Strain Fitness in Sphingobium sp. HT1-2 around GFF4544

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,536,481	+		GFF4543	0.66	-2.3
4,536,521	+		GFF4543	0.68	-1.4
4,536,561	+		GFF4543	0.70	-2.2
4,536,562	-		GFF4543	0.70	+0.0
4,536,577	+		GFF4543	0.70	-0.3
4,536,591	-		GFF4543	0.71	-1.9
4,536,602	+		GFF4543	0.71	-0.5
4,536,607	+		GFF4543	0.71	-0.6
4,536,607	+		GFF4543	0.71	-0.8
4,536,630	+		GFF4543	0.72	-0.8
4,536,633	-		GFF4543	0.72	-2.5
4,536,633	-		GFF4543	0.72	+0.1
4,536,635	+		GFF4543	0.73	-1.0
4,536,638	-		GFF4543	0.73	-1.9
4,536,643	+		GFF4543	0.73	-0.3
4,536,643	+		GFF4543	0.73	+1.0
4,536,643	-		GFF4543	0.73	-0.3
4,536,656	-		GFF4543	0.73	+0.3
4,536,698	-		GFF4543	0.75	+0.4
4,536,727	+		GFF4543	0.76	-1.1
4,536,764	+		GFF4543	0.78	-1.3
4,536,783	+		GFF4543	0.79	-2.3
4,536,805	-		GFF4543	0.79	-1.1
4,536,808	+		GFF4543	0.80	-1.4
4,536,810	-		GFF4543	0.80	-0.8
4,536,831	+		GFF4543	0.80	-1.2
4,536,839	-		GFF4543	0.81	-1.0
4,536,844	+		GFF4543	0.81	-1.6
4,536,851	+		GFF4543	0.81	-0.1
4,536,859	+		GFF4543	0.82	+0.5
4,536,869	-		GFF4543	0.82	-0.2
4,536,876	-		GFF4543	0.82	-0.3
4,536,886	-		GFF4543	0.83	-0.6
4,536,921	+		GFF4543	0.84	-0.6
4,536,921	+		GFF4543	0.84	-1.2
4,536,921	+		GFF4543	0.84	-0.1
4,536,921	+		GFF4543	0.84	-1.5
4,536,921	+		GFF4543	0.84	-1.6
4,536,921	+		GFF4543	0.84	+0.7
4,536,921	+		GFF4543	0.84	-1.5
4,536,921	+		GFF4543	0.84	-0.6
4,536,921	+		GFF4543	0.84	-0.9
4,536,921	+		GFF4543	0.84	-1.0
4,536,921	+		GFF4543	0.84	-0.5
4,536,921	+		GFF4543	0.84	-1.4
4,536,921	+		GFF4543	0.84	-0.3
4,536,921	+		GFF4543	0.84	-0.5
4,536,921	+		GFF4543	0.84	-0.5
4,536,929	-		GFF4543	0.84	-1.2
4,536,929	-		GFF4543	0.84	-0.1
4,536,929	-		GFF4543	0.84	-1.9
4,536,929	-		GFF4543	0.84	-0.8
4,536,929	-		GFF4543	0.84	-0.7
4,536,929	-		GFF4543	0.84	-1.2
4,536,929	-		GFF4543	0.84	+0.9
4,536,929	-		GFF4543	0.84	-0.6
4,536,929	-		GFF4543	0.84	-2.0
4,536,929	-		GFF4543	0.84	-0.5
4,536,929	-		GFF4543	0.84	-1.4
4,536,929	-		GFF4543	0.84	+0.0
4,536,929	-		GFF4543	0.84	-0.1
4,536,929	-		GFF4543	0.84	-0.5
4,536,929	-		GFF4543	0.84	-0.2
4,536,929	-		GFF4543	0.84	-1.8
4,536,929	-		GFF4543	0.84	-0.8
4,536,946	+		GFF4543	0.85	-0.1
4,536,956	+		GFF4543	0.86	-1.2
4,536,956	+		GFF4543	0.86	-1.8
4,536,956	+		GFF4543	0.86	-1.6
4,536,956	+		GFF4543	0.86	-1.5
4,536,956	+		GFF4543	0.86	+0.2
4,536,964	-		GFF4543	0.86	+0.7
4,536,964	-		GFF4543	0.86	-0.2
4,536,964	-		GFF4543	0.86	-1.1
4,536,964	-		GFF4543	0.86	-0.7
4,536,964	-		GFF4543	0.86	-2.7
4,536,967	+		GFF4543	0.86	-1.1
4,536,972	+		GFF4543	0.86	-0.4
4,536,975	-		GFF4543	0.86	-0.5
4,536,977	+		GFF4543	0.86	-2.1
4,536,984	+		GFF4543	0.87	-0.5
4,536,989	+		GFF4543	0.87	-1.2
4,536,992	-		GFF4543	0.87	-1.9
4,536,992	-		GFF4543	0.87	-1.2
4,536,997	+		GFF4543	0.87	-1.1
4,536,997	-		GFF4543	0.87	+0.6
4,536,997	-		GFF4543	0.87	-2.1
4,536,997	-		GFF4543	0.87	-1.4
4,537,002	+		GFF4543	0.87	-1.6
4,537,003	-		GFF4543	0.87	+0.7
4,537,005	-		GFF4543	0.88	-1.5
4,537,023	-		GFF4543	0.88	-1.2
4,537,025	+		GFF4543	0.88	+0.4
4,537,033	+		GFF4543	0.89	+0.1
4,537,033	+		GFF4543	0.89	-0.5
4,537,033	+		GFF4543	0.89	-0.8
4,537,033	+		GFF4543	0.89	-0.8
4,537,033	+		GFF4543	0.89	+0.2
4,537,033	+		GFF4543	0.89	-1.0
4,537,033	-		GFF4543	0.89	-0.2
4,537,033	-		GFF4543	0.89	-0.2
4,537,041	-		GFF4543	0.89	-2.1
4,537,041	-		GFF4543	0.89	+0.9
4,537,041	-		GFF4543	0.89	+0.3
4,537,041	-		GFF4543	0.89	-0.6
4,537,051	+		GFF4543	0.89	-1.6
4,537,059	-		GFF4543	0.90	+0.2
4,537,069	-				+0.1
4,537,094	+				+0.4
4,537,094	+				+0.2
4,537,094	+				+0.5
4,537,094	+				-1.3
4,537,102	+				-1.5
4,537,102	-				-1.5
4,537,102	-				+0.2
4,537,139	-				-0.8
4,537,195	+				-1.8
4,537,195	+				+1.4
4,537,203	-				-1.8
4,537,203	-				-0.5
4,537,216	-				-2.1
4,537,224	+				-0.6
4,537,225	+				-0.1
4,537,232	-				-0.7
4,537,248	+				-0.8
4,537,256	-				-1.5
4,537,264	-				-1.3
4,537,287	-				+2.0
4,537,314	-				-1.5
4,537,324	+				-0.2
4,537,332	+				+0.1
4,537,340	-				-1.1
4,537,350	-				+0.0
4,537,365	+				-1.3
4,537,370	+				-0.6
4,537,370	+				-0.1
4,537,370	+				-0.4
4,537,370	+				-0.6
4,537,370	+				-1.2
4,537,373	-				-0.0
4,537,378	-				-1.1
4,537,378	-				+1.6
4,537,378	-				-0.5
4,537,378	-				-1.1
4,537,378	-				+1.7
4,537,383	-				-0.8
4,537,383	-				-0.3
4,537,399	-				-0.6
4,537,408	-				-2.4
4,537,418	-				-0.5
4,537,418	-				-1.1
4,537,427	-				-2.1
4,537,439	+				-1.0
4,537,444	+				-1.0
4,537,444	+				-1.5
4,537,444	+				-1.6
4,537,444	+				-1.7
4,537,444	+				-0.1
4,537,444	+				-0.7
4,537,444	+				-1.2
4,537,447	-				+0.4
4,537,449	+				+0.1
4,537,449	+				-0.8
4,537,449	+				-2.1
4,537,452	-				-1.9
4,537,452	-				-0.1
4,537,452	-				-1.2
4,537,452	-				+0.2
4,537,452	-				-1.4
4,537,452	-				-1.0
4,537,452	-				+0.0
4,537,452	-				-0.3
4,537,457	+				-1.8
4,537,457	-				-0.1
4,537,457	-				-1.2
4,537,462	+				-0.6
4,537,465	-				+0.2
4,537,467	+				-0.9
4,537,467	+				-1.2
4,537,467	+				-1.3
4,537,467	+				-0.9
4,537,467	+				-0.1
4,537,467	+				+0.8
4,537,467	+				+0.0
4,537,467	+				-1.2
4,537,467	+				-1.5
4,537,475	-				-0.5
4,537,475	-				-0.6
4,537,475	-				+0.2
4,537,475	-				+0.4
4,537,475	-				-0.9
4,537,475	-				-0.8
4,537,481	+				-1.1
4,537,511	+		GFF4544	0.17	-1.9
4,537,519	-		GFF4544	0.22	-1.2
4,537,521	+		GFF4544	0.23	-1.9
4,537,529	+		GFF4544	0.27	-2.6
4,537,529	+		GFF4544	0.27	+0.1
4,537,574	-		GFF4544	0.51	-0.5
4,537,577	+		GFF4544	0.52	-2.2
4,537,577	+		GFF4544	0.52	-0.7
4,537,586	-		GFF4544	0.57	-2.4
4,537,586	-		GFF4544	0.57	-0.5
4,537,631	+		GFF4544	0.81	-0.5
4,537,650	+				-1.8
4,537,650	-				-2.4
4,537,650	-				-1.7
4,537,658	-				-1.6
4,537,663	-				-1.7
4,537,665	-				-1.0
4,537,675	-				-1.0
4,537,745	-				-0.8
4,537,771	-				+0.4
4,537,771	-				-1.9
4,537,771	-				+0.0
4,537,771	-				+0.5
4,537,773	+				+1.3
4,537,781	-				-0.1
4,537,784	+				+0.3
4,537,792	-				-0.2
4,537,792	-				-2.6
4,537,792	-				+0.4
4,537,792	-				+0.7
4,537,792	-				-0.6
4,537,802	-				-0.9
4,537,848	-		GFF4545	0.11	-0.0
4,537,853	+		GFF4545	0.11	-0.9
4,537,853	+		GFF4545	0.11	+0.1
4,537,858	+		GFF4545	0.12	-2.1
4,537,861	-		GFF4545	0.13	-0.4
4,537,861	-		GFF4545	0.13	-1.8
4,537,864	+		GFF4545	0.13	-1.0
4,537,869	+		GFF4545	0.14	-1.0
4,537,902	+		GFF4545	0.19	-0.8
4,537,910	-		GFF4545	0.20	+0.9
4,537,976	+		GFF4545	0.30	+0.9
4,537,976	+		GFF4545	0.30	-1.3
4,537,984	-		GFF4545	0.31	+0.1
4,537,996	+		GFF4545	0.33	-0.2
4,538,002	-		GFF4545	0.34	-0.6
4,538,002	-		GFF4545	0.34	-1.7
4,538,015	+		GFF4545	0.36	-1.3
4,538,023	-		GFF4545	0.37	-0.2
4,538,023	-		GFF4545	0.37	-1.1
4,538,052	-		GFF4545	0.41	-1.1
4,538,056	+		GFF4545	0.42	-0.1
4,538,056	+		GFF4545	0.42	-0.6
4,538,058	+		GFF4545	0.42	-1.2
4,538,064	-		GFF4545	0.43	-0.5
4,538,064	-		GFF4545	0.43	+0.3
4,538,064	-		GFF4545	0.43	-0.8
4,538,073	+		GFF4545	0.44	+0.4
4,538,073	+		GFF4545	0.44	-1.2
4,538,073	+		GFF4545	0.44	+0.4
4,538,073	+		GFF4545	0.44	-1.3
4,538,073	+		GFF4545	0.44	-2.0
4,538,073	+		GFF4545	0.44	-0.1
4,538,073	+		GFF4545	0.44	-1.8
4,538,073	+		GFF4545	0.44	+0.0
4,538,076	-		GFF4545	0.45	-0.6
4,538,081	-		GFF4545	0.45	-0.3
4,538,081	-		GFF4545	0.45	-2.1
4,538,081	-		GFF4545	0.45	+0.6
4,538,081	-		GFF4545	0.45	-0.9
4,538,088	-		GFF4545	0.46	+0.7
4,538,105	-		GFF4545	0.49	-0.7
4,538,106	+		GFF4545	0.49	-0.5
4,538,120	+		GFF4545	0.51	+0.7
4,538,129	+		GFF4545	0.53	-0.9
4,538,132	+		GFF4545	0.53	-1.4
4,538,161	+		GFF4545	0.57	-1.0
4,538,161	+		GFF4545	0.57	+1.4
4,538,161	+		GFF4545	0.57	-0.6
4,538,161	+		GFF4545	0.57	-1.3
4,538,162	-		GFF4545	0.58	+0.3
4,538,169	-		GFF4545	0.59	-0.8
4,538,169	-		GFF4545	0.59	-1.7
4,538,173	+		GFF4545	0.59	-0.5
4,538,173	+		GFF4545	0.59	+1.2
4,538,174	-		GFF4545	0.59	+1.5
4,538,181	-		GFF4545	0.60	+0.4
4,538,181	-		GFF4545	0.60	-1.1
4,538,183	+		GFF4545	0.61	-0.5
4,538,202	-		GFF4545	0.64	-0.6
4,538,209	+		GFF4545	0.65	-1.1
4,538,212	-		GFF4545	0.65	-1.1
4,538,231	-		GFF4545	0.68	-1.7
4,538,250	+		GFF4545	0.71	-0.8
4,538,258	-		GFF4545	0.72	+0.9
4,538,269	-		GFF4545	0.74	-1.5
4,538,283	-		GFF4545	0.76	-1.1
4,538,299	+		GFF4545	0.78	-1.0
4,538,308	+		GFF4545	0.79	-2.6
4,538,308	+		GFF4545	0.79	+0.1
4,538,313	+		GFF4545	0.80	-1.4
4,538,316	-		GFF4545	0.81	-1.6
4,538,316	-		GFF4545	0.81	+1.1
4,538,316	-		GFF4545	0.81	-0.8
4,538,333	-		GFF4545	0.83	-0.6
4,538,333	-		GFF4545	0.83	-0.8
4,538,346	+		GFF4545	0.85	-0.8
4,538,352	-		GFF4545	0.86	-1.0
4,538,352	-		GFF4545	0.86	+0.1
4,538,364	+		GFF4545	0.88	+0.5
4,538,375	+		GFF4545	0.89	+0.4
4,538,385	+				+0.2
4,538,385	+				-1.8
4,538,387	-				-0.6
4,538,390	+				-0.7
4,538,390	+				+0.0
4,538,395	+				-1.0
4,538,398	-				+0.7
4,538,403	-				-1.6
4,538,403	-				-0.6
4,538,403	-				-0.3
4,538,442	+				-1.1
4,538,455	-				-0.5
4,538,455	-				-0.1
4,538,466	+				-0.2
4,538,466	+				-1.8
4,538,469	-				+0.0
4,538,474	-				-0.8
4,538,474	-				-0.5
4,538,474	-				-1.5
4,538,578	-				-0.5
4,538,612	+				-1.6
4,538,627	+				-0.1
4,538,627	+				-1.0
4,538,627	+				-1.0
4,538,627	+				-1.1
4,538,627	+				-0.2
4,538,627	+				-0.8
4,538,627	+				-1.2
4,538,627	+				-0.2
4,538,627	+				+0.1
4,538,631	+				-0.6
4,538,635	-				+0.5
4,538,635	-				-2.3
4,538,635	-				+0.2
4,538,635	-				+0.1
4,538,635	-				-0.4
4,538,635	-				-0.9
4,538,637	+				-1.5
4,538,645	-				+0.0
4,538,662	+		GFF4546	0.11	-1.6