Strain Fitness in Sphingobium sp. HT1-2 around GFF4280

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,291,385	+		GFF4277	0.63	+1.6
4,291,410	+		GFF4277	0.74	-0.1
4,291,410	+		GFF4277	0.74	-0.1
4,291,410	+		GFF4277	0.74	-1.2
4,291,412	+		GFF4277	0.75	+0.3
4,291,412	+		GFF4277	0.75	-1.1
4,291,415	+		GFF4277	0.76	-2.4
4,291,418	-		GFF4277	0.77	-0.0
4,291,420	-		GFF4277	0.78	-1.0
4,291,433	+		GFF4277	0.84	-0.6
4,291,433	+		GFF4277	0.84	-1.9
4,291,433	+		GFF4277	0.84	-0.1
4,291,433	+		GFF4277	0.84	-0.4
4,291,441	-		GFF4277	0.87	-0.1
4,291,441	-		GFF4277	0.87	-0.8
4,291,441	-		GFF4277	0.87	-1.3
4,291,441	-		GFF4277	0.87	+0.9
4,291,464	-				-0.7
4,291,474	-				+1.6
4,291,511	+		GFF4278	0.15	+0.5
4,291,511	+		GFF4278	0.15	-0.5
4,291,519	-		GFF4278	0.18	-1.5
4,291,519	-		GFF4278	0.18	+0.0
4,291,536	-		GFF4278	0.24	-0.1
4,291,537	+		GFF4278	0.24	-0.5
4,291,537	+		GFF4278	0.24	+0.5
4,291,545	-		GFF4278	0.27	+0.9
4,291,545	-		GFF4278	0.27	+0.1
4,291,571	+		GFF4278	0.36	+0.9
4,291,576	+		GFF4278	0.38	+0.8
4,291,579	+		GFF4278	0.39	+0.2
4,291,581	+		GFF4278	0.39	-1.2
4,291,581	+		GFF4278	0.39	-1.1
4,291,601	+		GFF4278	0.46	-0.3
4,291,601	+		GFF4278	0.46	+0.3
4,291,609	-		GFF4278	0.49	-1.2
4,291,634	+		GFF4278	0.58	+0.8
4,291,671	+		GFF4278	0.70	+0.0
4,291,682	-		GFF4278	0.74	-0.7
4,291,684	-		GFF4278	0.75	-1.0
4,291,696	-		GFF4278	0.79	-1.4
4,291,727	-				-1.5
4,291,784	+				+0.3
4,291,805	+		GFF4279	0.11	-0.6
4,291,810	+		GFF4279	0.12	-0.1
4,291,810	+		GFF4279	0.12	-0.5
4,291,813	-		GFF4279	0.13	-0.4
4,291,818	-		GFF4279	0.14	+0.1
4,291,818	-		GFF4279	0.14	+0.5
4,291,831	+		GFF4279	0.16	-0.4
4,291,831	+		GFF4279	0.16	+0.4
4,291,831	+		GFF4279	0.16	-1.0
4,291,831	+		GFF4279	0.16	-2.5
4,291,831	+		GFF4279	0.16	-1.5
4,291,831	+		GFF4279	0.16	-1.5
4,291,836	+		GFF4279	0.17	-0.7
4,291,837	-		GFF4279	0.17	+0.2
4,291,839	+		GFF4279	0.18	-0.0
4,291,839	-		GFF4279	0.18	-1.2
4,291,839	-		GFF4279	0.18	-0.5
4,291,839	-		GFF4279	0.18	-0.9
4,291,839	-		GFF4279	0.18	-0.4
4,291,839	-		GFF4279	0.18	-1.2
4,291,839	-		GFF4279	0.18	-0.7
4,291,839	-		GFF4279	0.18	-0.9
4,291,839	-		GFF4279	0.18	-0.1
4,291,839	-		GFF4279	0.18	+0.8
4,291,839	-		GFF4279	0.18	+0.2
4,291,839	-		GFF4279	0.18	-0.9
4,291,844	+		GFF4279	0.19	+0.3
4,291,844	+		GFF4279	0.19	+0.6
4,291,905	-		GFF4279	0.31	-0.7
4,291,983	-		GFF4279	0.46	-0.8
4,291,987	+		GFF4279	0.47	-0.2
4,292,002	+		GFF4279	0.50	-1.1
4,292,008	+		GFF4279	0.51	-1.3
4,292,015	-		GFF4279	0.52	-0.8
4,292,064	-		GFF4279	0.62	-1.7
4,292,077	+		GFF4279	0.65	+0.3
4,292,077	+		GFF4279	0.65	-0.8
4,292,077	+		GFF4279	0.65	-0.4
4,292,077	+		GFF4279	0.65	-1.7
4,292,077	+		GFF4279	0.65	-1.7
4,292,077	+		GFF4279	0.65	-1.4
4,292,077	+		GFF4279	0.65	-2.1
4,292,080	-		GFF4279	0.65	-1.0
4,292,085	-		GFF4279	0.66	+0.1
4,292,085	-		GFF4279	0.66	-0.4
4,292,085	-		GFF4279	0.66	-1.5
4,292,085	-		GFF4279	0.66	-2.2
4,292,085	-		GFF4279	0.66	+0.8
4,292,096	+		GFF4279	0.68	-2.3
4,292,098	+		GFF4279	0.69	-0.1
4,292,098	+		GFF4279	0.69	-1.3
4,292,098	+		GFF4279	0.69	-0.1
4,292,099	-		GFF4279	0.69	-1.1
4,292,103	+		GFF4279	0.70	+0.3
4,292,103	+		GFF4279	0.70	+0.2
4,292,103	+		GFF4279	0.70	-1.2
4,292,103	+		GFF4279	0.70	+0.6
4,292,103	+		GFF4279	0.70	+1.6
4,292,103	+		GFF4279	0.70	-1.4
4,292,103	+		GFF4279	0.70	-0.4
4,292,103	+		GFF4279	0.70	-0.9
4,292,103	+		GFF4279	0.70	+0.8
4,292,103	+		GFF4279	0.70	-1.7
4,292,106	-		GFF4279	0.70	-0.1
4,292,106	-		GFF4279	0.70	+0.7
4,292,106	-		GFF4279	0.70	-0.8
4,292,106	-		GFF4279	0.70	-1.3
4,292,108	+		GFF4279	0.71	-0.8
4,292,108	+		GFF4279	0.71	-0.2
4,292,108	+		GFF4279	0.71	+0.5
4,292,111	-		GFF4279	0.71	-0.9
4,292,111	-		GFF4279	0.71	-1.2
4,292,111	-		GFF4279	0.71	-2.7
4,292,111	-		GFF4279	0.71	-1.2
4,292,111	-		GFF4279	0.71	-1.5
4,292,111	-		GFF4279	0.71	-2.4
4,292,111	-		GFF4279	0.71	-0.2
4,292,111	-		GFF4279	0.71	-1.5
4,292,111	-		GFF4279	0.71	-0.4
4,292,111	-		GFF4279	0.71	-0.3
4,292,111	-		GFF4279	0.71	-0.3
4,292,111	-		GFF4279	0.71	-1.7
4,292,111	-		GFF4279	0.71	-0.3
4,292,111	-		GFF4279	0.71	-0.5
4,292,111	-		GFF4279	0.71	-1.0
4,292,111	-		GFF4279	0.71	+0.5
4,292,116	-		GFF4279	0.72	+0.0
4,292,116	-		GFF4279	0.72	+0.5
4,292,135	+		GFF4279	0.76	-1.0
4,292,153	-		GFF4279	0.79	+1.2
4,292,158	+		GFF4279	0.80	-0.9
4,292,158	+		GFF4279	0.80	-0.5
4,292,158	+		GFF4279	0.80	-0.8
4,292,161	-		GFF4279	0.81	+0.1
4,292,166	-		GFF4279	0.82	+0.6
4,292,166	-		GFF4279	0.82	-1.8
4,292,166	-		GFF4279	0.82	-1.4
4,292,166	-		GFF4279	0.82	-2.0
4,292,166	-		GFF4279	0.82	-0.4
4,292,166	-		GFF4279	0.82	-0.7
4,292,171	-		GFF4279	0.83	-1.1
4,292,171	-		GFF4279	0.83	-1.4
4,292,173	+		GFF4279	0.83	+0.7
4,292,173	+		GFF4279	0.83	-3.1
4,292,181	-		GFF4279	0.85	-1.8
4,292,181	-		GFF4279	0.85	-0.9
4,292,195	+		GFF4279	0.88	+0.7
4,292,198	-		GFF4279	0.88	-1.6
4,292,207	+				-0.5
4,292,208	-				+0.1
4,292,213	-				-0.2
4,292,217	+				+0.7
4,292,260	-				+0.2
4,292,278	-				-0.8
4,292,278	-				-1.0
4,292,288	-				-1.0
4,292,298	+				-1.2
4,292,298	+				-0.8
4,292,298	+				+0.3
4,292,303	+				-1.4
4,292,308	+				+0.9
4,292,308	+				-1.3
4,292,316	-				+0.8
4,292,323	+				-1.4
4,292,331	-				-1.5
4,292,331	-				-1.6
4,292,341	+				+0.0
4,292,341	+				-1.1
4,292,341	+				-1.2
4,292,341	+				+0.1
4,292,341	+				-1.1
4,292,341	+				+0.5
4,292,341	+				-0.9
4,292,341	+				+0.6
4,292,341	+				-2.6
4,292,341	+				-1.1
4,292,341	+				-2.1
4,292,347	-				-2.5
4,292,349	+				-1.2
4,292,349	-				+0.1
4,292,349	-				+0.0
4,292,349	-				-1.1
4,292,349	-				+0.3
4,292,349	-				-0.9
4,292,349	-				-1.4
4,292,349	-				+0.4
4,292,349	-				-0.6
4,292,349	-				+1.1
4,292,360	+				-1.2
4,292,365	+				-0.8
4,292,368	-				-0.9
4,292,370	+				+0.3
4,292,378	-				+0.9
4,292,378	-				-1.2
4,292,378	-				+0.0
4,292,383	+				-0.9
4,292,383	+				-2.2
4,292,383	+				-0.7
4,292,391	-				-1.1
4,292,400	+				-0.8
4,292,422	+				+0.2
4,292,430	-				-0.3
4,292,432	-				+0.4
4,292,432	-				+0.1
4,292,432	-				+0.6
4,292,476	+				-1.0
4,292,476	+				-1.4
4,292,484	-				-1.1
4,292,485	-				-0.9
4,292,501	+		GFF4280	0.11	-0.3
4,292,520	-		GFF4280	0.13	-0.2
4,292,557	+		GFF4280	0.16	-1.5
4,292,557	+		GFF4280	0.16	+0.7
4,292,562	+		GFF4280	0.17	+0.8
4,292,565	-		GFF4280	0.17	-0.8
4,292,565	-		GFF4280	0.17	-2.2
4,292,581	+		GFF4280	0.19	-0.9
4,292,583	+		GFF4280	0.19	+0.3
4,292,612	+		GFF4280	0.21	-0.9
4,292,615	+		GFF4280	0.22	-0.2
4,292,635	+		GFF4280	0.24	-0.2
4,292,639	+		GFF4280	0.24	-0.2
4,292,639	+		GFF4280	0.24	-2.2
4,292,645	+		GFF4280	0.25	+1.0
4,292,645	+		GFF4280	0.25	+1.3
4,292,645	+		GFF4280	0.25	+0.3
4,292,645	+		GFF4280	0.25	+0.2
4,292,653	-		GFF4280	0.25	+0.3
4,292,653	-		GFF4280	0.25	-0.2
4,292,655	+		GFF4280	0.25	+0.5
4,292,655	+		GFF4280	0.25	-0.5
4,292,655	+		GFF4280	0.25	-0.2
4,292,663	-		GFF4280	0.26	-0.7
4,292,678	+		GFF4280	0.28	-0.4
4,292,683	+		GFF4280	0.28	+0.3
4,292,691	-		GFF4280	0.29	-1.2
4,292,706	-		GFF4280	0.30	+0.1
4,292,708	+		GFF4280	0.31	-0.8
4,292,708	+		GFF4280	0.31	-0.7
4,292,708	+		GFF4280	0.31	-0.7
4,292,708	+		GFF4280	0.31	-1.1
4,292,708	+		GFF4280	0.31	-0.2
4,292,708	+		GFF4280	0.31	-1.2
4,292,708	+		GFF4280	0.31	+0.5
4,292,710	+		GFF4280	0.31	+0.3
4,292,710	+		GFF4280	0.31	-1.9
4,292,710	+		GFF4280	0.31	-0.8
4,292,712	+		GFF4280	0.31	-0.2
4,292,716	-		GFF4280	0.31	+0.3
4,292,716	-		GFF4280	0.31	+0.4
4,292,716	-		GFF4280	0.31	-0.8
4,292,716	-		GFF4280	0.31	-0.2
4,292,716	-		GFF4280	0.31	-0.8
4,292,716	-		GFF4280	0.31	+0.1
4,292,718	-		GFF4280	0.31	+0.0
4,292,718	-		GFF4280	0.31	-0.8
4,292,718	-		GFF4280	0.31	+0.8
4,292,726	-		GFF4280	0.32	-0.5
4,292,726	-		GFF4280	0.32	+0.3
4,292,747	+		GFF4280	0.34	+0.9
4,292,750	-		GFF4280	0.34	-1.7
4,292,752	+		GFF4280	0.35	+0.5
4,292,754	+		GFF4280	0.35	-0.7
4,292,762	-		GFF4280	0.36	+1.5
4,292,765	-		GFF4280	0.36	-1.5
4,292,782	+		GFF4280	0.37	-0.7
4,292,800	-		GFF4280	0.39	-0.5
4,292,806	-		GFF4280	0.40	-0.3
4,292,817	+		GFF4280	0.41	-0.9
4,292,818	+		GFF4280	0.41	+0.3
4,292,818	+		GFF4280	0.41	-0.7
4,292,818	+		GFF4280	0.41	-0.8
4,292,818	+		GFF4280	0.41	+0.4
4,292,823	+		GFF4280	0.41	-1.3
4,292,826	-		GFF4280	0.42	+1.0
4,292,826	-		GFF4280	0.42	-0.8
4,292,831	-		GFF4280	0.42	+0.0
4,292,835	+		GFF4280	0.42	-1.8
4,292,852	-		GFF4280	0.44	-0.3
4,292,854	+		GFF4280	0.44	+0.8
4,292,854	+		GFF4280	0.44	-1.1
4,292,854	+		GFF4280	0.44	-1.9
4,292,854	+		GFF4280	0.44	-0.5
4,292,862	-		GFF4280	0.45	-1.4
4,292,862	-		GFF4280	0.45	-0.8
4,292,862	-		GFF4280	0.45	-1.6
4,292,862	-		GFF4280	0.45	-1.1
4,292,890	+		GFF4280	0.48	+0.3
4,292,901	+		GFF4280	0.49	-0.8
4,292,909	+		GFF4280	0.49	+0.1
4,292,909	+		GFF4280	0.49	-1.3
4,292,917	-		GFF4280	0.50	+0.1
4,292,935	+		GFF4280	0.52	-0.8
4,292,941	+		GFF4280	0.53	-0.9
4,292,942	+		GFF4280	0.53	-1.4
4,292,942	+		GFF4280	0.53	-0.7
4,292,942	+		GFF4280	0.53	-0.8
4,292,942	-		GFF4280	0.53	+0.3
4,292,949	-		GFF4280	0.53	+1.7
4,292,949	-		GFF4280	0.53	-1.0
4,292,949	-		GFF4280	0.53	-0.9
4,292,949	-		GFF4280	0.53	-1.8
4,292,950	-		GFF4280	0.53	+0.2
4,292,950	-		GFF4280	0.53	+0.5
4,292,950	-		GFF4280	0.53	-0.5
4,292,976	-		GFF4280	0.56	-0.5
4,292,976	-		GFF4280	0.56	+0.7
4,292,976	-		GFF4280	0.56	-0.9
4,292,976	-		GFF4280	0.56	-1.7
4,292,989	+		GFF4280	0.57	-1.6
4,292,989	+		GFF4280	0.57	-1.1
4,292,989	+		GFF4280	0.57	-1.7
4,292,989	+		GFF4280	0.57	-0.4
4,292,989	+		GFF4280	0.57	-1.3
4,292,989	+		GFF4280	0.57	-0.4
4,292,994	+		GFF4280	0.58	-0.8
4,292,994	+		GFF4280	0.58	-1.7
4,292,997	-		GFF4280	0.58	+0.6
4,292,997	-		GFF4280	0.58	-0.8
4,292,997	-		GFF4280	0.58	-1.6
4,292,997	-		GFF4280	0.58	+0.9
4,292,997	-		GFF4280	0.58	-0.0
4,293,002	-		GFF4280	0.58	+0.3
4,293,008	+		GFF4280	0.59	+0.0
4,293,045	+		GFF4280	0.62	+1.1
4,293,050	+		GFF4280	0.63	-1.4
4,293,053	-		GFF4280	0.63	+0.4
4,293,053	-		GFF4280	0.63	-0.6
4,293,057	+		GFF4280	0.63	+0.7
4,293,063	+		GFF4280	0.64	-0.1
4,293,063	-		GFF4280	0.64	-0.1
4,293,111	+		GFF4280	0.69	-1.4
4,293,119	-		GFF4280	0.69	+0.0
4,293,119	-		GFF4280	0.69	-0.7
4,293,119	-		GFF4280	0.69	-1.2
4,293,126	-		GFF4280	0.70	+0.1
4,293,127	-		GFF4280	0.70	-1.7
4,293,127	-		GFF4280	0.70	+0.2
4,293,127	-		GFF4280	0.70	-0.7
4,293,127	-		GFF4280	0.70	+0.8
4,293,127	-		GFF4280	0.70	-1.0
4,293,130	+		GFF4280	0.70	+0.2
4,293,148	-		GFF4280	0.72	+1.3
4,293,148	-		GFF4280	0.72	+0.5
4,293,150	+		GFF4280	0.72	+1.3
4,293,151	+		GFF4280	0.72	+1.1
4,293,151	+		GFF4280	0.72	-0.5
4,293,151	+		GFF4280	0.72	-0.1
4,293,151	+		GFF4280	0.72	-1.2
4,293,152	-		GFF4280	0.72	-0.3
4,293,159	-		GFF4280	0.73	-0.5
4,293,159	-		GFF4280	0.73	+0.6
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