Strain Fitness in Sphingobium sp. HT1-2 around GFF4050

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,060,970	+		GFF4047	0.47	+1.2
4,060,979	+		GFF4047	0.49	+0.1
4,060,983	+		GFF4047	0.50	-2.4
4,061,036	+		GFF4047	0.58	-2.4
4,061,043	+		GFF4047	0.59	-0.9
4,061,043	-		GFF4047	0.59	-0.4
4,061,044	-		GFF4047	0.60	+0.6
4,061,044	-		GFF4047	0.60	-2.9
4,061,051	-		GFF4047	0.61	-0.0
4,061,063	+		GFF4047	0.63	-1.7
4,061,094	+		GFF4047	0.68	-1.1
4,061,094	+		GFF4047	0.68	+0.4
4,061,094	+		GFF4047	0.68	+1.0
4,061,102	-		GFF4047	0.69	+0.3
4,061,126	-		GFF4047	0.73	-0.9
4,061,131	-		GFF4047	0.74	-1.4
4,061,154	+		GFF4047	0.78	+1.4
4,061,154	+		GFF4047	0.78	-0.3
4,061,154	+		GFF4047	0.78	+1.2
4,061,154	+		GFF4047	0.78	-0.9
4,061,162	-		GFF4047	0.79	-0.1
4,061,162	-		GFF4047	0.79	-0.9
4,061,162	-		GFF4047	0.79	-0.7
4,061,162	-		GFF4047	0.79	-0.6
4,061,178	-		GFF4047	0.82	+0.7
4,061,220	+		GFF4047	0.89	+0.3
4,061,220	+		GFF4047	0.89	+0.5
4,061,220	+		GFF4047	0.89	+0.3
4,061,220	+		GFF4047	0.89	-0.7
4,061,223	-		GFF4047	0.89	+0.1
4,061,228	-				+1.1
4,061,228	-				-0.6
4,061,251	+				-0.4
4,061,251	+				-1.7
4,061,251	+				-1.8
4,061,251	+				-0.7
4,061,251	+				-0.8
4,061,251	+				+0.9
4,061,251	+				-0.2
4,061,259	-				+0.3
4,061,259	-				-0.9
4,061,259	-				-0.8
4,061,259	-				+0.3
4,061,259	-				-0.5
4,061,262	+				-0.8
4,061,268	-				-1.0
4,061,277	+				-1.2
4,061,279	-				-0.2
4,061,281	-				-0.5
4,061,287	-				-0.7
4,061,287	-				+0.2
4,061,291	-				-0.2
4,061,296	-				-0.7
4,061,325	-				-0.9
4,061,373	-				-1.0
4,061,484	-		GFF4048	0.12	-0.2
4,061,505	-		GFF4048	0.22	+0.5
4,061,505	-		GFF4048	0.22	+1.1
4,061,505	-		GFF4048	0.22	-0.4
4,061,505	-		GFF4048	0.22	-1.3
4,061,507	+		GFF4048	0.23	+0.8
4,061,507	+		GFF4048	0.23	-0.5
4,061,507	+		GFF4048	0.23	+0.9
4,061,507	-		GFF4048	0.23	-1.1
4,061,515	-		GFF4048	0.27	-0.9
4,061,517	+		GFF4048	0.28	-2.0
4,061,557	+		GFF4048	0.48	-1.9
4,061,569	+		GFF4048	0.54	+0.7
4,061,569	+		GFF4048	0.54	-1.5
4,061,592	-		GFF4048	0.66	-1.1
4,061,592	-		GFF4048	0.66	-0.5
4,061,610	-		GFF4048	0.75	-1.4
4,061,617	+		GFF4048	0.78	-1.9
4,061,617	+		GFF4048	0.78	-0.6
4,061,617	+		GFF4048	0.78	-2.8
4,061,617	+		GFF4048	0.78	-1.3
4,061,620	-		GFF4048	0.80	-1.5
4,061,621	+		GFF4048	0.80	-1.2
4,061,625	-		GFF4048	0.82	-1.5
4,061,625	-		GFF4048	0.82	-0.2
4,061,641	+				-2.1
4,061,641	+				-0.6
4,061,641	+				-0.5
4,061,641	+				-0.9
4,061,641	+				+0.4
4,061,641	+				-0.5
4,061,641	+				-1.1
4,061,649	-				+0.2
4,061,649	-				-1.3
4,061,656	+				-0.2
4,061,659	+				-0.9
4,061,659	+				-2.6
4,061,661	+				-0.4
4,061,668	-				-1.5
4,061,695	+				-0.5
4,061,695	+				-0.6
4,061,719	-				+0.6
4,061,729	+				-0.8
4,061,865	+				-0.6
4,061,873	-				+0.4
4,061,879	-				-0.4
4,061,935	+				-0.7
4,061,937	+				+0.9
4,061,937	+				+1.0
4,061,937	+				-1.2
4,061,946	+				-0.4
4,061,955	+				-0.4
4,061,963	-				+0.2
4,061,966	+				-1.4
4,062,103	+		GFF4050	0.11	-0.7
4,062,242	+		GFF4050	0.20	+0.0
4,062,242	+		GFF4050	0.20	+0.5
4,062,242	+		GFF4050	0.20	+0.7
4,062,250	-		GFF4050	0.20	-0.9
4,062,316	+		GFF4050	0.24	-1.1
4,062,316	+		GFF4050	0.24	-0.8
4,062,338	+		GFF4050	0.26	-0.6
4,062,364	+		GFF4050	0.27	+0.8
4,062,449	+		GFF4050	0.33	-1.1
4,062,457	-		GFF4050	0.33	+0.6
4,062,494	+		GFF4050	0.35	-0.6
4,062,505	+		GFF4050	0.36	-0.4
4,062,505	+		GFF4050	0.36	-1.2
4,062,515	+		GFF4050	0.37	-0.5
4,062,654	+		GFF4050	0.45	-0.4
4,062,671	+		GFF4050	0.47	+0.0
4,062,700	+		GFF4050	0.48	-0.4
4,062,706	+		GFF4050	0.49	+1.2
4,062,714	+		GFF4050	0.49	+0.7
4,062,715	+		GFF4050	0.49	+0.2
4,062,725	+		GFF4050	0.50	-0.8
4,062,725	+		GFF4050	0.50	-0.4
4,062,737	+		GFF4050	0.51	-0.4
4,062,737	+		GFF4050	0.51	-0.9
4,062,768	+		GFF4050	0.53	-0.5
4,062,789	-		GFF4050	0.54	+0.4
4,063,073	+		GFF4050	0.72	-0.4
4,063,076	+		GFF4050	0.72	-0.7
4,063,163	+		GFF4050	0.77	-1.0
4,063,208	-		GFF4050	0.80	-0.6
4,063,237	-		GFF4050	0.82	-1.6
4,063,282	-		GFF4050	0.85	-1.1
4,063,299	+		GFF4050	0.86	-1.1
4,063,411	-				-0.9
4,063,430	+				-0.5
4,063,518	+				-1.0
4,063,526	-				-1.1
4,063,567	+				-1.0
4,063,572	+				-0.0
4,063,580	+				-1.5
4,063,627	+				-1.4
4,063,628	-				-0.5
4,063,635	-				-0.7
4,063,718	+				-0.7
4,063,727	+				-0.7
4,063,727	+				+1.3
4,063,728	+				-1.1
4,063,735	-				-0.7
4,063,735	-				-0.1
4,063,736	-				-1.4
4,063,736	-				-1.4
4,063,747	+				-1.0
4,063,747	+				-0.9
4,063,750	-				-0.4
4,063,752	+				-0.7
4,063,752	+				-0.8
4,063,757	+				-3.7
4,063,760	-				-1.4
4,063,764	+				+0.3
4,063,765	-				-1.9
4,063,772	-				-1.8
4,063,772	-				-0.1
4,063,772	-				-0.2
4,063,772	-				-1.7
4,063,777	-				-2.0
4,063,793	+				-2.1
4,063,803	-				+0.7
4,063,807	-				-0.4
4,063,811	-				-0.3
4,063,829	+				-0.6
4,063,835	+				-2.0
4,063,835	-				+0.5
4,063,838	-				+0.4
4,063,853	+				-1.0
4,063,855	+				-0.7
4,063,861	-				-1.3
4,063,865	+				-0.7
4,063,896	-				-0.5
4,063,936	+				+0.0
4,063,936	+				-1.2
4,063,936	+				-0.9
4,063,936	+				-0.4
4,063,936	+				-1.9
4,063,936	+				-1.5
4,063,936	+				-0.5
4,063,941	+		GFF4051	0.10	-2.3
4,063,944	-		GFF4051	0.10	-0.8
4,063,944	-		GFF4051	0.10	+0.4
4,063,944	-		GFF4051	0.10	+1.0
4,063,944	-		GFF4051	0.10	-1.7
4,063,944	-		GFF4051	0.10	-0.2
4,063,947	+		GFF4051	0.11	-0.9
4,063,947	+		GFF4051	0.11	-2.0
4,063,949	-		GFF4051	0.11	-1.1
4,063,954	-		GFF4051	0.11	-1.4
4,063,954	-		GFF4051	0.11	-0.8
4,063,955	-		GFF4051	0.11	-1.0
4,063,955	-		GFF4051	0.11	-0.7
4,063,957	+		GFF4051	0.11	-0.4
4,063,965	-		GFF4051	0.12	-0.5
4,063,987	-		GFF4051	0.14	-1.2
4,063,987	-		GFF4051	0.14	-0.8
4,064,049	+		GFF4051	0.18	-0.6
4,064,056	+		GFF4051	0.18	-1.1
4,064,064	-		GFF4051	0.19	-1.3
4,064,064	-		GFF4051	0.19	-0.6
4,064,064	-		GFF4051	0.19	-0.3
4,064,123	+		GFF4051	0.23	-0.9
4,064,158	+		GFF4051	0.26	-1.2
4,064,170	+		GFF4051	0.27	-0.4
4,064,178	-		GFF4051	0.27	-0.4
4,064,184	+		GFF4051	0.28	-0.4
4,064,189	+		GFF4051	0.28	-0.8
4,064,197	-		GFF4051	0.29	-0.4
4,064,218	-		GFF4051	0.30	-1.1
4,064,221	+		GFF4051	0.30	-1.2
4,064,221	+		GFF4051	0.30	-1.2
4,064,221	+		GFF4051	0.30	+1.0
4,064,221	+		GFF4051	0.30	+0.4
4,064,227	-		GFF4051	0.31	+0.6
4,064,229	-		GFF4051	0.31	-0.7
4,064,229	-		GFF4051	0.31	+0.8
4,064,264	+		GFF4051	0.33	+1.8
4,064,277	-		GFF4051	0.34	-0.4
4,064,277	-		GFF4051	0.34	-2.0
4,064,277	-		GFF4051	0.34	-1.9
4,064,279	-		GFF4051	0.34	-0.7
4,064,279	-		GFF4051	0.34	-0.9
4,064,281	+		GFF4051	0.35	-0.6
4,064,281	+		GFF4051	0.35	-0.1
4,064,289	-		GFF4051	0.35	-0.7
4,064,289	-		GFF4051	0.35	-1.9
4,064,302	+		GFF4051	0.36	-0.3
4,064,339	+		GFF4051	0.39	-1.7
4,064,347	-		GFF4051	0.39	+0.0
4,064,356	+		GFF4051	0.40	+1.2
4,064,364	-		GFF4051	0.41	-0.1
4,064,367	+		GFF4051	0.41	+0.2
4,064,372	+		GFF4051	0.41	-0.7
4,064,372	+		GFF4051	0.41	-0.2
4,064,380	-		GFF4051	0.42	-0.6
4,064,380	-		GFF4051	0.42	-0.8
4,064,389	+		GFF4051	0.42	-1.7
4,064,420	-		GFF4051	0.45	+0.7
4,064,482	+		GFF4051	0.49	+0.3
4,064,489	+		GFF4051	0.50	-2.0
4,064,503	-		GFF4051	0.51	-1.5
4,064,509	+		GFF4051	0.51	-0.6