Strain Fitness in Sphingobium sp. HT1-2 around GFF4079

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,089,586	+		GFF4078	0.34	-2.2
4,089,587	-		GFF4078	0.34	-1.7
4,089,616	-		GFF4078	0.36	-0.9
4,089,629	+		GFF4078	0.37	-1.3
4,089,631	+		GFF4078	0.37	+1.2
4,089,631	+		GFF4078	0.37	-0.3
4,089,650	+		GFF4078	0.38	-1.8
4,089,658	-		GFF4078	0.39	-1.2
4,089,659	+		GFF4078	0.39	-0.7
4,089,660	+		GFF4078	0.39	+0.3
4,089,660	+		GFF4078	0.39	+0.7
4,089,660	-		GFF4078	0.39	-0.8
4,089,693	-		GFF4078	0.41	-0.4
4,089,708	+		GFF4078	0.42	-1.4
4,089,734	+		GFF4078	0.44	+0.4
4,089,736	+		GFF4078	0.44	-0.4
4,089,737	+		GFF4078	0.44	-1.4
4,089,742	+		GFF4078	0.44	-0.7
4,089,742	-		GFF4078	0.44	-0.5
4,089,750	-		GFF4078	0.45	-2.2
4,089,764	-		GFF4078	0.46	-0.9
4,089,765	+		GFF4078	0.46	+1.5
4,089,765	+		GFF4078	0.46	+0.4
4,089,773	-		GFF4078	0.46	-1.3
4,089,776	+		GFF4078	0.47	-0.1
4,089,784	-		GFF4078	0.47	-0.3
4,089,786	+		GFF4078	0.47	-0.1
4,089,786	+		GFF4078	0.47	+0.2
4,089,786	+		GFF4078	0.47	+0.4
4,089,786	+		GFF4078	0.47	-1.1
4,089,786	+		GFF4078	0.47	+0.0
4,089,786	+		GFF4078	0.47	-2.0
4,089,786	+		GFF4078	0.47	-0.9
4,089,786	+		GFF4078	0.47	-0.8
4,089,786	+		GFF4078	0.47	-0.2
4,089,786	+		GFF4078	0.47	-0.4
4,089,786	+		GFF4078	0.47	-0.0
4,089,786	+		GFF4078	0.47	+0.2
4,089,794	-		GFF4078	0.48	-2.9
4,089,794	-		GFF4078	0.48	+0.7
4,089,794	-		GFF4078	0.48	+0.1
4,089,794	-		GFF4078	0.48	+1.1
4,089,794	-		GFF4078	0.48	-0.5
4,089,794	-		GFF4078	0.48	+1.6
4,089,794	-		GFF4078	0.48	-0.5
4,089,794	-		GFF4078	0.48	-0.1
4,089,794	-		GFF4078	0.48	-1.6
4,089,794	-		GFF4078	0.48	+0.2
4,089,794	-		GFF4078	0.48	-0.4
4,089,823	+		GFF4078	0.50	-0.6
4,089,823	+		GFF4078	0.50	+0.6
4,089,829	+		GFF4078	0.50	+0.5
4,089,831	-		GFF4078	0.50	-1.0
4,089,835	+		GFF4078	0.50	-0.3
4,089,843	-		GFF4078	0.51	+1.1
4,089,858	+		GFF4078	0.52	+0.8
4,089,980	-		GFF4078	0.60	+0.6
4,089,982	+		GFF4078	0.60	-1.5
4,089,982	+		GFF4078	0.60	-1.3
4,089,982	+		GFF4078	0.60	-0.7
4,089,982	+		GFF4078	0.60	-0.2
4,089,990	-		GFF4078	0.61	-2.0
4,089,990	-		GFF4078	0.61	-0.3
4,090,015	+		GFF4078	0.63	-0.8
4,090,015	+		GFF4078	0.63	-0.8
4,090,015	+		GFF4078	0.63	-2.2
4,090,015	+		GFF4078	0.63	-1.3
4,090,015	+		GFF4078	0.63	-0.6
4,090,015	+		GFF4078	0.63	+0.2
4,090,020	+		GFF4078	0.63	-0.6
4,090,023	-		GFF4078	0.63	-0.1
4,090,023	-		GFF4078	0.63	-1.1
4,090,023	-		GFF4078	0.63	-1.2
4,090,023	-		GFF4078	0.63	-2.6
4,090,023	-		GFF4078	0.63	-0.2
4,090,023	-		GFF4078	0.63	-1.5
4,090,023	-		GFF4078	0.63	-0.2
4,090,023	-		GFF4078	0.63	-0.3
4,090,023	-		GFF4078	0.63	-0.9
4,090,023	-		GFF4078	0.63	+0.2
4,090,045	-		GFF4078	0.65	-0.0
4,090,045	-		GFF4078	0.65	-1.2
4,090,057	+		GFF4078	0.65	-0.9
4,090,067	+		GFF4078	0.66	-0.4
4,090,067	+		GFF4078	0.66	+1.1
4,090,075	-		GFF4078	0.67	-1.4
4,090,075	-		GFF4078	0.67	-0.9
4,090,082	+		GFF4078	0.67	-1.1
4,090,089	+		GFF4078	0.67	+0.0
4,090,089	+		GFF4078	0.67	-0.9
4,090,101	+		GFF4078	0.68	-2.4
4,090,109	-		GFF4078	0.69	-0.4
4,090,124	-		GFF4078	0.70	-0.1
4,090,137	+		GFF4078	0.71	-0.7
4,090,137	+		GFF4078	0.71	-1.1
4,090,137	+		GFF4078	0.71	-0.1
4,090,142	+		GFF4078	0.71	-1.0
4,090,142	+		GFF4078	0.71	-0.6
4,090,142	+		GFF4078	0.71	-0.5
4,090,142	+		GFF4078	0.71	-1.0
4,090,145	-		GFF4078	0.71	-2.6
4,090,145	-		GFF4078	0.71	-0.4
4,090,145	-		GFF4078	0.71	-0.2
4,090,145	-		GFF4078	0.71	-0.5
4,090,150	-		GFF4078	0.72	-2.0
4,090,150	-		GFF4078	0.72	-0.9
4,090,150	-		GFF4078	0.72	+0.9
4,090,150	-		GFF4078	0.72	-1.9
4,090,188	+		GFF4078	0.74	-0.4
4,090,208	+		GFF4078	0.75	+0.5
4,090,208	+		GFF4078	0.75	-0.5
4,090,217	-		GFF4078	0.76	-1.8
4,090,226	-		GFF4078	0.77	-2.4
4,090,241	+		GFF4078	0.78	+0.2
4,090,277	-		GFF4078	0.80	-0.6
4,090,304	+		GFF4078	0.82	-2.1
4,090,327	+		GFF4078	0.83	-1.2
4,090,343	-		GFF4078	0.84	-0.8
4,090,367	+		GFF4078	0.86	-1.0
4,090,367	+		GFF4078	0.86	-0.4
4,090,375	-		GFF4078	0.87	-0.7
4,090,375	-		GFF4078	0.87	+1.2
4,090,381	-		GFF4078	0.87	+0.1
4,090,405	+		GFF4078	0.89	-1.1
4,090,405	+		GFF4078	0.89	-0.3
4,090,413	-		GFF4078	0.89	-2.2
4,090,415	+		GFF4078	0.89	-0.4
4,090,415	-		GFF4078	0.89	-0.7
4,090,429	+				-1.0
4,090,430	-				+0.5
4,090,434	+				-1.1
4,090,441	+				-0.4
4,090,441	+				+0.3
4,090,449	-				-0.8
4,090,454	+				-0.6
4,090,455	-				+0.6
4,090,457	-				+1.2
4,090,468	+				-0.9
4,090,468	+				-2.0
4,090,481	+				-1.0
4,090,481	+				+1.1
4,090,481	+				-0.4
4,090,481	+				-1.4
4,090,481	+				-0.7
4,090,481	+				-0.4
4,090,481	+				-0.0
4,090,489	-				+0.1
4,090,489	-				-1.9
4,090,489	-				-0.2
4,090,489	-				-1.2
4,090,489	-				+0.3
4,090,489	-				-1.0
4,090,489	-				-0.7
4,090,520	+				-1.4
4,090,528	-				+0.1
4,090,528	-				-0.9
4,090,548	+				-0.3
4,090,556	-				+0.8
4,090,556	-				-0.1
4,090,572	+				-1.0
4,090,602	-				+0.9
4,090,624	+				-0.9
4,090,624	+				-1.6
4,090,624	+				-0.6
4,090,627	-				-0.9
4,090,627	-				-0.2
4,090,627	-				+0.3
4,090,638	+				+0.2
4,090,653	-		GFF4079	0.10	-1.2
4,090,655	+		GFF4079	0.10	-1.4
4,090,661	+		GFF4079	0.11	-0.9
4,090,661	+		GFF4079	0.11	-1.4
4,090,661	+		GFF4079	0.11	+0.0
4,090,663	-		GFF4079	0.12	+0.9
4,090,669	-		GFF4079	0.12	-1.6
4,090,669	-		GFF4079	0.12	-0.9
4,090,669	-		GFF4079	0.12	-0.5
4,090,669	-		GFF4079	0.12	+0.8
4,090,669	-		GFF4079	0.12	-1.0
4,090,669	-		GFF4079	0.12	+0.1
4,090,669	-		GFF4079	0.12	-1.1
4,090,720	+		GFF4079	0.19	-0.7
4,090,721	+		GFF4079	0.20	-0.8
4,090,729	+		GFF4079	0.21	-1.8
4,090,729	-		GFF4079	0.21	-0.7
4,090,729	-		GFF4079	0.21	-1.6
4,090,740	+		GFF4079	0.22	-1.1
4,090,741	+		GFF4079	0.22	-1.0
4,090,772	+		GFF4079	0.27	-1.4
4,090,802	+		GFF4079	0.31	-2.8
4,090,807	+		GFF4079	0.31	-0.5
4,090,807	+		GFF4079	0.31	-1.0
4,090,807	+		GFF4079	0.31	-0.3
4,090,807	+		GFF4079	0.31	+0.5
4,090,815	-		GFF4079	0.33	+1.3
4,090,824	+		GFF4079	0.34	-0.3
4,090,873	+		GFF4079	0.40	+0.8
4,090,874	+		GFF4079	0.41	-0.1
4,090,874	+		GFF4079	0.41	+0.7
4,090,874	+		GFF4079	0.41	-1.7
4,090,874	+		GFF4079	0.41	+1.1
4,090,881	-		GFF4079	0.42	-1.0
4,090,881	-		GFF4079	0.42	-0.4
4,090,882	-		GFF4079	0.42	-1.9
4,090,882	-		GFF4079	0.42	-0.6
4,090,886	+		GFF4079	0.42	+0.5
4,090,886	+		GFF4079	0.42	+0.1
4,090,886	+		GFF4079	0.42	-1.7
4,090,894	-		GFF4079	0.43	-0.4
4,090,894	-		GFF4079	0.43	-0.5
4,090,894	-		GFF4079	0.43	-2.1
4,090,894	-		GFF4079	0.43	-1.4
4,090,894	-		GFF4079	0.43	-0.9
4,090,894	-		GFF4079	0.43	-1.4
4,090,898	+		GFF4079	0.44	-1.3
4,090,904	+		GFF4079	0.45	-0.7
4,090,916	-		GFF4079	0.46	-0.8
4,090,921	-		GFF4079	0.47	-1.2
4,090,923	+		GFF4079	0.47	-0.5
4,090,923	+		GFF4079	0.47	-1.6
4,090,923	+		GFF4079	0.47	-1.0
4,090,923	+		GFF4079	0.47	+0.2
4,090,923	+		GFF4079	0.47	-0.5
4,090,923	+		GFF4079	0.47	-2.0
4,090,923	+		GFF4079	0.47	-2.1
4,090,923	+		GFF4079	0.47	-0.8
4,090,923	+		GFF4079	0.47	-0.3
4,090,923	+		GFF4079	0.47	+0.1
4,090,923	+		GFF4079	0.47	+0.6
4,090,931	-		GFF4079	0.48	-0.0
4,090,931	-		GFF4079	0.48	-2.0
4,090,931	-		GFF4079	0.48	-0.5
4,090,931	-		GFF4079	0.48	-1.4
4,090,931	-		GFF4079	0.48	+0.5
4,090,931	-		GFF4079	0.48	+0.5
4,090,931	-		GFF4079	0.48	-1.0
4,090,931	-		GFF4079	0.48	-0.3
4,090,931	-		GFF4079	0.48	-1.2
4,090,931	-		GFF4079	0.48	-1.1
4,090,931	-		GFF4079	0.48	-0.5
4,090,931	-		GFF4079	0.48	-0.5
4,090,931	-		GFF4079	0.48	-1.5
4,090,931	-		GFF4079	0.48	-1.1
4,090,931	-		GFF4079	0.48	-0.7
4,090,931	-		GFF4079	0.48	-1.2
4,090,931	-		GFF4079	0.48	-0.0
4,090,931	-		GFF4079	0.48	-2.6
4,090,931	-		GFF4079	0.48	+0.4
4,090,931	-		GFF4079	0.48	+1.2
4,090,941	-		GFF4079	0.50	+0.0
4,091,009	+		GFF4079	0.59	-0.4
4,091,029	+		GFF4079	0.62	-0.0
4,091,029	+		GFF4079	0.62	-1.4
4,091,037	-		GFF4079	0.63	+0.7
4,091,037	-		GFF4079	0.63	+0.7
4,091,038	-		GFF4079	0.63	-1.6
4,091,051	+		GFF4079	0.65	+0.6
4,091,057	+		GFF4079	0.66	+0.1
4,091,057	+		GFF4079	0.66	-0.9
4,091,057	+		GFF4079	0.66	-2.0
4,091,057	+		GFF4079	0.66	+0.0
4,091,057	+		GFF4079	0.66	-1.1
4,091,057	+		GFF4079	0.66	-2.1
4,091,057	+		GFF4079	0.66	+0.2
4,091,057	+		GFF4079	0.66	-0.4
4,091,057	+		GFF4079	0.66	-1.3
4,091,059	-		GFF4079	0.66	-0.4
4,091,065	-		GFF4079	0.67	-1.8
4,091,065	-		GFF4079	0.67	-1.8
4,091,065	-		GFF4079	0.67	-2.2
4,091,065	-		GFF4079	0.67	-2.0
4,091,070	-		GFF4079	0.68	-2.0
4,091,089	-		GFF4079	0.70	-0.0
4,091,096	+		GFF4079	0.71	-0.3
4,091,096	+		GFF4079	0.71	+0.3
4,091,101	+		GFF4079	0.72	-0.5
4,091,104	-		GFF4079	0.72	-0.2
4,091,104	-		GFF4079	0.72	-0.4
4,091,120	-		GFF4079	0.75	-1.7
4,091,123	+		GFF4079	0.75	-1.5
4,091,129	+		GFF4079	0.76	-0.5
4,091,129	+		GFF4079	0.76	-0.5
4,091,129	+		GFF4079	0.76	+0.0
4,091,131	-		GFF4079	0.76	-0.8
4,091,131	-		GFF4079	0.76	-1.0
4,091,131	-		GFF4079	0.76	+0.2
4,091,134	+		GFF4079	0.76	+0.0
4,091,137	+		GFF4079	0.77	-0.7
4,091,137	-		GFF4079	0.77	+0.1
4,091,139	+		GFF4079	0.77	+0.0
4,091,142	-		GFF4079	0.78	-1.3
4,091,155	-		GFF4079	0.79	-1.2
4,091,157	-		GFF4079	0.80	-0.4
4,091,174	+		GFF4079	0.82	-0.6
4,091,193	+		GFF4079	0.85	-0.3
4,091,216	+		GFF4079	0.88	+0.4
4,091,227	+		GFF4079	0.89	+0.2
4,091,228	-		GFF4079	0.89	-0.1
4,091,234	-				-1.0
4,091,236	+				-0.9
4,091,236	+				+0.0
4,091,239	-				-1.3
4,091,244	-				-1.4
4,091,244	-				-1.0
4,091,249	-				-0.1
4,091,249	-				+0.4
4,091,252	+				+0.8
4,091,265	-				-1.7
4,091,309	+				+0.0
4,091,311	+				+0.3
4,091,316	+				-1.1
4,091,316	+				-0.7
4,091,319	-				-1.4
4,091,325	+				-0.8
4,091,359	-				-0.4
4,091,362	+				-2.2
4,091,362	+				-0.9
4,091,362	+				-0.7
4,091,367	+				-2.0
4,091,367	+				+0.7
4,091,367	+				-0.1
4,091,367	+				+0.1
4,091,367	+				+1.7
4,091,370	-				-0.4
4,091,370	-				-1.6
4,091,370	-				-0.7
4,091,375	-				-1.2
4,091,375	-				+0.5
4,091,375	-				-0.2
4,091,375	-				+1.2
4,091,382	-				+0.1
4,091,382	-				-1.3
4,091,382	-				-1.0
4,091,382	-				+0.7
4,091,385	+				-0.5
4,091,400	+				-2.2
4,091,406	+				-0.9
4,091,414	-				-1.9
4,091,414	-				-0.8
4,091,414	-				+0.1
4,091,417	+				-1.1
4,091,427	+				-0.2
4,091,427	+				-1.2
4,091,428	+				-0.8
4,091,428	+				-1.4
4,091,430	-				-2.1
4,091,442	+				+0.7
4,091,454	-				-0.4
4,091,454	-				-0.9
4,091,494	+				-2.3
4,091,494	+				-0.6
4,091,495	+				+0.7
4,091,502	-				-0.4
4,091,514	+				-1.6
4,091,524	+				+0.6
4,091,524	+				-1.9
4,091,527	-				-0.7
4,091,527	-				+0.2
4,091,542	+				+0.2
4,091,547	+				-0.4
4,091,552	+				-2.1
4,091,571	+				-1.2
4,091,579	-				-1.7
4,091,580	+				+0.4
4,091,580	+				+0.4
4,091,592	-				-0.3
4,091,592	-				-0.7
4,091,606	+				-1.2
4,091,611	+				-0.6
4,091,616	+				+0.3
4,091,624	+		GFF4080	0.10	+0.7
4,091,624	-		GFF4080	0.10	-1.5
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