF4686	0.59	+0.2
4,688,179	-		GFF4686	0.61	+0.0
4,688,249	+		GFF4686	0.68	+1.0
4,688,254	+		GFF4686	0.69	-0.2
4,688,261	+		GFF4686	0.70	-0.0
4,688,261	+		GFF4686	0.70	-0.9
4,688,342	+		GFF4686	0.79	+0.1
4,688,380	+		GFF4686	0.83	+0.1
4,688,390	+		GFF4686	0.84	+0.0
4,688,399	-		GFF4686	0.85	-0.1
4,688,422	-		GFF4686	0.88	-0.7
4,688,423	+		GFF4686	0.88	-1.3
4,688,423	+		GFF4686	0.88	+0.2
4,688,423	+		GFF4686	0.88	-0.5
4,688,423	+		GFF4686	0.88	+0.4
4,688,423	+		GFF4686	0.88	+1.0
4,688,430	+		GFF4686	0.89	-0.0
4,688,431	-		GFF4686	0.89	-2.8
4,688,431	-		GFF4686	0.89	+0.6
4,688,431	-		GFF4686	0.89	-0.1
4,688,431	-		GFF4686	0.89	+0.2
4,688,445	-				-1.2
4,688,500	+				-1.8
4,688,521	+				-1.1
4,688,521	+				-0.8
4,688,521	+				-0.9
4,688,521	+				+0.7
4,688,521	+				-0.9
4,688,521	+				-0.1
4,688,521	+				+0.3
4,688,521	+				+0.6
4,688,527	+				+0.2
4,688,529	-				+0.1
4,688,529	-				+1.7
4,688,529	-				+0.3
4,688,533	+				-1.4
4,688,535	-				+0.5
4,688,535	-				+0.7
4,688,541	-				-0.6
4,688,542	-				-1.0
4,688,555	+				-0.5
4,688,566	+				+0.6
4,688,568	-				+1.3
4,688,603	+				-0.4
4,688,606	-				+1.2
4,688,609	+				-0.8
4,688,633	+				+1.3
4,688,647	+				-1.3
4,688,650	-				+0.3
4,688,655	-				-1.3
4,688,655	-				-1.0
4,688,655	-				-0.7
4,688,675	+				+1.3
4,688,675	+				+0.1
4,688,683	-				-0.1
4,688,683	-				+0.1
4,688,700	-				-1.2
4,688,700	-				-0.3
4,688,702	+				-1.1
4,688,702	+				-0.6
4,688,702	+				-0.9
4,688,702	+				-0.1
4,688,710	-				-2.1
4,688,710	-				+0.0
4,688,710	-				-0.8
4,688,710	-				+0.9
4,688,710	-				-0.4
4,688,719	+				-0.1
4,688,719	+				-1.3
4,688,719	+				+0.4
4,688,727	-		GFF4687	0.10	-0.8
4,688,727	-		GFF4687	0.10	-0.1
4,688,727	-		GFF4687	0.10	+0.5
4,688,735	-		GFF4687	0.11	-0.1
4,688,749	+		GFF4687	0.12	+0.5
4,688,755	+		GFF4687	0.13	-0.7
4,688,760	+		GFF4687	0.13	-2.3
4,688,760	+		GFF4687	0.13	+0.1
4,688,768	-		GFF4687	0.14	-0.8
4,688,783	-		GFF4687	0.16	-0.2
4,688,792	+		GFF4687	0.16	-0.5
4,688,794	-		GFF4687	0.17	-0.5
4,688,800	-		GFF4687	0.17	-0.7
4,688,817	-		GFF4687	0.19	+0.5
4,688,828	-		GFF4687	0.20	-0.5
4,688,832	-		GFF4687	0.20	+0.0
4,688,853	+		GFF4687	0.22	+0.1
4,688,885	+		GFF4687	0.25	+0.2
4,688,885	+		GFF4687	0.25	+1.1
4,688,921	+		GFF4687	0.29	-1.2
4,688,929	-		GFF4687	0.30	-0.3
4,688,929	-		GFF4687	0.30	-0.3
4,688,940	-		GFF4687	0.31	-1.3
4,688,950	+		GFF4687	0.32	-0.1
4,688,950	+		GFF4687	0.32	+0.6
4,688,950	-		GFF4687	0.32	+1.2
4,688,958	-		GFF4687	0.32	+0.4
4,688,971	-		GFF4687	0.34	-1.1
4,688,975	+		GFF4687	0.34	-0.7
4,688,982	-		GFF4687	0.35	+0.5
4,688,994	+		GFF4687	0.36	+1.3
4,689,018	+		GFF4687	0.38	-1.9
4,689,077	+		GFF4687	0.44	+0.2
4,689,077	+		GFF4687	0.44	+0.6
4,689,077	+		GFF4687	0.44	-0.4
4,689,077	+		GFF4687	0.44	+1.0
4,689,077	+		GFF4687	0.44	-0.5
4,689,077	+		GFF4687	0.44	-1.5
4,689,077	+		GFF4687	0.44	+0.1
4,689,077	+		GFF4687	0.44	-0.8
4,689,077	+		GFF4687	0.44	-0.3
4,689,077	+		GFF4687	0.44	+0.6
4,689,077	+		GFF4687	0.44	+0.2
4,689,085	-		GFF4687	0.45	-1.0
4,689,085	-		GFF4687	0.45	-0.7
4,689,085	-		GFF4687	0.45	+0.3
4,689,085	-		GFF4687	0.45	+0.5
4,689,096	-		GFF4687	0.46	+0.3
4,689,106	-		GFF4687	0.47	-0.8
4,689,142	+		GFF4687	0.50	-0.1
4,689,155	-		GFF4687	0.51	+1.5
4,689,171	+		GFF4687	0.53	-0.7
4,689,179	-		GFF4687	0.54	-1.4
4,689,198	-		GFF4687	0.55	+1.0
4,689,230	+		GFF4687	0.59	+0.9
4,689,230	+		GFF4687	0.59	-1.5
4,689,230	+		GFF4687	0.59	-1.0
4,689,238	-		GFF4687	0.59	+0.4
4,689,238	-		GFF4687	0.59	+1.7
4,689,243	-		GFF4687	0.60	-0.7
4,689,264	-		GFF4687	0.62	+0.5
4,689,271	+		GFF4687	0.63	-1.3
4,689,273	+		GFF4687	0.63	+0.7
4,689,273	+		GFF4687	0.63	+0.2
4,689,273	+		GFF4687	0.63	+1.9
4,689,274	+		GFF4687	0.63	-0.8
4,689,278	+		GFF4687	0.63	+0.7
4,689,280	-		GFF4687	0.63	-0.9
4,689,281	-		GFF4687	0.63	-0.5
4,689,286	-		GFF4687	0.64	+0.5
4,689,287	+		GFF4687	0.64	-1.2
4,689,287	+		GFF4687	0.64	-1.6
4,689,287	+		GFF4687	0.64	-2.0
4,689,295	-		GFF4687	0.65	-0.2
4,689,316	-		GFF4687	0.67	-1.9
4,689,318	+		GFF4687	0.67	-0.7
4,689,321	+		GFF4687	0.67	+0.3
4,689,323	+		GFF4687	0.68	+0.2
4,689,323	+		GFF4687	0.68	-0.5
4,689,323	+		GFF4687	0.68	-0.5
4,689,326	-		GFF4687	0.68	+0.6
4,689,326	-		GFF4687	0.68	+0.5
4,689,331	+		GFF4687	0.68	-0.5
4,689,331	+		GFF4687	0.68	-1.5
4,689,333	+		GFF4687	0.68	+0.0
4,689,333	+		GFF4687	0.68	+0.0
4,689,333	+		GFF4687	0.68	+0.0
4,689,333	+		GFF4687	0.68	-2.0
4,689,333	+		GFF4687	0.68	-0.7
4,689,339	-		GFF4687	0.69	+0.9
4,689,339	-		GFF4687	0.69	+0.1
4,689,341	-		GFF4687	0.69	+0.5
4,689,346	+		GFF4687	0.70	-0.7
4,689,346	+		GFF4687	0.70	+0.1
4,689,346	+		GFF4687	0.70	+0.6
4,689,346	+		GFF4687	0.70	-0.1
4,689,351	+		GFF4687	0.70	+1.3
4,689,354	-		GFF4687	0.71	-1.7
4,689,354	-		GFF4687	0.71	+0.3
4,689,354	-		GFF4687	0.71	-0.5
4,689,356	-		GFF4687	0.71	-0.9
4,689,358	+		GFF4687	0.71	+0.0
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4,689,401	-		GFF4687	0.75	-0.4
4,689,414	-		GFF4687	0.76	-2.5
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4,689,519	-		GFF4687	0.86	-1.1