Strain Fitness in Sphingobium sp. HT1-2 around GFF4445

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,438,930	+				-1.3
4,438,935	+				-0.1
4,438,936	-				-0.1
4,438,936	-				+0.6
4,438,937	-				-0.7
4,438,938	-				+1.0
4,438,943	-				-0.8
4,438,943	-				-1.4
4,438,948	+				+0.5
4,438,958	+				-0.9
4,438,966	-				-0.9
4,438,966	-				-1.0
4,438,966	-				-0.7
4,438,983	-				-0.1
4,439,032	+				+0.5
4,439,034	+				-0.6
4,439,034	+				+0.3
4,439,042	-				+0.5
4,439,044	+				-1.9
4,439,044	+				-0.9
4,439,140	-		GFF4444	0.17	-0.8
4,439,140	-		GFF4444	0.17	+0.7
4,439,175	+		GFF4444	0.21	-1.5
4,439,207	-		GFF4444	0.25	+1.0
4,439,207	-		GFF4444	0.25	-0.2
4,439,269	-		GFF4444	0.32	-0.8
4,439,293	-		GFF4444	0.35	-1.0
4,439,301	+		GFF4444	0.36	+0.3
4,439,321	-		GFF4444	0.39	-1.9
4,439,323	+		GFF4444	0.39	+0.0
4,439,323	+		GFF4444	0.39	-1.1
4,439,331	+		GFF4444	0.40	-0.6
4,439,331	-		GFF4444	0.40	-1.6
4,439,332	+		GFF4444	0.40	-0.6
4,439,332	-		GFF4444	0.40	-2.0
4,439,340	-		GFF4444	0.41	-0.9
4,439,340	-		GFF4444	0.41	-0.9
4,439,340	-		GFF4444	0.41	+1.1
4,439,340	-		GFF4444	0.41	-0.1
4,439,374	-		GFF4444	0.45	-1.1
4,439,374	-		GFF4444	0.45	+0.2
4,439,389	+		GFF4444	0.47	-0.2
4,439,414	+		GFF4444	0.50	+0.4
4,439,414	+		GFF4444	0.50	+0.4
4,439,430	-		GFF4444	0.52	-0.7
4,439,454	+		GFF4444	0.55	-0.4
4,439,476	+		GFF4444	0.57	+0.1
4,439,476	+		GFF4444	0.57	-1.1
4,439,483	+		GFF4444	0.58	+0.2
4,439,484	-		GFF4444	0.58	+0.1
4,439,493	+		GFF4444	0.59	+0.0
4,439,525	-		GFF4444	0.63	+0.1
4,439,549	-		GFF4444	0.66	+0.0
4,439,599	-		GFF4444	0.72	-0.9
4,439,607	+		GFF4444	0.73	+0.1
4,439,615	-		GFF4444	0.74	+0.2
4,439,616	+		GFF4444	0.74	+0.2
4,439,635	-		GFF4444	0.76	-0.6
4,439,635	-		GFF4444	0.76	+1.4
4,439,663	+		GFF4444	0.80	-0.8
4,439,679	-		GFF4444	0.82	-1.0
4,439,710	+		GFF4444	0.85	+0.5
4,439,718	-		GFF4444	0.86	-0.9
4,439,718	-		GFF4444	0.86	-0.2
4,439,725	-		GFF4444	0.87	+0.8
4,439,739	+		GFF4444	0.89	-0.8
4,439,740	+		GFF4444	0.89	-0.6
4,439,777	-				+0.7
4,439,787	-				-1.0
4,439,787	-				-0.6
4,439,886	+				-0.6
4,439,887	+				-0.8
4,439,887	+				-0.5
4,439,888	-				-0.3
4,439,895	-				-0.5
4,439,922	+				+0.4
4,439,922	+				-1.1
4,439,927	+				-0.6
4,439,930	-				+0.2
4,439,932	-				+0.1
4,439,935	-				+0.4
4,439,935	-				-1.5
4,439,945	+				-1.5
4,439,955	-				+2.0
4,439,960	+		GFF4445	0.11	-0.6
4,439,968	-		GFF4445	0.12	-1.7
4,439,978	+		GFF4445	0.14	-0.7
4,440,016	+		GFF4445	0.20	+0.4
4,440,024	-		GFF4445	0.22	+0.6
4,440,040	+		GFF4445	0.25	+1.0
4,440,040	+		GFF4445	0.25	-0.1
4,440,040	+		GFF4445	0.25	-0.8
4,440,040	+		GFF4445	0.25	+0.4
4,440,040	+		GFF4445	0.25	+0.2
4,440,041	-		GFF4445	0.25	+0.4
4,440,048	-		GFF4445	0.26	-1.0
4,440,048	-		GFF4445	0.26	+0.9
4,440,049	-		GFF4445	0.26	-0.5
4,440,073	+		GFF4445	0.31	-1.5
4,440,073	+		GFF4445	0.31	-0.3
4,440,081	-		GFF4445	0.32	+0.3
4,440,103	-		GFF4445	0.36	+0.2
4,440,110	+		GFF4445	0.37	+0.1
4,440,145	+		GFF4445	0.43	-0.6
4,440,145	+		GFF4445	0.43	-0.1
4,440,147	-		GFF4445	0.44	-0.1
4,440,153	-		GFF4445	0.45	+0.7
4,440,155	-		GFF4445	0.45	-0.4
4,440,162	+		GFF4445	0.46	+1.4
4,440,162	+		GFF4445	0.46	-0.7
4,440,162	+		GFF4445	0.46	+1.9
4,440,162	+		GFF4445	0.46	-1.0
4,440,170	-		GFF4445	0.48	-0.8
4,440,170	-		GFF4445	0.48	+0.2
4,440,170	-		GFF4445	0.48	+0.2
4,440,170	-		GFF4445	0.48	-0.8
4,440,191	+		GFF4445	0.51	-0.7
4,440,200	-		GFF4445	0.53	-0.7
4,440,208	-		GFF4445	0.54	-0.3
4,440,215	+		GFF4445	0.56	-1.1
4,440,217	+		GFF4445	0.56	+0.2
4,440,223	-		GFF4445	0.57	-0.9
4,440,236	+		GFF4445	0.59	-1.7
4,440,244	-		GFF4445	0.61	+0.1
4,440,244	-		GFF4445	0.61	+0.9
4,440,245	+		GFF4445	0.61	-0.8
4,440,260	+		GFF4445	0.63	-0.6
4,440,266	-		GFF4445	0.65	+0.6
4,440,278	-		GFF4445	0.67	-0.6
4,440,285	+		GFF4445	0.68	-2.3
4,440,325	-		GFF4445	0.75	-0.1
4,440,334	+		GFF4445	0.77	-0.3
4,440,342	-		GFF4445	0.78	+0.4
4,440,342	-		GFF4445	0.78	+1.3
4,440,360	+		GFF4445	0.81	+1.0
4,440,360	+		GFF4445	0.81	+0.9
4,440,370	+		GFF4445	0.83	-0.2
4,440,370	+		GFF4445	0.83	+1.6
4,440,373	-		GFF4445	0.83	-0.0
4,440,378	-		GFF4445	0.84	-1.4
4,440,378	-		GFF4445	0.84	-0.6
4,440,378	-		GFF4445	0.84	+0.2
4,440,382	+		GFF4445	0.85	-1.0
4,440,382	+		GFF4445	0.85	-0.8
4,440,390	-		GFF4445	0.86	-0.6
4,440,404	+		GFF4445	0.89	-0.4
4,440,404	+		GFF4445	0.89	+0.9
4,440,404	+		GFF4445	0.89	-1.9
4,440,412	-				+0.4
4,440,443	+				-0.8
4,440,459	+				-0.4
4,440,465	-				+1.0
4,440,469	-				+1.1
4,440,483	+				-0.5
4,440,483	+				-0.7
4,440,508	-				-0.6
4,440,508	-				-0.6
4,440,530	+				+0.6
4,440,530	+				+0.9
4,440,530	+				+0.1
4,440,535	+				-1.8
4,440,538	-				+0.4
4,440,540	+				+1.3
4,440,543	-				-1.2
4,440,560	-				-0.5
4,440,562	+				+0.4
4,440,563	+				+0.7
4,440,597	-				+0.2
4,440,607	+				+0.1
4,440,607	+				-0.6
4,440,607	+				+1.8
4,440,654	+				-0.7
4,440,666	-				-0.5
4,440,666	-				-1.6
4,440,683	-				-1.5
4,440,760	+				+0.1
4,440,783	-				-1.5
4,440,854	-				+0.6
4,440,854	-				-0.6
4,440,854	-				-0.6
4,440,857	+				+1.2
4,440,875	-				+1.9
4,440,875	-				-0.8
4,440,946	-				-3.0
4,440,972	-				+0.4
4,440,976	-				+0.6
4,441,050	+				-1.0
4,441,058	+				+0.7
4,441,058	-				-1.0
4,441,065	-				+0.4
4,441,179	+				-0.0
4,441,187	-				+0.3
4,441,196	-				-1.3
4,441,196	-				+0.4
4,441,201	+				-0.7
4,441,204	-				-1.1
4,441,209	-				-0.8
4,441,215	+				+0.1
4,441,223	-				-1.1
4,441,223	-				+0.3
4,441,223	-				-0.5
4,441,233	-				+0.9
4,441,270	+				-1.4
4,441,270	+				+1.0
4,441,270	+				+0.5
4,441,270	+				-0.5
4,441,278	-				+1.1
4,441,278	-				-1.3
4,441,278	-				-0.9
4,441,315	-				+0.4
4,441,356	+				-0.8
4,441,361	+				+0.4
4,441,364	-				-0.3
4,441,366	+				-0.7
4,441,371	+				+0.4
4,441,371	+				-1.4
4,441,371	+				-0.6
4,441,371	+				-1.2
4,441,371	+				-1.2
4,441,371	+				-0.9
4,441,371	+				-0.1
4,441,371	+				-0.8
4,441,379	-				-0.2
4,441,379	-				+0.3
4,441,379	-				-0.3
4,441,379	-				-1.2
4,441,379	-				-1.4
4,441,379	-				-1.1
4,441,383	+				-0.7
4,441,390	+				-2.3
4,441,390	+				-0.9
4,441,398	-				-0.3
4,441,398	-				-0.2
4,441,403	-				-0.7
4,441,403	-				-0.8
4,441,403	-				+1.5