Strain Fitness in Sphingobium sp. HT1-2 around GFF4295

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,302,170	-		GFF4292	0.45	-1.8
4,302,175	+		GFF4292	0.45	-1.2
4,302,176	+		GFF4292	0.46	-1.4
4,302,176	+		GFF4292	0.46	-0.2
4,302,181	+		GFF4292	0.46	+0.7
4,302,184	-		GFF4292	0.47	-1.8
4,302,184	-		GFF4292	0.47	-1.1
4,302,185	+		GFF4292	0.47	+1.4
4,302,199	+		GFF4292	0.49	+0.5
4,302,206	+		GFF4292	0.51	-1.9
4,302,206	+		GFF4292	0.51	+1.2
4,302,206	+		GFF4292	0.51	-0.9
4,302,214	-		GFF4292	0.52	+0.1
4,302,214	-		GFF4292	0.52	-0.3
4,302,216	+		GFF4292	0.52	-0.4
4,302,224	-		GFF4292	0.54	-1.7
4,302,224	-		GFF4292	0.54	-1.1
4,302,224	-		GFF4292	0.54	+0.5
4,302,224	-		GFF4292	0.54	+1.2
4,302,224	-		GFF4292	0.54	+0.0
4,302,224	-		GFF4292	0.54	-0.4
4,302,224	-		GFF4292	0.54	-1.4
4,302,236	+		GFF4292	0.56	-0.2
4,302,253	-		GFF4292	0.59	-0.0
4,302,258	+		GFF4292	0.60	+0.9
4,302,262	+		GFF4292	0.60	+1.3
4,302,271	-		GFF4292	0.62	+0.0
4,302,289	-		GFF4292	0.65	-0.9
4,302,315	+		GFF4292	0.69	-1.2
4,302,323	-		GFF4292	0.71	-1.0
4,302,323	-		GFF4292	0.71	-0.7
4,302,323	-		GFF4292	0.71	-1.2
4,302,323	-		GFF4292	0.71	-0.2
4,302,325	-		GFF4292	0.71	-0.7
4,302,342	+		GFF4292	0.74	-0.5
4,302,342	+		GFF4292	0.74	-0.9
4,302,343	-		GFF4292	0.74	-0.2
4,302,343	-		GFF4292	0.74	-0.1
4,302,350	-		GFF4292	0.75	-1.8
4,302,350	-		GFF4292	0.75	-0.8
4,302,350	-		GFF4292	0.75	-0.0
4,302,355	+		GFF4292	0.76	-1.7
4,302,363	-		GFF4292	0.78	+0.5
4,302,374	+		GFF4292	0.80	-1.2
4,302,387	+		GFF4292	0.82	+0.4
4,302,424	-		GFF4292	0.88	-0.7
4,302,424	-		GFF4292	0.88	-1.8
4,302,441	-				-0.0
4,302,441	-				-0.7
4,302,443	+				+0.1
4,302,447	-				+0.1
4,302,453	-				-0.4
4,302,456	+				+0.1
4,302,464	-				-0.7
4,302,464	-				-0.4
4,302,464	-				-1.8
4,302,471	+				-1.9
4,302,471	+				-0.1
4,302,474	+				-1.3
4,302,479	+				-0.4
4,302,479	+				+0.0
4,302,479	+				-1.8
4,302,479	+				-1.8
4,302,479	+				-0.4
4,302,479	+				-1.3
4,302,482	-				-0.9
4,302,487	-				-0.5
4,302,487	-				-0.3
4,302,534	+				+0.7
4,302,534	+				-0.9
4,302,536	-				+1.3
4,302,544	-				+0.5
4,302,560	-				-0.1
4,302,567	+				-0.7
4,302,568	+				-1.5
4,302,576	-				+1.1
4,302,578	+				+0.3
4,302,578	+				-1.0
4,302,586	-				+0.9
4,302,586	-				-0.9
4,302,596	+				-0.9
4,302,596	+				-0.3
4,302,596	-				-0.3
4,302,598	+				-1.5
4,302,604	-				-0.9
4,302,604	-				+1.3
4,302,606	-				-0.5
4,302,610	+				+0.3
4,302,613	-				-1.4
4,302,613	-				-0.9
4,302,618	+		GFF4293	0.10	+0.2
4,302,634	-		GFF4293	0.18	-1.5
4,302,707	+		GFF4293	0.50	+0.4
4,302,715	+		GFF4293	0.54	-1.3
4,302,722	+		GFF4293	0.57	-1.3
4,302,735	-		GFF4293	0.63	-2.0
4,302,775	+		GFF4293	0.81	-0.6
4,302,777	+		GFF4293	0.82	+0.1
4,302,777	+		GFF4293	0.82	+1.3
4,302,784	+		GFF4293	0.85	+0.2
4,302,794	+				-1.9
4,302,794	+				-1.3
4,302,802	-				+2.3
4,302,808	-				-2.2
4,302,827	-				-1.2
4,302,829	+				-0.1
4,302,849	+		GFF4294	0.10	-0.3
4,302,849	+		GFF4294	0.10	-0.3
4,302,857	-		GFF4294	0.13	-0.8
4,302,863	+		GFF4294	0.15	-0.7
4,302,871	-		GFF4294	0.18	-0.5
4,302,884	+		GFF4294	0.22	-0.2
4,302,927	-		GFF4294	0.38	-1.0
4,302,940	-		GFF4294	0.42	+0.3
4,302,944	+		GFF4294	0.44	-0.9
4,302,944	+		GFF4294	0.44	+0.5
4,302,944	+		GFF4294	0.44	-1.8
4,302,945	-		GFF4294	0.44	-1.1
4,302,952	-		GFF4294	0.46	-0.7
4,302,952	-		GFF4294	0.46	-1.1
4,302,952	-		GFF4294	0.46	-0.6
4,302,962	-		GFF4294	0.50	-0.1
4,302,975	-		GFF4294	0.54	+1.2
4,302,977	+		GFF4294	0.55	-1.7
4,302,983	+		GFF4294	0.57	-0.1
4,302,983	+		GFF4294	0.57	-1.3
4,302,991	-		GFF4294	0.60	-1.4
4,302,996	+		GFF4294	0.62	+0.1
4,303,000	+		GFF4294	0.63	-0.2
4,303,000	+		GFF4294	0.63	-1.0
4,303,008	-		GFF4294	0.66	-0.5
4,303,062	-		GFF4294	0.85	+0.9
4,303,074	-		GFF4294	0.89	-1.9
4,303,090	+				-0.5
4,303,106	+				-1.3
4,303,106	+				-0.3
4,303,106	+				-0.1
4,303,106	+				-0.3
4,303,106	+				-0.9
4,303,106	+				-1.0
4,303,106	+				-0.3
4,303,106	+				+0.3
4,303,106	+				+0.3
4,303,106	+				-1.5
4,303,106	+				-1.2
4,303,106	+				+0.5
4,303,108	-				+0.7
4,303,114	-				+0.5
4,303,114	-				-1.3
4,303,114	-				-0.9
4,303,114	-				-0.8
4,303,114	-				+0.7
4,303,114	-				-1.3
4,303,114	-				-0.5
4,303,114	-				+0.6
4,303,114	-				-0.5
4,303,114	-				-0.5
4,303,114	-				-0.9
4,303,114	-				-1.7
4,303,114	-				+1.7
4,303,114	-				+0.2
4,303,114	-				-0.8
4,303,119	+				+0.3
4,303,121	-				+0.1
4,303,123	+				-2.2
4,303,124	+				-0.5
4,303,131	+				-0.5
4,303,137	+				-0.5
4,303,139	-				-1.2
4,303,139	-				-1.3
4,303,147	+				-0.5
4,303,147	+				-1.2
4,303,147	+				+0.8
4,303,147	+				-0.6
4,303,148	+				+0.9
4,303,155	+				-0.5
4,303,155	-				-0.0
4,303,155	-				-1.1
4,303,155	-				+2.0
4,303,155	-				+0.2
4,303,155	-				-1.3
4,303,155	-				-2.7
4,303,156	-				-1.0
4,303,156	-				-1.1
4,303,160	+				-0.1
4,303,160	+				+0.9
4,303,168	-				-1.7
4,303,168	-				+0.2
4,303,168	-				+0.2
4,303,168	-				+0.5
4,303,168	-				-1.5
4,303,168	-				-0.8
4,303,168	-				-0.9
4,303,168	-				+0.5
4,303,172	+				+0.1
4,303,172	+				-1.2
4,303,172	+				-1.3
4,303,173	-				-1.5
4,303,209	+				+0.4
4,303,209	+				+0.1
4,303,212	-		GFF4295	0.10	-0.5
4,303,213	-		GFF4295	0.10	-1.3
4,303,217	-		GFF4295	0.11	-0.5
4,303,237	+		GFF4295	0.14	-0.1
4,303,251	+		GFF4295	0.16	-2.3
4,303,257	+		GFF4295	0.17	-1.0
4,303,257	+		GFF4295	0.17	-0.7
4,303,259	-		GFF4295	0.18	-0.9
4,303,262	+		GFF4295	0.18	-0.6
4,303,265	-		GFF4295	0.19	-0.5
4,303,265	-		GFF4295	0.19	-1.1
4,303,265	-		GFF4295	0.19	+0.4
4,303,274	-		GFF4295	0.20	+0.8
4,303,281	+		GFF4295	0.21	-3.4
4,303,286	+		GFF4295	0.22	-0.9
4,303,286	+		GFF4295	0.22	+0.3
4,303,286	+		GFF4295	0.22	-2.0
4,303,296	+		GFF4295	0.24	+0.1
4,303,318	+		GFF4295	0.27	-0.8
4,303,328	-		GFF4295	0.29	+0.4
4,303,336	+		GFF4295	0.30	+1.5
4,303,336	+		GFF4295	0.30	-1.9
4,303,336	+		GFF4295	0.30	-2.1
4,303,337	+		GFF4295	0.30	+1.4
4,303,337	+		GFF4295	0.30	-0.1
4,303,344	-		GFF4295	0.31	-2.1
4,303,345	-		GFF4295	0.31	-0.3
4,303,345	-		GFF4295	0.31	+0.4
4,303,351	-		GFF4295	0.32	+0.1
4,303,351	-		GFF4295	0.32	-0.3
4,303,377	-		GFF4295	0.37	+0.5
4,303,409	+		GFF4295	0.42	+0.4
4,303,478	+		GFF4295	0.53	-0.4
4,303,482	+		GFF4295	0.53	+1.3
4,303,482	+		GFF4295	0.53	-1.5
4,303,482	+		GFF4295	0.53	+1.1
4,303,482	+		GFF4295	0.53	-1.1
4,303,482	+		GFF4295	0.53	-1.5
4,303,482	+		GFF4295	0.53	+0.2
4,303,482	+		GFF4295	0.53	-0.9
4,303,486	-		GFF4295	0.54	+0.9
4,303,487	+		GFF4295	0.54	-0.1
4,303,490	-		GFF4295	0.55	-0.4
4,303,490	-		GFF4295	0.55	-0.5
4,303,490	-		GFF4295	0.55	-1.3
4,303,490	-		GFF4295	0.55	-1.4
4,303,490	-		GFF4295	0.55	-0.5
4,303,490	-		GFF4295	0.55	-1.0
4,303,490	-		GFF4295	0.55	+0.9
4,303,490	-		GFF4295	0.55	-0.6
4,303,502	+		GFF4295	0.57	-1.8
4,303,502	+		GFF4295	0.57	-0.7
4,303,505	-		GFF4295	0.57	-0.1
4,303,510	-		GFF4295	0.58	-0.5
4,303,510	-		GFF4295	0.58	-1.2
4,303,510	-		GFF4295	0.58	-2.3
4,303,510	-		GFF4295	0.58	-0.9
4,303,519	+		GFF4295	0.59	-0.8
4,303,525	-		GFF4295	0.60	+0.2
4,303,527	-		GFF4295	0.61	-0.7
4,303,548	-		GFF4295	0.64	-1.2
4,303,560	-		GFF4295	0.66	-1.0
4,303,567	-		GFF4295	0.67	-0.7
4,303,589	-		GFF4295	0.71	-1.5
4,303,612	+		GFF4295	0.74	+1.8
4,303,612	+		GFF4295	0.74	-1.8
4,303,613	+		GFF4295	0.75	-1.2
4,303,656	-		GFF4295	0.81	-0.5
4,303,668	+		GFF4295	0.83	-1.2
4,303,674	+		GFF4295	0.84	+0.8
4,303,682	-		GFF4295	0.86	-0.4
4,303,693	-		GFF4295	0.87	-0.8
4,303,693	-		GFF4295	0.87	-0.5
4,303,749	+				-0.8
4,303,749	+				-0.3
4,303,749	+				-2.3
4,303,749	+				-0.5
4,303,757	-				-1.7
4,303,757	-				+0.1
4,303,757	-				-0.0
4,303,757	-				-0.8
4,303,762	+				+0.3
4,303,768	+				-1.7
4,303,782	+				+0.6
4,303,787	+				-0.7
4,303,795	-				-0.9
4,303,812	+				+0.4
4,303,820	+				-0.5
4,303,822	+				-0.4
4,303,822	+				-0.1
4,303,830	-				+0.0
4,303,830	-				-0.8
4,303,848	-				-0.5
4,303,858	+				+0.3
4,303,865	-				+0.5
4,303,881	+		GFF4296	0.12	-0.7
4,303,891	+		GFF4296	0.14	+0.7
4,303,896	+		GFF4296	0.16	-2.1
4,303,904	-		GFF4296	0.18	-1.0
4,303,912	+		GFF4296	0.20	-0.5
4,303,920	-		GFF4296	0.22	-1.7
4,303,920	-		GFF4296	0.22	-0.7
4,303,920	-		GFF4296	0.22	+0.7
4,303,920	-		GFF4296	0.22	-0.5
4,303,925	+		GFF4296	0.24	-0.8
4,303,925	+		GFF4296	0.24	-0.5
4,303,925	-		GFF4296	0.24	+0.5
4,303,925	-		GFF4296	0.24	-0.3
4,303,926	+		GFF4296	0.24	+0.7
4,303,933	-		GFF4296	0.26	+0.0
4,303,933	-		GFF4296	0.26	-0.1
4,303,937	+		GFF4296	0.27	-0.5
4,303,944	-		GFF4296	0.29	-1.6
4,303,944	-		GFF4296	0.29	-1.0
4,303,945	+		GFF4296	0.29	-0.3
4,303,953	+		GFF4296	0.31	+0.7
4,303,958	+		GFF4296	0.33	-1.0
4,303,963	+		GFF4296	0.34	-0.5
4,303,963	+		GFF4296	0.34	-1.1
4,303,966	-		GFF4296	0.35	+0.3
4,303,972	+		GFF4296	0.37	-1.1
4,303,980	-		GFF4296	0.39	-1.4
4,303,990	-		GFF4296	0.42	-0.4
4,304,022	-		GFF4296	0.50	-1.0
4,304,045	+		GFF4296	0.57	-1.1
4,304,050	+		GFF4296	0.58	-1.7
4,304,052	-		GFF4296	0.59	-1.0
4,304,055	+		GFF4296	0.60	-0.7
4,304,080	+		GFF4296	0.66	-1.5
4,304,086	+		GFF4296	0.68	-1.8
4,304,086	+		GFF4296	0.68	+0.3
4,304,094	-		GFF4296	0.70	-1.8
4,304,094	-		GFF4296	0.70	-0.5
4,304,094	-		GFF4296	0.70	-1.0
4,304,094	-		GFF4296	0.70	+0.1
4,304,094	-		GFF4296	0.70	-2.4
4,304,108	+		GFF4296	0.74	+0.1
4,304,108	+		GFF4296	0.74	-0.1
4,304,108	+		GFF4296	0.74	-1.7
4,304,108	+		GFF4296	0.74	-0.9
4,304,108	+		GFF4296	0.74	-2.1
4,304,108	+		GFF4296	0.74	+0.3
4,304,108	+		GFF4296	0.74	-0.7
4,304,108	+		GFF4296	0.74	-1.1
4,304,108	+		GFF4296	0.74	-0.3
4,304,116	-		GFF4296	0.76	-2.2
4,304,116	-		GFF4296	0.76	-0.9
4,304,116	-		GFF4296	0.76	+0.8
4,304,116	-		GFF4296	0.76	-1.3
4,304,116	-		GFF4296	0.76	+0.2
4,304,119	+		GFF4296	0.77	-0.8
4,304,137	+		GFF4296	0.82	-3.1
4,304,137	+		GFF4296	0.82	+0.1
4,304,144	-		GFF4296	0.84	-0.6
4,304,147	+		GFF4296	0.85	-2.1
4,304,149	+		GFF4296	0.85	-1.2
4,304,159	-		GFF4296	0.88	+0.7
4,304,177	+				+0.9
4,304,177	+				-1.5
4,304,182	+				-1.0
4,304,187	+				-0.5
4,304,188	+				-1.1
4,304,188	+				-0.2
4,304,188	+				-0.4
4,304,188	+				+0.1
4,304,188	+				-0.9
4,304,188	+				-0.9
4,304,188	+				-0.0
4,304,188	+				-2.0
4,304,188	+				+0.5
4,304,188	+				-1.1
4,304,188	+				-2.3
4,304,188	+				-1.5
4,304,196	-				-1.2
4,304,196	-				-1.5
4,304,196	-				-0.6
4,304,196	-				+0.2
4,304,196	-				-0.7
4,304,196	-				-1.3
4,304,196	-				-0.8
4,304,196	-				+0.2
4,304,196	-				+0.3
4,304,196	-				-1.5
4,304,198	+				+0.1
4,304,218	+				-0.3
4,304,259	+				-0.3
4,304,261	+				+0.7
4,304,269	-				-0.9
4,304,269	-				-1.3
4,304,294	+				+0.1
4,304,303	+				+0.1
4,304,303	+				-2.1
4,304,303	+				-0.7
4,304,316	+				+0.3
4,304,323	+				-0.6
4,304,329	-				+0.0
4,304,329	-				+0.1
4,304,330	-				+1.2
4,304,337	-				-1.6
4,304,337	-				-0.6
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