Strain Fitness in Sphingobium sp. HT1-2 around GFF4286

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,296,521	+		GFF4284	0.67	+0.8
4,296,521	+		GFF4284	0.67	-0.7
4,296,555	+		GFF4284	0.70	+0.8
4,296,555	+		GFF4284	0.70	-2.2
4,296,555	+		GFF4284	0.70	+1.1
4,296,555	+		GFF4284	0.70	-0.1
4,296,560	+		GFF4284	0.70	-1.3
4,296,577	+		GFF4284	0.72	-1.0
4,296,577	+		GFF4284	0.72	+0.6
4,296,581	+		GFF4284	0.72	-0.2
4,296,589	-		GFF4284	0.72	-1.2
4,296,595	+		GFF4284	0.73	-0.7
4,296,595	+		GFF4284	0.73	-0.8
4,296,603	-		GFF4284	0.73	-0.9
4,296,603	-		GFF4284	0.73	-0.9
4,296,603	-		GFF4284	0.73	-1.2
4,296,603	-		GFF4284	0.73	-1.2
4,296,636	-		GFF4284	0.76	-0.5
4,296,646	-		GFF4284	0.77	-2.0
4,296,652	+		GFF4284	0.77	-0.3
4,296,658	+		GFF4284	0.78	-0.2
4,296,668	+		GFF4284	0.78	-1.4
4,296,675	+		GFF4284	0.79	+1.3
4,296,683	-		GFF4284	0.79	+0.0
4,296,694	+		GFF4284	0.80	-0.8
4,296,699	+		GFF4284	0.81	+1.7
4,296,699	+		GFF4284	0.81	+0.2
4,296,707	+		GFF4284	0.81	-0.6
4,296,707	-		GFF4284	0.81	+0.3
4,296,707	-		GFF4284	0.81	-0.1
4,296,707	-		GFF4284	0.81	-0.5
4,296,707	-		GFF4284	0.81	+1.0
4,296,722	+		GFF4284	0.82	-1.9
4,296,724	+		GFF4284	0.82	+0.1
4,296,734	-		GFF4284	0.83	-1.4
4,296,774	-		GFF4284	0.86	-1.2
4,296,781	+		GFF4284	0.87	+1.7
4,296,789	+		GFF4284	0.87	-2.9
4,296,797	-		GFF4284	0.88	-1.0
4,296,811	+		GFF4284	0.89	-0.7
4,296,811	+		GFF4284	0.89	-0.8
4,296,819	-		GFF4284	0.89	+1.5
4,296,819	-		GFF4284	0.89	-0.8
4,296,819	-		GFF4284	0.89	-1.4
4,296,819	-		GFF4284	0.89	-2.4
4,296,821	+		GFF4284	0.90	-0.5
4,296,821	+		GFF4284	0.90	-0.7
4,296,829	-				+0.2
4,296,844	+				-1.2
4,296,852	-				+0.4
4,296,863	+				-1.9
4,296,863	+				+0.2
4,296,863	+				-1.4
4,296,863	+				-1.2
4,296,868	+				+1.3
4,296,868	+				-1.7
4,296,868	+				+0.1
4,296,868	+				-1.2
4,296,871	-				-0.7
4,296,871	-				-1.6
4,296,871	-				-0.5
4,296,871	-				-0.9
4,296,873	+				-1.1
4,296,873	+				+1.3
4,296,876	-				-1.0
4,296,876	-				-1.5
4,296,876	-				-0.2
4,296,876	-				-0.4
4,296,876	-				-0.2
4,296,876	-				+0.2
4,296,876	-				+0.4
4,296,876	-				+0.3
4,296,876	-				-0.1
4,296,883	+				-0.4
4,296,891	+				-0.3
4,296,891	-				+1.6
4,296,899	-				-0.8
4,296,933	+				+0.1
4,296,933	+				+0.3
4,296,938	+				-0.1
4,296,941	-				-0.8
4,296,941	-				-0.2
4,296,941	-				-1.6
4,296,941	-				-0.5
4,296,946	+				-2.2
4,296,946	+				-1.3
4,296,946	+				-1.2
4,296,946	+				-0.8
4,296,946	+				-0.5
4,296,946	+				-0.0
4,296,946	+				+0.9
4,296,946	+				-1.3
4,296,946	+				-1.7
4,296,946	+				-0.3
4,296,946	+				-1.7
4,296,954	-				-1.8
4,296,954	-				-2.0
4,296,954	-				+0.2
4,296,954	-				-1.2
4,296,973	+				-0.2
4,296,979	-				-0.9
4,296,981	-				-1.1
4,296,981	-				-2.1
4,296,988	-				-1.0
4,296,990	-				+0.7
4,297,014	+				-1.1
4,297,040	+				-0.8
4,297,059	+				-1.2
4,297,059	+				-1.9
4,297,073	+		GFF4285	0.11	+0.4
4,297,081	+		GFF4285	0.15	-0.5
4,297,081	+		GFF4285	0.15	-1.5
4,297,081	+		GFF4285	0.15	-1.3
4,297,081	+		GFF4285	0.15	+0.6
4,297,081	+		GFF4285	0.15	+0.0
4,297,081	+		GFF4285	0.15	-1.3
4,297,081	+		GFF4285	0.15	-0.3
4,297,081	+		GFF4285	0.15	-0.6
4,297,089	-		GFF4285	0.19	-0.9
4,297,089	-		GFF4285	0.19	-1.7
4,297,106	+		GFF4285	0.27	+0.2
4,297,114	-		GFF4285	0.31	-1.1
4,297,145	+		GFF4285	0.47	-2.0
4,297,150	-		GFF4285	0.49	-1.2
4,297,153	+		GFF4285	0.50	-1.3
4,297,158	+		GFF4285	0.53	+0.1
4,297,171	+		GFF4285	0.59	-0.2
4,297,172	+		GFF4285	0.60	-1.7
4,297,174	-		GFF4285	0.61	-1.6
4,297,179	-		GFF4285	0.63	+0.5
4,297,186	+		GFF4285	0.67	+0.2
4,297,186	-		GFF4285	0.67	-0.7
4,297,201	+		GFF4285	0.74	-0.3
4,297,201	+		GFF4285	0.74	+1.1
4,297,201	+		GFF4285	0.74	-1.4
4,297,203	+		GFF4285	0.75	-0.8
4,297,206	+		GFF4285	0.76	-0.3
4,297,209	-		GFF4285	0.78	-1.7
4,297,211	+		GFF4285	0.79	-0.4
4,297,233	+				-1.0
4,297,237	+				-1.1
4,297,237	-				-0.2
4,297,245	-				-0.8
4,297,245	-				-1.2
4,297,293	+				+0.9
4,297,293	+				-1.0
4,297,293	+				+0.2
4,297,293	+				-0.5
4,297,293	+				-0.7
4,297,293	+				-0.3
4,297,293	+				-0.5
4,297,293	+				-0.0
4,297,293	+				-0.9
4,297,293	+				-0.1
4,297,293	+				-1.7
4,297,293	+				-0.5
4,297,301	-				+0.7
4,297,301	-				+0.5
4,297,301	-				+1.4
4,297,301	-				-0.8
4,297,301	-				-1.2
4,297,301	-				-1.3
4,297,301	-				+0.3
4,297,301	-				+1.5
4,297,301	-				-0.6
4,297,301	-				-0.3
4,297,310	-				-0.9
4,297,326	+				-0.7
4,297,326	+				-0.7
4,297,326	+				-1.7
4,297,326	+				-1.2
4,297,326	+				+0.0
4,297,326	+				-0.7
4,297,326	+				-1.3
4,297,326	+				+1.1
4,297,326	+				-0.5
4,297,326	+				-2.3
4,297,328	+				-1.6
4,297,328	-				+0.1
4,297,334	-				-1.1
4,297,334	-				-0.9
4,297,334	-				-0.5
4,297,334	-				+0.2
4,297,334	-				-0.7
4,297,334	-				-0.5
4,297,334	-				+0.5
4,297,334	-				+0.8
4,297,336	-				-0.7
4,297,336	-				-0.1
4,297,341	-				+0.8
4,297,342	-				-0.8
4,297,360	+				+0.3
4,297,362	+				-1.1
4,297,366	+				-0.4
4,297,371	+				+0.3
4,297,377	+				-1.2
4,297,384	+				-1.0
4,297,412	-				+0.3
4,297,413	+				-0.2
4,297,441	-				-1.0
4,297,442	+				+0.2
4,297,463	-				+0.9
4,297,463	-				-0.5
4,297,473	-				-0.9
4,297,485	-				-0.8
4,297,500	+				-0.9
4,297,500	+				-1.0
4,297,500	+				+1.1
4,297,508	-				-0.7
4,297,508	-				-0.7
4,297,508	-				-0.9
4,297,508	-				-0.7
4,297,508	-				-0.1
4,297,510	-				-1.9
4,297,514	-				+0.1
4,297,521	+				-0.9
4,297,521	+				-0.2
4,297,521	+				-0.6
4,297,524	-				-1.0
4,297,524	-				-1.7
4,297,529	-				+0.3
4,297,529	-				-0.1
4,297,558	+		GFF4286	0.15	-0.6
4,297,558	+		GFF4286	0.15	-1.9
4,297,558	-		GFF4286	0.15	-1.6
4,297,558	-		GFF4286	0.15	-0.0
4,297,584	+		GFF4286	0.23	-2.1
4,297,604	+		GFF4286	0.30	+0.2
4,297,607	-		GFF4286	0.31	-0.5
4,297,612	-		GFF4286	0.32	-1.0
4,297,612	-		GFF4286	0.32	+0.1
4,297,614	+		GFF4286	0.33	-0.7
4,297,622	-		GFF4286	0.36	-0.7
4,297,637	+		GFF4286	0.41	-1.5
4,297,710	-		GFF4286	0.65	+0.7
4,297,711	+		GFF4286	0.65	-0.7
4,297,719	-		GFF4286	0.68	+0.1
4,297,732	+		GFF4286	0.72	-0.5
4,297,745	-		GFF4286	0.76	+0.2
4,297,745	-		GFF4286	0.76	-1.5
4,297,760	-		GFF4286	0.81	-1.5
4,297,760	-		GFF4286	0.81	+0.9
4,297,769	+		GFF4286	0.84	-3.0
4,297,769	+		GFF4286	0.84	-0.8
4,297,777	-		GFF4286	0.87	-0.5
4,297,777	-		GFF4286	0.87	-0.2
4,297,777	-		GFF4286	0.87	-1.1
4,297,789	-				-0.7
4,297,803	+				-0.1
4,297,804	-				-1.7
4,297,804	-				-1.0
4,297,804	-				-2.5
4,297,804	-				-1.0
4,297,810	+				+0.7
4,297,811	-				+1.3
4,297,811	-				-1.4
4,297,812	+				+0.2
4,297,812	+				-1.2
4,297,812	+				+1.1
4,297,812	+				+0.0
4,297,820	-				-0.5
4,297,859	+				-0.4
4,297,867	-				+0.0
4,297,867	-				-0.4
4,297,867	-				-0.8
4,297,878	+				+0.1
4,297,906	+				-0.5
4,297,909	-				-1.5
4,297,911	+				+1.3
4,297,911	+				-0.7
4,297,942	+				-2.3
4,297,942	+				-1.2
4,297,942	+				-0.8
4,297,942	+				-0.1
4,297,942	+				+0.9
4,297,944	+				-0.1
4,297,944	+				-1.4
4,297,944	+				-0.4
4,297,944	+				+0.4
4,297,949	+				-1.5
4,297,950	-				-1.1
4,297,950	-				+0.2
4,297,950	-				-0.5
4,297,952	-				-0.8
4,297,952	-				-1.5
4,297,952	-				-0.5
4,297,952	-				+1.9
4,297,952	-				-0.2
4,297,952	-				-0.2
4,297,957	-				-0.8
4,297,962	+				-1.6
4,297,968	+		GFF4287	0.11	-0.1
4,297,973	+		GFF4287	0.12	+0.0
4,298,019	+		GFF4287	0.19	-1.4
4,298,027	-		GFF4287	0.20	-0.2
4,298,027	-		GFF4287	0.20	-0.8
4,298,027	-		GFF4287	0.20	-1.8
4,298,031	+		GFF4287	0.21	-0.1
4,298,031	+		GFF4287	0.21	-0.0
4,298,032	+		GFF4287	0.21	+1.0
4,298,034	-		GFF4287	0.21	-1.0
4,298,037	+		GFF4287	0.22	-0.9
4,298,038	+		GFF4287	0.22	-1.5
4,298,038	+		GFF4287	0.22	-0.2
4,298,039	-		GFF4287	0.22	-0.1
4,298,043	+		GFF4287	0.23	-0.2
4,298,043	+		GFF4287	0.23	-1.0
4,298,043	+		GFF4287	0.23	-0.5
4,298,043	+		GFF4287	0.23	-0.6
4,298,043	+		GFF4287	0.23	-1.6
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	-1.9
4,298,043	+		GFF4287	0.23	+1.1
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	-0.7
4,298,043	+		GFF4287	0.23	-0.9
4,298,043	+		GFF4287	0.23	+0.2
4,298,043	+		GFF4287	0.23	-1.5
4,298,043	+		GFF4287	0.23	-1.5
4,298,043	+		GFF4287	0.23	-0.3
4,298,043	+		GFF4287	0.23	+0.1
4,298,043	+		GFF4287	0.23	-0.5
4,298,043	+		GFF4287	0.23	-0.5
4,298,043	+		GFF4287	0.23	-0.6
4,298,043	+		GFF4287	0.23	+0.6
4,298,043	+		GFF4287	0.23	+1.1
4,298,043	+		GFF4287	0.23	-0.3
4,298,043	+		GFF4287	0.23	+0.5
4,298,046	-		GFF4287	0.23	-1.5
4,298,046	-		GFF4287	0.23	-0.8
4,298,046	-		GFF4287	0.23	+1.0
4,298,051	+		GFF4287	0.24	-1.5
4,298,051	-		GFF4287	0.24	+0.9
4,298,051	-		GFF4287	0.24	+0.7
4,298,051	-		GFF4287	0.24	-2.6
4,298,051	-		GFF4287	0.24	-0.9
4,298,051	-		GFF4287	0.24	+0.8
4,298,051	-		GFF4287	0.24	-2.5
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	-1.1
4,298,051	-		GFF4287	0.24	-0.9
4,298,051	-		GFF4287	0.24	-1.0
4,298,051	-		GFF4287	0.24	-0.1
4,298,051	-		GFF4287	0.24	-0.4
4,298,051	-		GFF4287	0.24	-0.7
4,298,051	-		GFF4287	0.24	-1.7
4,298,051	-		GFF4287	0.24	-2.3
4,298,051	-		GFF4287	0.24	+0.2
4,298,051	-		GFF4287	0.24	-0.8
4,298,051	-		GFF4287	0.24	-1.0
4,298,051	-		GFF4287	0.24	-0.7
4,298,051	-		GFF4287	0.24	-1.9
4,298,051	-		GFF4287	0.24	-2.1
4,298,051	-		GFF4287	0.24	+1.3
4,298,051	-		GFF4287	0.24	-1.5
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	-0.9
4,298,051	-		GFF4287	0.24	-1.5
4,298,051	-		GFF4287	0.24	-0.5
4,298,051	-		GFF4287	0.24	-1.7
4,298,051	-		GFF4287	0.24	+0.3
4,298,053	+		GFF4287	0.24	-0.2
4,298,053	+		GFF4287	0.24	-0.4
4,298,059	+		GFF4287	0.25	-0.2
4,298,059	-		GFF4287	0.25	-0.9
4,298,061	-		GFF4287	0.25	-0.7
4,298,061	-		GFF4287	0.25	-0.8
4,298,061	-		GFF4287	0.25	+1.0
4,298,064	-		GFF4287	0.26	-0.5
4,298,069	-		GFF4287	0.27	-1.1
4,298,071	+		GFF4287	0.27	+0.3
4,298,079	-		GFF4287	0.28	-0.5
4,298,090	+		GFF4287	0.30	-1.7
4,298,116	+		GFF4287	0.34	-0.8
4,298,123	-		GFF4287	0.35	-1.2
4,298,145	+		GFF4287	0.39	-1.1
4,298,146	-		GFF4287	0.39	-2.1
4,298,157	+		GFF4287	0.41	-1.6
4,298,165	-		GFF4287	0.42	-0.5
4,298,176	+		GFF4287	0.44	-0.5
4,298,176	+		GFF4287	0.44	-1.7
4,298,181	+		GFF4287	0.44	-0.5
4,298,184	-		GFF4287	0.45	+0.5
4,298,184	-		GFF4287	0.45	-1.5
4,298,184	-		GFF4287	0.45	+0.0
4,298,184	-		GFF4287	0.45	+0.6
4,298,186	+		GFF4287	0.45	-1.8
4,298,186	+		GFF4287	0.45	-0.9
4,298,186	+		GFF4287	0.45	+0.4
4,298,194	-		GFF4287	0.46	-0.7
4,298,194	-		GFF4287	0.46	+0.3
4,298,194	-		GFF4287	0.46	+0.1
4,298,194	-		GFF4287	0.46	+0.3
4,298,194	-		GFF4287	0.46	+0.1
4,298,194	-		GFF4287	0.46	-1.4
4,298,194	-		GFF4287	0.46	+1.0
4,298,216	-		GFF4287	0.50	-0.2
4,298,218	+		GFF4287	0.50	-1.3
4,298,226	-		GFF4287	0.52	-0.8
4,298,239	-		GFF4287	0.54	-0.5
4,298,270	-		GFF4287	0.58	-1.8
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