Strain Fitness in Sphingobium sp. HT1-2 around GFF4456

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,450,763	+				+0.8
4,450,763	-				-0.8
4,450,763	-				-0.2
4,450,765	+				-1.1
4,450,765	+				-0.6
4,450,773	-				-0.0
4,450,773	-				+0.6
4,450,784	+				-0.3
4,450,791	+				-0.7
4,450,797	+		GFF4455	0.10	+0.9
4,450,799	-		GFF4455	0.10	-0.9
4,450,799	-		GFF4455	0.10	+1.1
4,450,799	-		GFF4455	0.10	+0.6
4,450,799	-		GFF4455	0.10	+0.3
4,450,799	-		GFF4455	0.10	-0.5
4,450,805	-		GFF4455	0.11	-1.5
4,450,805	-		GFF4455	0.11	-0.4
4,450,805	-		GFF4455	0.11	-0.3
4,450,832	-		GFF4455	0.13	+0.3
4,450,834	+		GFF4455	0.14	-1.5
4,450,867	+		GFF4455	0.17	+1.6
4,450,867	+		GFF4455	0.17	+0.3
4,450,867	+		GFF4455	0.17	+1.4
4,450,867	+		GFF4455	0.17	+0.4
4,450,867	+		GFF4455	0.17	-1.7
4,450,867	+		GFF4455	0.17	-0.9
4,450,870	-		GFF4455	0.17	+0.5
4,450,870	-		GFF4455	0.17	+1.0
4,450,875	-		GFF4455	0.18	+1.1
4,450,875	-		GFF4455	0.18	-0.9
4,450,875	-		GFF4455	0.18	+1.5
4,450,875	-		GFF4455	0.18	-0.8
4,450,875	-		GFF4455	0.18	+0.4
4,450,875	-		GFF4455	0.18	-0.6
4,450,875	-		GFF4455	0.18	-1.3
4,450,875	-		GFF4455	0.18	+0.9
4,450,875	-		GFF4455	0.18	+0.4
4,450,875	-		GFF4455	0.18	+1.0
4,450,875	-		GFF4455	0.18	+0.7
4,450,875	-		GFF4455	0.18	-2.0
4,450,875	-		GFF4455	0.18	-1.5
4,450,875	-		GFF4455	0.18	-1.7
4,450,875	-		GFF4455	0.18	-1.5
4,450,882	+		GFF4455	0.18	+0.1
4,450,885	-		GFF4455	0.19	-0.6
4,450,885	-		GFF4455	0.19	+0.3
4,450,887	+		GFF4455	0.19	+0.1
4,450,887	+		GFF4455	0.19	+1.1
4,450,895	-		GFF4455	0.20	+0.2
4,450,896	+		GFF4455	0.20	-1.7
4,450,897	-		GFF4455	0.20	-1.9
4,450,944	-		GFF4455	0.24	-1.0
4,450,949	+		GFF4455	0.25	+2.1
4,450,949	+		GFF4455	0.25	-1.5
4,450,957	-		GFF4455	0.26	+0.4
4,450,957	-		GFF4455	0.26	+1.1
4,450,957	-		GFF4455	0.26	-0.1
4,450,990	+		GFF4455	0.29	-0.9
4,450,993	-		GFF4455	0.29	-0.2
4,450,998	-		GFF4455	0.30	+0.1
4,451,003	-		GFF4455	0.30	+0.3
4,451,033	+		GFF4455	0.33	-1.5
4,451,043	+		GFF4455	0.34	-0.2
4,451,050	+		GFF4455	0.35	-1.0
4,451,051	-		GFF4455	0.35	-1.2
4,451,051	-		GFF4455	0.35	+1.5
4,451,051	-		GFF4455	0.35	-0.5
4,451,058	-		GFF4455	0.35	-0.9
4,451,071	+		GFF4455	0.37	-1.2
4,451,071	+		GFF4455	0.37	-0.6
4,451,077	+		GFF4455	0.37	+0.2
4,451,077	+		GFF4455	0.37	+1.5
4,451,089	+		GFF4455	0.38	-0.7
4,451,090	-		GFF4455	0.39	-0.8
4,451,092	+		GFF4455	0.39	-1.5
4,451,124	-		GFF4455	0.42	-1.1
4,451,136	+		GFF4455	0.43	-0.5
4,451,145	+		GFF4455	0.44	-1.7
4,451,145	-		GFF4455	0.44	+0.4
4,451,177	-		GFF4455	0.47	-1.3
4,451,200	+		GFF4455	0.49	-1.0
4,451,206	+		GFF4455	0.50	-0.2
4,451,232	-		GFF4455	0.52	+0.4
4,451,234	+		GFF4455	0.53	-1.0
4,451,242	-		GFF4455	0.53	-0.6
4,451,242	-		GFF4455	0.53	+0.3
4,451,243	+		GFF4455	0.54	+0.6
4,451,243	+		GFF4455	0.54	+0.8
4,451,249	-		GFF4455	0.54	+0.3
4,451,283	-		GFF4455	0.57	-1.9
4,451,283	-		GFF4455	0.57	-0.5
4,451,308	-		GFF4455	0.60	-0.3
4,451,373	+		GFF4455	0.66	-1.5
4,451,383	-		GFF4455	0.67	+0.6
4,451,383	-		GFF4455	0.67	-1.7
4,451,391	-		GFF4455	0.68	+0.6
4,451,391	-		GFF4455	0.68	-0.1
4,451,395	+		GFF4455	0.68	+0.6
4,451,415	-		GFF4455	0.70	-1.0
4,451,428	+		GFF4455	0.72	-1.2
4,451,435	+		GFF4455	0.72	-0.0
4,451,439	+		GFF4455	0.73	-1.3
4,451,439	+		GFF4455	0.73	+0.6
4,451,439	+		GFF4455	0.73	-1.2
4,451,439	+		GFF4455	0.73	-1.1
4,451,439	+		GFF4455	0.73	-1.3
4,451,447	-		GFF4455	0.73	-0.2
4,451,447	-		GFF4455	0.73	+0.6
4,451,447	-		GFF4455	0.73	+0.2
4,451,447	-		GFF4455	0.73	+0.2
4,451,447	-		GFF4455	0.73	-0.1
4,451,447	-		GFF4455	0.73	-0.9
4,451,447	-		GFF4455	0.73	+0.6
4,451,450	+		GFF4455	0.74	+0.9
4,451,462	-		GFF4455	0.75	+1.0
4,451,477	+		GFF4455	0.76	+0.2
4,451,483	+		GFF4455	0.77	-0.5
4,451,518	-		GFF4455	0.80	-0.1
4,451,557	-		GFF4455	0.84	+0.1
4,451,564	+		GFF4455	0.85	-0.7
4,451,569	+		GFF4455	0.85	+0.9
4,451,575	-		GFF4455	0.86	-1.0
4,451,584	+		GFF4455	0.87	-1.0
4,451,587	-		GFF4455	0.87	+0.6
4,451,589	+		GFF4455	0.87	-2.0
4,451,589	+		GFF4455	0.87	-0.3
4,451,592	-		GFF4455	0.88	+0.6
4,451,592	-		GFF4455	0.88	-0.8
4,451,597	-		GFF4455	0.88	+0.2
4,451,597	-		GFF4455	0.88	-0.3
4,451,608	+		GFF4455	0.89	-1.1
4,451,618	+				+0.2
4,451,621	-				+0.8
4,451,621	-				-0.1
4,451,624	+				+1.3
4,451,629	+				+0.1
4,451,629	+				-1.3
4,451,629	+				+0.5
4,451,632	-				-0.1
4,451,637	-				-0.9
4,451,637	-				-0.5
4,451,637	-				-1.3
4,451,637	-				-1.1
4,451,643	+				-0.5
4,451,667	+				+0.3
4,451,701	+				-2.1
4,451,702	-				+0.8
4,451,744	+				+0.1
4,451,744	+				+0.2
4,451,744	+				-0.6
4,451,744	+				+0.5
4,451,752	-				-1.3
4,451,752	-				-1.3
4,451,752	-				-2.0
4,451,769	+				-0.8
4,451,769	+				-0.4
4,451,769	+				-0.1
4,451,777	-				-1.0
4,451,829	+				-0.9
4,451,836	+				-1.1
4,451,850	-				+1.0
4,451,850	-				-0.2
4,451,862	-				+0.9
4,451,881	+				+1.4
4,451,881	+				-0.8
4,451,881	+				+0.5
4,451,881	+				-0.5
4,451,886	+				-0.8
4,451,886	+				-0.9
4,451,886	+				+2.1
4,451,888	+				-1.1
4,451,889	-				-0.0
4,451,889	-				-1.4
4,451,889	-				-0.8
4,451,889	-				+0.2
4,451,899	+		GFF4456	0.10	-1.0
4,451,900	+		GFF4456	0.10	-0.5
4,451,900	+		GFF4456	0.10	+0.2
4,451,900	+		GFF4456	0.10	-0.3
4,451,900	+		GFF4456	0.10	-1.5
4,451,900	+		GFF4456	0.10	+1.0
4,451,900	+		GFF4456	0.10	-0.4
4,451,900	+		GFF4456	0.10	+0.3
4,451,900	+		GFF4456	0.10	+1.4
4,451,908	-		GFF4456	0.11	+0.1
4,451,908	-		GFF4456	0.11	-0.1
4,451,908	-		GFF4456	0.11	-1.0
4,451,918	-		GFF4456	0.11	-1.0
4,451,918	-		GFF4456	0.11	-1.1
4,451,937	+		GFF4456	0.13	-1.3
4,451,941	-		GFF4456	0.13	-0.5
4,451,966	-		GFF4456	0.14	-0.3
4,451,973	+		GFF4456	0.15	-0.2
4,451,981	-		GFF4456	0.15	-0.5
4,451,981	-		GFF4456	0.15	-0.1
4,451,981	-		GFF4456	0.15	-0.6
4,451,992	+		GFF4456	0.16	+0.3
4,452,031	-		GFF4456	0.19	-1.8
4,452,043	-		GFF4456	0.20	-1.2
4,452,045	+		GFF4456	0.20	-0.9
4,452,058	+		GFF4456	0.21	+0.5
4,452,073	+		GFF4456	0.21	+0.1
4,452,082	-		GFF4456	0.22	-0.6
4,452,085	+		GFF4456	0.22	-0.6
4,452,085	+		GFF4456	0.22	-0.7
4,452,085	+		GFF4456	0.22	-0.7
4,452,093	-		GFF4456	0.23	-0.4
4,452,093	-		GFF4456	0.23	-0.6
4,452,116	+		GFF4456	0.24	+0.5
4,452,116	+		GFF4456	0.24	-0.5
4,452,116	+		GFF4456	0.24	-0.6
4,452,116	+		GFF4456	0.24	-1.1
4,452,116	+		GFF4456	0.24	-1.5
4,452,116	+		GFF4456	0.24	-1.3
4,452,124	-		GFF4456	0.25	+0.4
4,452,124	-		GFF4456	0.25	-0.3
4,452,124	-		GFF4456	0.25	-0.9
4,452,124	-		GFF4456	0.25	+1.1
4,452,137	+		GFF4456	0.26	-1.4
4,452,164	+		GFF4456	0.27	-1.3
4,452,164	+		GFF4456	0.27	-1.5
4,452,164	+		GFF4456	0.27	-0.2
4,452,164	+		GFF4456	0.27	-1.0
4,452,164	+		GFF4456	0.27	-1.7
4,452,164	+		GFF4456	0.27	-0.9
4,452,165	+		GFF4456	0.28	+0.2
4,452,170	-		GFF4456	0.28	-0.5
4,452,172	-		GFF4456	0.28	+1.0
4,452,179	+		GFF4456	0.28	-1.5
4,452,187	-		GFF4456	0.29	-0.9
4,452,187	-		GFF4456	0.29	-0.8
4,452,187	-		GFF4456	0.29	-0.8
4,452,187	-		GFF4456	0.29	-0.6
4,452,205	+		GFF4456	0.30	-0.2
4,452,213	-		GFF4456	0.31	+1.0
4,452,213	-		GFF4456	0.31	+0.2
4,452,220	+		GFF4456	0.31	-1.6
4,452,223	-		GFF4456	0.31	-0.3
4,452,228	+		GFF4456	0.32	+0.9
4,452,230	+		GFF4456	0.32	-0.1
4,452,238	-		GFF4456	0.32	-1.7
4,452,247	+		GFF4456	0.33	-0.7
4,452,250	-		GFF4456	0.33	-0.7
4,452,269	+		GFF4456	0.34	-0.7
4,452,282	-		GFF4456	0.35	+0.6
4,452,301	-		GFF4456	0.36	-0.6
4,452,334	-		GFF4456	0.39	-0.0
4,452,361	+		GFF4456	0.40	+1.4
4,452,361	+		GFF4456	0.40	-1.0
4,452,361	+		GFF4456	0.40	-1.6
4,452,361	+		GFF4456	0.40	-1.8
4,452,361	+		GFF4456	0.40	+1.1
4,452,361	+		GFF4456	0.40	+0.8
4,452,361	+		GFF4456	0.40	+0.3
4,452,361	+		GFF4456	0.40	+0.2
4,452,362	+		GFF4456	0.40	+0.4
4,452,362	+		GFF4456	0.40	+1.0
4,452,362	+		GFF4456	0.40	+0.4
4,452,362	+		GFF4456	0.40	+0.2
4,452,362	+		GFF4456	0.40	-0.5
4,452,365	-		GFF4456	0.41	+1.3
4,452,365	-		GFF4456	0.41	+0.5
4,452,365	-		GFF4456	0.41	-0.1
4,452,369	-		GFF4456	0.41	+0.3
4,452,369	-		GFF4456	0.41	-1.1
4,452,369	-		GFF4456	0.41	+1.8
4,452,369	-		GFF4456	0.41	+0.4
4,452,369	-		GFF4456	0.41	+0.1
4,452,369	-		GFF4456	0.41	+0.2
4,452,370	-		GFF4456	0.41	-1.1
4,452,370	-		GFF4456	0.41	+1.3
4,452,379	+		GFF4456	0.42	+0.1
4,452,393	+		GFF4456	0.43	+0.1
4,452,401	-		GFF4456	0.43	-0.8
4,452,408	-		GFF4456	0.44	+0.0
4,452,421	+		GFF4456	0.44	-1.5
4,452,443	-		GFF4456	0.46	-1.4
4,452,471	-		GFF4456	0.48	+0.2
4,452,480	+		GFF4456	0.48	+0.5
4,452,504	-		GFF4456	0.50	-0.7
4,452,505	-		GFF4456	0.50	-0.5
4,452,551	+		GFF4456	0.53	+0.6
4,452,559	+		GFF4456	0.53	-0.7
4,452,562	-		GFF4456	0.54	-1.3
4,452,594	+		GFF4456	0.56	-1.5
4,452,594	+		GFF4456	0.56	+0.5
4,452,602	-		GFF4456	0.56	+1.1
4,452,606	+		GFF4456	0.57	+0.3
4,452,623	+		GFF4456	0.58	+0.9
4,452,624	-		GFF4456	0.58	-0.6
4,452,648	+		GFF4456	0.59	-0.2
4,452,650	-		GFF4456	0.59	-0.7
4,452,672	+		GFF4456	0.61	-1.5
4,452,678	-		GFF4456	0.61	-0.9
4,452,679	+		GFF4456	0.61	+0.3
4,452,679	+		GFF4456	0.61	-1.1
4,452,679	+		GFF4456	0.61	+0.3
4,452,679	+		GFF4456	0.61	+1.0
4,452,709	-		GFF4456	0.63	-1.2
4,452,745	+		GFF4456	0.66	-1.0
4,452,753	-		GFF4456	0.66	+1.0
4,452,763	-		GFF4456	0.67	+0.7
4,452,763	-		GFF4456	0.67	-0.4
4,452,763	-		GFF4456	0.67	-0.4
4,452,763	-		GFF4456	0.67	-0.0
4,452,763	-		GFF4456	0.67	+0.3
4,452,772	+		GFF4456	0.67	-0.8
4,452,788	-		GFF4456	0.69	+1.1
4,452,797	+		GFF4456	0.69	-0.8
4,452,866	+		GFF4456	0.74	-0.7
4,452,978	+		GFF4456	0.81	-0.9
4,452,978	+		GFF4456	0.81	-0.3
4,452,986	-		GFF4456	0.82	-0.7
4,452,986	-		GFF4456	0.82	-1.3
4,453,019	+		GFF4456	0.84	-0.9
4,453,060	-		GFF4456	0.86	-0.6
4,453,136	+				-0.0
4,453,136	+				-0.9
4,453,141	+				-0.7
4,453,179	-				+1.4
4,453,218	+				-1.5
4,453,226	-				+1.2
4,453,226	-				+0.1
4,453,235	+				-0.8
4,453,262	+				-0.3
4,453,266	-				+0.1
4,453,367	-				-1.0
4,453,369	+				-2.0
4,453,375	+				+1.0
4,453,377	-				-0.7
4,453,532	+				-0.1
4,453,533	+				+0.8
4,453,533	+				+0.2
4,453,535	-				+0.2
4,453,588	+		GFF4457	0.21	+0.5
4,453,596	-		GFF4457	0.24	+0.5
4,453,596	-		GFF4457	0.24	+0.3
4,453,596	-		GFF4457	0.24	-0.4
4,453,623	-		GFF4457	0.32	-1.0
4,453,623	-		GFF4457	0.32	-0.2
4,453,627	-		GFF4457	0.33	+2.0
4,453,696	+		GFF4457	0.54	+0.8
4,453,696	+		GFF4457	0.54	+0.1
4,453,698	-		GFF4457	0.55	+1.3
4,453,700	+		GFF4457	0.55	+0.5
4,453,704	-		GFF4457	0.56	-0.7
4,453,704	-		GFF4457	0.56	+1.0
4,453,708	-		GFF4457	0.58	+0.1
4,453,708	-		GFF4457	0.58	-0.6
4,453,720	-		GFF4457	0.61	-0.6
4,453,723	+		GFF4457	0.62	+0.9
4,453,767	+		GFF4457	0.75	-0.9
4,453,768	+		GFF4457	0.76	-0.1
4,453,768	+		GFF4457	0.76	-0.2
4,453,774	-		GFF4457	0.78	-1.7
4,453,776	-		GFF4457	0.78	+0.8
4,453,776	-		GFF4457	0.78	+0.3
4,453,776	-		GFF4457	0.78	-0.7
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4,453,776	-		GFF4457	0.78	-3.1
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4,453,776	-		GFF4457	0.78	-1.1
4,453,812	+		GFF4457	0.89	-0.0
4,453,812	+		GFF4457	0.89	-1.0
4,453,817	+				-1.2
4,453,857	-				+0.8
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4,453,873	-				-0.9
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4,453,971	-				-1.0
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