Strain Fitness in Sphingobium sp. HT1-2 around GFF4076

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,086,968	+		GFF4075	0.36	-0.7
4,086,968	+		GFF4075	0.36	-0.1
4,086,968	+		GFF4075	0.36	-0.7
4,086,968	+		GFF4075	0.36	-1.8
4,087,014	+		GFF4075	0.39	-2.9
4,087,022	-		GFF4075	0.40	-0.3
4,087,061	+		GFF4075	0.42	+1.1
4,087,061	+		GFF4075	0.42	+1.7
4,087,068	-		GFF4075	0.43	+0.2
4,087,069	-		GFF4075	0.43	-0.3
4,087,069	-		GFF4075	0.43	-0.6
4,087,076	-		GFF4075	0.44	+0.4
4,087,101	-		GFF4075	0.45	+1.4
4,087,103	+		GFF4075	0.46	+0.6
4,087,127	-		GFF4075	0.47	-0.8
4,087,127	-		GFF4075	0.47	-0.2
4,087,127	-		GFF4075	0.47	+0.2
4,087,127	-		GFF4075	0.47	-0.7
4,087,127	-		GFF4075	0.47	+0.6
4,087,127	-		GFF4075	0.47	-0.9
4,087,127	-		GFF4075	0.47	-1.2
4,087,151	+		GFF4075	0.49	-0.3
4,087,172	+		GFF4075	0.51	+0.6
4,087,188	+		GFF4075	0.52	-0.7
4,087,203	-		GFF4075	0.53	+1.1
4,087,235	-		GFF4075	0.55	-0.1
4,087,240	-		GFF4075	0.56	-0.2
4,087,251	+		GFF4075	0.56	-0.2
4,087,251	+		GFF4075	0.56	+1.1
4,087,251	+		GFF4075	0.56	+1.2
4,087,259	-		GFF4075	0.57	-0.2
4,087,259	-		GFF4075	0.57	-1.6
4,087,264	+		GFF4075	0.57	-1.7
4,087,272	-		GFF4075	0.58	-0.3
4,087,310	+		GFF4075	0.61	+0.8
4,087,310	+		GFF4075	0.61	+0.6
4,087,310	+		GFF4075	0.61	-1.3
4,087,310	+		GFF4075	0.61	-1.5
4,087,310	+		GFF4075	0.61	-0.1
4,087,310	+		GFF4075	0.61	+1.4
4,087,310	+		GFF4075	0.61	+0.2
4,087,318	-		GFF4075	0.61	-0.3
4,087,318	-		GFF4075	0.61	+1.4
4,087,318	-		GFF4075	0.61	-1.5
4,087,320	+		GFF4075	0.62	+0.2
4,087,320	+		GFF4075	0.62	-0.6
4,087,320	+		GFF4075	0.62	-0.4
4,087,320	+		GFF4075	0.62	-1.5
4,087,320	+		GFF4075	0.62	-0.4
4,087,320	+		GFF4075	0.62	-0.9
4,087,328	-		GFF4075	0.62	+0.1
4,087,328	-		GFF4075	0.62	-1.6
4,087,334	+		GFF4075	0.63	-0.6
4,087,334	+		GFF4075	0.63	-1.5
4,087,334	+		GFF4075	0.63	-1.6
4,087,334	+		GFF4075	0.63	-0.4
4,087,334	+		GFF4075	0.63	+0.5
4,087,334	+		GFF4075	0.63	+0.1
4,087,334	+		GFF4075	0.63	-0.7
4,087,392	+		GFF4075	0.67	-1.3
4,087,392	+		GFF4075	0.67	-2.1
4,087,405	-		GFF4075	0.68	+1.4
4,087,407	+		GFF4075	0.68	+1.1
4,087,407	+		GFF4075	0.68	-0.8
4,087,410	-		GFF4075	0.68	-1.3
4,087,415	-		GFF4075	0.69	-0.1
4,087,415	-		GFF4075	0.69	+0.2
4,087,415	-		GFF4075	0.69	+1.1
4,087,415	-		GFF4075	0.69	-0.5
4,087,422	+		GFF4075	0.69	-0.1
4,087,429	+		GFF4075	0.70	-0.1
4,087,430	-		GFF4075	0.70	+1.1
4,087,459	+		GFF4075	0.72	-0.7
4,087,459	+		GFF4075	0.72	+0.3
4,087,482	+		GFF4075	0.73	-0.9
4,087,513	+		GFF4075	0.76	+0.5
4,087,521	-		GFF4075	0.76	+1.4
4,087,521	-		GFF4075	0.76	-0.9
4,087,556	-		GFF4075	0.79	-0.1
4,087,585	-		GFF4075	0.81	-1.2
4,087,602	-		GFF4075	0.82	+0.1
4,087,608	+		GFF4075	0.83	+0.4
4,087,615	+		GFF4075	0.83	+0.5
4,087,618	+		GFF4075	0.83	+0.4
4,087,621	-		GFF4075	0.84	-0.9
4,087,671	+		GFF4075	0.87	+0.6
4,087,671	+		GFF4075	0.87	-0.1
4,087,678	+		GFF4075	0.88	-0.3
4,087,678	-		GFF4075	0.88	+0.9
4,087,679	-		GFF4075	0.88	+1.4
4,087,685	-		GFF4075	0.88	-0.4
4,087,686	-		GFF4075	0.88	-1.4
4,087,727	-				-1.3
4,087,762	+				+0.8
4,087,766	-				+0.8
4,087,768	-				-0.3
4,087,768	-				-1.4
4,087,770	-				-1.6
4,087,803	+				+0.6
4,087,811	-				-1.7
4,087,815	+				-1.3
4,087,815	+				+0.5
4,087,823	-				+1.1
4,087,823	-				-0.1
4,087,828	-				+0.4
4,087,840	-				+0.4
4,087,854	-				-0.1
4,087,861	+				-0.4
4,087,875	-				+0.1
4,087,893	-				-0.8
4,087,914	-				-1.8
4,087,957	-				-1.0
4,087,964	-				+0.8
4,087,972	+				-0.0
4,087,980	-				-0.2
4,088,048	-		GFF4076	0.14	+0.1
4,088,109	+		GFF4076	0.23	+0.9
4,088,121	+		GFF4076	0.24	-0.5
4,088,121	+		GFF4076	0.24	+0.1
4,088,121	+		GFF4076	0.24	-1.1
4,088,129	-		GFF4076	0.26	-0.4
4,088,129	-		GFF4076	0.26	+0.6
4,088,142	+		GFF4076	0.28	-0.3
4,088,148	-		GFF4076	0.29	+1.2
4,088,150	-		GFF4076	0.29	-0.8
4,088,150	-		GFF4076	0.29	-0.3
4,088,151	-		GFF4076	0.29	-1.5
4,088,155	+		GFF4076	0.30	+2.3
4,088,155	-		GFF4076	0.30	-0.2
4,088,184	+		GFF4076	0.34	+0.8
4,088,215	-		GFF4076	0.39	-0.8
4,088,327	-		GFF4076	0.55	+0.6
4,088,327	-		GFF4076	0.55	-0.7
4,088,327	-		GFF4076	0.55	-1.1
4,088,365	+		GFF4076	0.61	+1.1
4,088,370	+		GFF4076	0.62	-0.3
4,088,388	+		GFF4076	0.65	+1.4
4,088,388	+		GFF4076	0.65	-0.3
4,088,388	+		GFF4076	0.65	+1.4
4,088,396	-		GFF4076	0.66	-0.7
4,088,479	-		GFF4076	0.78	-1.3
4,088,479	-		GFF4076	0.78	-0.5
4,088,571	+				-1.0
4,088,576	-				-0.2
4,088,579	-				-0.7
4,088,579	-				+0.6
4,088,579	-				-0.6
4,088,592	-				+0.8
4,088,633	-				+0.8
4,088,662	-				+0.1
4,088,684	+				-0.0
4,088,843	+		GFF4077	0.50	-0.7
4,088,990	-				+0.4
4,089,007	+				+0.6
4,089,008	+				+0.2
4,089,015	-				+0.3
4,089,017	+				-0.4
4,089,025	-				+0.9
4,089,026	+				-1.1
4,089,045	+				-1.5
4,089,053	-				+1.7
4,089,103	-				-1.1
4,089,125	-				-1.2
4,089,132	+				-0.5
4,089,140	-				-0.1
4,089,151	+				-1.5
4,089,151	+				+1.2
4,089,151	+				-1.4
4,089,151	+				-1.7
4,089,151	+				+1.1
4,089,153	+				-1.4
4,089,185	+				-0.7
4,089,193	-				+0.3
4,089,193	-				+1.2
4,089,193	-				-0.1
4,089,194	+				-1.4
4,089,194	+				+0.1
4,089,194	+				-0.7
4,089,202	-				+0.8
4,089,210	+				-0.9
4,089,211	+				-1.6
4,089,216	+				-1.1
4,089,216	+				+0.8
4,089,221	+				+1.5
4,089,221	+				+0.2
4,089,222	+				+0.2
4,089,229	-				+0.7
4,089,237	+		GFF4078	0.10	-0.8
4,089,253	+		GFF4078	0.12	-0.4
4,089,253	+		GFF4078	0.12	-0.6
4,089,261	-		GFF4078	0.12	-1.2
4,089,271	-		GFF4078	0.13	+1.3
4,089,272	+		GFF4078	0.13	+0.5
4,089,277	+		GFF4078	0.13	-1.8
4,089,278	+		GFF4078	0.13	-0.4
4,089,278	-		GFF4078	0.13	-0.7
4,089,296	+		GFF4078	0.14	-0.6
4,089,296	-		GFF4078	0.14	-0.3
4,089,308	+		GFF4078	0.15	-1.4
4,089,314	-		GFF4078	0.16	-1.4
4,089,314	-		GFF4078	0.16	-1.3
4,089,314	-		GFF4078	0.16	-0.2
4,089,331	-		GFF4078	0.17	-0.6
4,089,336	+		GFF4078	0.17	-0.5
4,089,347	-		GFF4078	0.18	-1.5
4,089,351	+		GFF4078	0.18	+0.7
4,089,354	-		GFF4078	0.18	+0.7
4,089,364	-		GFF4078	0.19	+0.2
4,089,401	+		GFF4078	0.21	-1.3
4,089,411	+		GFF4078	0.22	-1.3
4,089,444	+		GFF4078	0.24	+0.1
4,089,465	+		GFF4078	0.26	+0.1
4,089,473	-		GFF4078	0.26	-0.1
4,089,497	+		GFF4078	0.28	-0.2
4,089,505	-		GFF4078	0.28	+0.2
4,089,519	+		GFF4078	0.29	+0.5
4,089,535	-		GFF4078	0.30	-0.4
4,089,539	+		GFF4078	0.31	+0.5
4,089,563	+		GFF4078	0.32	-0.7
4,089,586	+		GFF4078	0.34	-1.9
4,089,587	-		GFF4078	0.34	-1.4