Strain Fitness in Sphingobium sp. HT1-2 around GFF4468

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,460,424	+		GFF4466	0.63	-0.8
4,460,424	+		GFF4466	0.63	-0.1
4,460,445	+		GFF4466	0.66	-0.6
4,460,451	+		GFF4466	0.67	-0.6
4,460,469	+		GFF4466	0.69	+1.5
4,460,477	-		GFF4466	0.70	+0.2
4,460,477	-		GFF4466	0.70	+0.7
4,460,477	-		GFF4466	0.70	-1.4
4,460,494	+		GFF4466	0.73	+1.0
4,460,502	-		GFF4466	0.74	+0.1
4,460,508	+		GFF4466	0.75	+0.7
4,460,512	-		GFF4466	0.75	+0.5
4,460,512	-		GFF4466	0.75	-1.4
4,460,523	-		GFF4466	0.77	-1.1
4,460,530	+		GFF4466	0.78	-0.8
4,460,535	+		GFF4466	0.78	-0.6
4,460,537	+		GFF4466	0.79	-1.2
4,460,538	-		GFF4466	0.79	+0.1
4,460,543	-		GFF4466	0.80	-0.4
4,460,553	-		GFF4466	0.81	-1.2
4,460,556	-		GFF4466	0.81	-1.2
4,460,590	-		GFF4466	0.86	+0.3
4,460,656	-				-1.5
4,460,684	+				-0.8
4,460,686	+				-0.8
4,460,694	-				-1.2
4,460,701	+				-0.7
4,460,701	+				+0.9
4,460,701	+				-1.3
4,460,709	-				-0.9
4,460,796	+		GFF4467	0.15	+0.0
4,460,802	-		GFF4467	0.16	-0.4
4,460,804	-		GFF4467	0.16	-0.8
4,460,837	+		GFF4467	0.21	-0.5
4,460,864	+		GFF4467	0.24	-0.8
4,460,864	+		GFF4467	0.24	-1.5
4,460,864	+		GFF4467	0.24	-2.1
4,460,864	+		GFF4467	0.24	-0.3
4,460,873	+		GFF4467	0.26	+0.9
4,460,881	-		GFF4467	0.27	-0.6
4,460,915	+		GFF4467	0.31	+0.0
4,460,919	+		GFF4467	0.32	-0.6
4,460,943	+		GFF4467	0.35	-0.0
4,460,951	-		GFF4467	0.36	+0.5
4,460,979	-		GFF4467	0.40	-1.9
4,460,990	+		GFF4467	0.42	+0.7
4,461,009	-		GFF4467	0.44	+0.2
4,461,009	-		GFF4467	0.44	+0.1
4,461,009	-		GFF4467	0.44	+0.8
4,461,009	-		GFF4467	0.44	-0.3
4,461,019	-		GFF4467	0.46	-1.6
4,461,022	+		GFF4467	0.46	-0.2
4,461,027	+		GFF4467	0.47	-1.5
4,461,045	-		GFF4467	0.49	-0.6
4,461,054	-		GFF4467	0.50	-0.5
4,461,095	-		GFF4467	0.56	+0.3
4,461,101	-		GFF4467	0.57	+1.0
4,461,105	-		GFF4467	0.57	+1.5
4,461,114	-		GFF4467	0.59	+0.2
4,461,132	+		GFF4467	0.61	-0.7
4,461,132	+		GFF4467	0.61	-0.7
4,461,137	+		GFF4467	0.62	+0.7
4,461,140	-		GFF4467	0.62	+0.1
4,461,140	-		GFF4467	0.62	-0.0
4,461,181	-		GFF4467	0.68	-0.7
4,461,181	-		GFF4467	0.68	+0.2
4,461,190	+		GFF4467	0.69	-0.4
4,461,190	+		GFF4467	0.69	+1.2
4,461,198	-		GFF4467	0.70	+0.5
4,461,198	-		GFF4467	0.70	-1.3
4,461,215	-		GFF4467	0.72	-0.7
4,461,215	-		GFF4467	0.72	+1.0
4,461,241	-		GFF4467	0.76	+0.4
4,461,254	+		GFF4467	0.78	-0.9
4,461,260	-		GFF4467	0.79	-0.6
4,461,291	+		GFF4467	0.83	+0.4
4,461,317	+		GFF4467	0.86	-0.6
4,461,340	+		GFF4467	0.90	-0.6
4,461,353	-				-0.7
4,461,418	+				-1.4
4,461,418	+				-0.2
4,461,418	+				+0.4
4,461,426	-				-0.7
4,461,440	+				-1.2
4,461,440	+				-0.0
4,461,448	-				+0.9
4,461,448	-				-0.9
4,461,448	-				+0.5
4,461,448	-				-1.9
4,461,467	+				-0.1
4,461,467	+				-0.8
4,461,467	+				-0.9
4,461,472	+				+2.0
4,461,472	+				+0.3
4,461,472	+				-0.4
4,461,472	+				+0.9
4,461,475	-				-1.2
4,461,475	-				-1.6
4,461,480	-				+0.8
4,461,480	-				+0.6
4,461,480	-				-1.2
4,461,480	-				+1.2
4,461,527	+				-0.6
4,461,535	-				-0.2
4,461,537	+				+0.9
4,461,574	+				-0.0
4,461,575	+				-0.2
4,461,582	-				-0.2
4,461,583	-				+0.8
4,461,583	-				+0.0
4,461,591	-				-0.6
4,461,593	+				-0.3
4,461,622	-		GFF4468	0.11	-0.0
4,461,638	+		GFF4468	0.12	-0.6
4,461,659	+		GFF4468	0.13	+1.2
4,461,667	-		GFF4468	0.13	-0.3
4,461,672	-		GFF4468	0.13	+1.1
4,461,673	+		GFF4468	0.14	+1.3
4,461,678	+		GFF4468	0.14	+0.3
4,461,686	-		GFF4468	0.14	+0.6
4,461,700	+		GFF4468	0.15	-1.5
4,461,704	-		GFF4468	0.15	-1.0
4,461,708	+		GFF4468	0.15	-1.9
4,461,710	-		GFF4468	0.15	+1.4
4,461,725	+		GFF4468	0.16	+1.7
4,461,725	+		GFF4468	0.16	+1.1
4,461,725	+		GFF4468	0.16	-0.8
4,461,733	-		GFF4468	0.17	-1.0
4,461,762	+		GFF4468	0.18	-2.4
4,461,782	+		GFF4468	0.19	-1.1
4,461,782	+		GFF4468	0.19	-0.2
4,461,790	-		GFF4468	0.20	-0.7
4,461,794	+		GFF4468	0.20	+1.4
4,461,794	+		GFF4468	0.20	-1.3
4,461,813	+		GFF4468	0.21	-2.1
4,461,833	+		GFF4468	0.22	-0.1
4,461,833	+		GFF4468	0.22	+1.6
4,461,833	+		GFF4468	0.22	-0.6
4,461,856	+		GFF4468	0.23	+0.7
4,461,867	-		GFF4468	0.24	-0.9
4,461,891	-		GFF4468	0.25	+0.2
4,461,891	-		GFF4468	0.25	-0.2
4,461,891	-		GFF4468	0.25	+0.4
4,461,900	+		GFF4468	0.25	-0.3
4,461,900	+		GFF4468	0.25	-1.0
4,461,921	+		GFF4468	0.26	-0.4
4,461,924	+		GFF4468	0.27	-0.0
4,461,924	+		GFF4468	0.27	+0.6
4,461,929	-		GFF4468	0.27	-0.3
4,461,934	+		GFF4468	0.27	-1.2
4,461,934	+		GFF4468	0.27	+0.8
4,461,934	+		GFF4468	0.27	-1.3
4,461,939	+		GFF4468	0.27	+0.7
4,461,942	-		GFF4468	0.28	-0.7
4,461,968	-		GFF4468	0.29	-0.9
4,461,974	+		GFF4468	0.29	+0.9
4,462,013	-		GFF4468	0.31	-1.6
4,462,041	+		GFF4468	0.33	-1.5
4,462,049	-		GFF4468	0.33	-0.1
4,462,082	+		GFF4468	0.35	-0.9
4,462,082	+		GFF4468	0.35	+0.9
4,462,082	+		GFF4468	0.35	+0.3
4,462,084	+		GFF4468	0.35	-0.8
4,462,088	+		GFF4468	0.35	-0.9
4,462,090	-		GFF4468	0.35	+0.9
4,462,090	-		GFF4468	0.35	-1.8
4,462,094	-		GFF4468	0.36	-1.0
4,462,096	+		GFF4468	0.36	-0.6
4,462,104	-		GFF4468	0.36	-0.2
4,462,104	-		GFF4468	0.36	+0.5
4,462,110	+		GFF4468	0.36	-1.3
4,462,121	+		GFF4468	0.37	-0.1
4,462,151	-		GFF4468	0.39	-0.6
4,462,163	-		GFF4468	0.39	+0.7
4,462,182	-		GFF4468	0.40	-1.0
4,462,189	-		GFF4468	0.41	-1.4
4,462,199	+		GFF4468	0.41	+0.3
4,462,223	+		GFF4468	0.42	-0.3
4,462,255	-		GFF4468	0.44	-0.9
4,462,260	-		GFF4468	0.44	+0.4
4,462,265	-		GFF4468	0.44	+0.2
4,462,278	+		GFF4468	0.45	-1.3
4,462,288	+		GFF4468	0.46	-0.7
4,462,329	+		GFF4468	0.48	+0.3
4,462,334	+		GFF4468	0.48	-1.3
4,462,342	-		GFF4468	0.49	-0.2
4,462,342	-		GFF4468	0.49	-0.7
4,462,342	-		GFF4468	0.49	-0.9
4,462,355	+		GFF4468	0.49	-1.2
4,462,355	+		GFF4468	0.49	-1.3
4,462,363	-		GFF4468	0.50	-0.1
4,462,380	+		GFF4468	0.50	-0.8
4,462,437	-		GFF4468	0.53	+1.0
4,462,437	-		GFF4468	0.53	-0.4
4,462,451	+		GFF4468	0.54	+0.6
4,462,456	+		GFF4468	0.54	-1.0
4,462,456	+		GFF4468	0.54	-0.4
4,462,461	+		GFF4468	0.55	+0.8
4,462,479	-		GFF4468	0.56	-0.5
4,462,481	+		GFF4468	0.56	+0.4
4,462,486	+		GFF4468	0.56	-1.1
4,462,486	+		GFF4468	0.56	+0.7
4,462,489	-		GFF4468	0.56	-0.7
4,462,494	-		GFF4468	0.56	-0.4
4,462,494	-		GFF4468	0.56	-0.6
4,462,494	-		GFF4468	0.56	-0.4
4,462,509	-		GFF4468	0.57	+0.2
4,462,511	-		GFF4468	0.57	-0.6
4,462,516	-		GFF4468	0.58	-0.9
4,462,531	+		GFF4468	0.58	-1.2
4,462,540	-		GFF4468	0.59	+0.9
4,462,550	-		GFF4468	0.59	-0.7
4,462,590	-		GFF4468	0.61	+0.3
4,462,591	+		GFF4468	0.62	+1.3
4,462,599	-		GFF4468	0.62	+0.3
4,462,599	-		GFF4468	0.62	-0.0
4,462,599	-		GFF4468	0.62	-1.9
4,462,601	+		GFF4468	0.62	-1.4
4,462,601	+		GFF4468	0.62	-0.0
4,462,601	+		GFF4468	0.62	+0.7
4,462,601	+		GFF4468	0.62	-0.7
4,462,601	+		GFF4468	0.62	-0.7
4,462,609	-		GFF4468	0.62	+0.4
4,462,609	-		GFF4468	0.62	+0.2
4,462,609	-		GFF4468	0.62	-1.8
4,462,609	-		GFF4468	0.62	-0.4
4,462,609	-		GFF4468	0.62	-0.3
4,462,609	-		GFF4468	0.62	+0.2
4,462,663	-		GFF4468	0.65	-0.6
4,462,700	+		GFF4468	0.67	-0.8
4,462,700	+		GFF4468	0.67	-1.0
4,462,703	-		GFF4468	0.67	-0.4
4,462,708	-		GFF4468	0.68	-1.3
4,462,710	+		GFF4468	0.68	+0.1
4,462,713	-		GFF4468	0.68	-0.0
4,462,713	-		GFF4468	0.68	-1.3
4,462,720	-		GFF4468	0.68	+1.0
4,462,742	-		GFF4468	0.69	-1.3
4,462,778	-		GFF4468	0.71	+0.1
4,462,790	+		GFF4468	0.72	+1.4
4,462,798	-		GFF4468	0.72	-0.4
4,462,798	-		GFF4468	0.72	+0.5
4,462,800	-		GFF4468	0.72	-0.2
4,462,844	-		GFF4468	0.75	-1.0
4,462,868	+		GFF4468	0.76	-1.1
4,462,868	-		GFF4468	0.76	-1.6
4,462,874	+		GFF4468	0.76	-1.1
4,462,882	-		GFF4468	0.77	+0.1
4,462,884	+		GFF4468	0.77	-0.6
4,462,924	+		GFF4468	0.79	-0.7
4,462,924	+		GFF4468	0.79	-0.9
4,462,972	-		GFF4468	0.81	-0.2
4,462,972	-		GFF4468	0.81	-0.7
4,462,975	+		GFF4468	0.82	+0.0
4,462,983	-		GFF4468	0.82	+0.2
4,462,985	+		GFF4468	0.82	+0.1
4,462,985	+		GFF4468	0.82	+0.9
4,462,985	+		GFF4468	0.82	-0.4
4,462,985	+		GFF4468	0.82	-0.3
4,462,993	-		GFF4468	0.83	-0.7
4,462,997	+		GFF4468	0.83	-0.3
4,463,001	-		GFF4468	0.83	-2.4
4,463,001	-		GFF4468	0.83	-1.2
4,463,002	+		GFF4468	0.83	-0.8
4,463,030	-		GFF4468	0.85	+0.7
4,463,058	-		GFF4468	0.86	-0.1
4,463,106	+		GFF4468	0.88	+0.5
4,463,159	+				+0.1
4,463,174	-				-0.2
4,463,183	-				-0.2
4,463,188	-				-1.3
4,463,193	-				+1.1
4,463,203	+				-0.0
4,463,223	-				-0.5
4,463,236	-				+0.3
4,463,242	-				-0.4
4,463,258	+				-0.6
4,463,268	+				-0.8
4,463,276	-				+1.5
4,463,276	-				+0.1
4,463,276	-				-0.7
4,463,287	+				-0.8
4,463,295	-				+0.2
4,463,295	-				-0.4
4,463,301	+				+0.5
4,463,301	+				+0.1
4,463,306	+				+0.6
4,463,350	+				+0.8
4,463,379	-				-0.9
4,463,392	-		GFF4469	0.13	-0.7
4,463,470	+		GFF4469	0.38	+0.5
4,463,473	-		GFF4469	0.39	-0.7
4,463,478	-		GFF4469	0.40	-0.4
4,463,494	+		GFF4469	0.45	-1.0
4,463,496	+		GFF4469	0.46	-0.7
4,463,496	+		GFF4469	0.46	-1.2
4,463,542	-		GFF4469	0.60	+0.6
4,463,556	-		GFF4469	0.64	+0.9
4,463,573	-		GFF4469	0.70	-0.6
4,463,574	+		GFF4469	0.70	+0.8
4,463,579	+		GFF4469	0.72	-0.7
4,463,661	+				+0.1
4,463,725	-				+0.1
4,463,735	-				-1.7
4,463,742	+				+0.5
4,463,750	-				-0.9
4,463,764	-		GFF4470	0.15	+1.7
4,463,797	-		GFF4470	0.30	-0.2
4,463,805	-		GFF4470	0.34	-0.7
4,463,841	-		GFF4470	0.50	+0.1
4,463,860	+		GFF4470	0.59	-1.3
4,463,868	-		GFF4470	0.62	-0.1
4,463,868	-		GFF4470	0.62	+0.2
4,463,868	-		GFF4470	0.62	+0.2
4,463,868	-		GFF4470	0.62	+0.6
4,463,868	-		GFF4470	0.62	+0.6
4,463,868	-		GFF4470	0.62	-1.6
4,463,868	-		GFF4470	0.62	-1.5
4,463,877	+		GFF4470	0.66	-0.4
4,463,878	-		GFF4470	0.67	+0.2
4,463,882	+		GFF4470	0.68	+0.6
4,463,896	-		GFF4470	0.75	-1.0
4,463,898	-		GFF4470	0.76	+0.1
4,463,902	+		GFF4470	0.77	-1.5
4,463,917	+		GFF4470	0.84	+1.0
4,463,925	-		GFF4470	0.88	+0.2
4,463,968	+				+1.4
4,463,983	-				+0.1
4,463,984	+				+1.0
4,463,992	-				-0.6
4,464,001	-		GFF4471	0.11	-1.6
4,464,014	+		GFF4471	0.14	+0.5
4,464,044	+		GFF4471	0.20	-0.6
4,464,073	-		GFF4471	0.26	-1.4
4,464,090	-		GFF4471	0.30	-1.4
4,464,156	+		GFF4471	0.43	-0.9
4,464,164	-		GFF4471	0.45	+0.1
4,464,166	+		GFF4471	0.45	+2.1
4,464,173	+		GFF4471	0.47	-1.1
4,464,183	+		GFF4471	0.49	+0.3
4,464,183	+		GFF4471	0.49	-0.0
4,464,183	+		GFF4471	0.49	-1.8
4,464,183	+		GFF4471	0.49	-1.5
4,464,185	-		GFF4471	0.49	-0.2
4,464,191	-		GFF4471	0.51	-0.3
4,464,191	-		GFF4471	0.51	+0.9
4,464,243	-		GFF4471	0.61	-0.3
4,464,246	+		GFF4471	0.62	+0.8
4,464,262	-		GFF4471	0.65	-0.0
4,464,262	-		GFF4471	0.65	+0.8
4,464,281	-		GFF4471	0.69	-0.9
4,464,281	-		GFF4471	0.69	+1.1
4,464,316	+		GFF4471	0.77	+0.3
4,464,324	-		GFF4471	0.78	-1.6