Strain Fitness in Sphingobium sp. HT1-2 around GFF4017

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,041,348	-		GFF4014	0.25	-1.0
4,041,348	-		GFF4014	0.25	-0.7
4,041,348	-		GFF4014	0.25	+1.5
4,041,355	+		GFF4014	0.26	+0.6
4,041,355	+		GFF4014	0.26	-1.2
4,041,355	+		GFF4014	0.26	-1.7
4,041,355	+		GFF4014	0.26	-1.7
4,041,355	+		GFF4014	0.26	-0.8
4,041,355	+		GFF4014	0.26	-0.2
4,041,355	+		GFF4014	0.26	+0.0
4,041,355	+		GFF4014	0.26	+0.5
4,041,355	+		GFF4014	0.26	-0.5
4,041,355	+		GFF4014	0.26	-1.2
4,041,355	+		GFF4014	0.26	-1.0
4,041,355	+		GFF4014	0.26	-0.4
4,041,355	+		GFF4014	0.26	+1.7
4,041,355	+		GFF4014	0.26	+0.1
4,041,355	+		GFF4014	0.26	-0.3
4,041,360	+		GFF4014	0.27	-0.6
4,041,360	+		GFF4014	0.27	-1.1
4,041,363	-		GFF4014	0.28	+1.5
4,041,363	-		GFF4014	0.28	+0.4
4,041,363	-		GFF4014	0.28	+0.0
4,041,363	-		GFF4014	0.28	-0.6
4,041,363	-		GFF4014	0.28	-0.7
4,041,363	-		GFF4014	0.28	+0.2
4,041,363	-		GFF4014	0.28	-0.9
4,041,363	-		GFF4014	0.28	+0.3
4,041,363	-		GFF4014	0.28	+0.1
4,041,363	-		GFF4014	0.28	+0.1
4,041,363	-		GFF4014	0.28	+1.0
4,041,363	-		GFF4014	0.28	-0.8
4,041,363	-		GFF4014	0.28	+0.9
4,041,363	-		GFF4014	0.28	-1.5
4,041,363	-		GFF4014	0.28	-1.2
4,041,363	-		GFF4014	0.28	-0.5
4,041,380	+		GFF4014	0.31	-1.3
4,041,380	+		GFF4014	0.31	-1.7
4,041,387	+		GFF4014	0.32	-0.5
4,041,387	+		GFF4014	0.32	-0.3
4,041,388	-		GFF4014	0.32	-2.8
4,041,388	-		GFF4014	0.32	+1.7
4,041,388	-		GFF4014	0.32	-0.8
4,041,388	-		GFF4014	0.32	+0.8
4,041,388	-		GFF4014	0.32	+0.4
4,041,388	-		GFF4014	0.32	+1.7
4,041,453	+		GFF4014	0.43	-0.8
4,041,461	-		GFF4014	0.45	-1.6
4,041,476	+		GFF4014	0.47	-1.1
4,041,485	+		GFF4014	0.49	-1.0
4,041,493	-		GFF4014	0.50	-1.0
4,041,495	+		GFF4014	0.51	+0.2
4,041,495	+		GFF4014	0.51	-1.2
4,041,495	+		GFF4014	0.51	-1.8
4,041,495	+		GFF4014	0.51	+0.5
4,041,495	+		GFF4014	0.51	+0.2
4,041,497	+		GFF4014	0.51	-1.9
4,041,498	-		GFF4014	0.51	-0.3
4,041,503	-		GFF4014	0.52	+1.6
4,041,503	-		GFF4014	0.52	-0.7
4,041,503	-		GFF4014	0.52	-0.5
4,041,503	-		GFF4014	0.52	-1.0
4,041,503	-		GFF4014	0.52	-0.9
4,041,503	-		GFF4014	0.52	-1.0
4,041,503	-		GFF4014	0.52	-0.0
4,041,505	+		GFF4014	0.52	-2.0
4,041,530	-		GFF4014	0.57	+1.7
4,041,538	-		GFF4014	0.58	-1.0
4,041,578	+		GFF4014	0.65	-1.2
4,041,670	+		GFF4014	0.81	-0.7
4,041,670	+		GFF4014	0.81	+0.5
4,041,674	+		GFF4014	0.82	+0.1
4,041,675	+		GFF4014	0.82	-0.8
4,041,675	+		GFF4014	0.82	+0.0
4,041,680	+		GFF4014	0.83	+0.2
4,041,708	+		GFF4014	0.88	+0.3
4,041,750	+				-0.3
4,041,750	+				+0.4
4,041,750	+				-1.3
4,041,750	+				-0.4
4,041,750	+				-1.8
4,041,755	+				-0.6
4,041,755	+				+0.4
4,041,757	+				+0.4
4,041,760	+				-0.3
4,041,760	+				-0.4
4,041,841	+		GFF4015	0.35	-1.4
4,041,841	+		GFF4015	0.35	+0.1
4,041,843	+		GFF4015	0.37	-0.8
4,041,851	-		GFF4015	0.41	-1.3
4,041,851	-		GFF4015	0.41	+0.4
4,041,882	+		GFF4015	0.58	-0.7
4,041,882	+		GFF4015	0.58	-0.9
4,041,890	-		GFF4015	0.62	-1.0
4,041,890	-		GFF4015	0.62	-0.2
4,041,892	+		GFF4015	0.63	-0.0
4,041,908	+		GFF4015	0.72	-0.4
4,041,908	+		GFF4015	0.72	+1.1
4,041,914	-		GFF4015	0.75	+0.3
4,041,927	-		GFF4015	0.82	-0.1
4,041,930	+		GFF4015	0.83	+0.2
4,041,937	+		GFF4015	0.87	+0.3
4,041,945	-				+0.9
4,041,958	+				-0.4
4,041,966	-				+0.6
4,041,973	+				+0.8
4,041,973	+				-1.7
4,041,973	+				+1.3
4,041,973	+				+0.4
4,041,973	+				-0.5
4,041,973	+				-1.1
4,041,973	+				-1.9
4,041,973	+				-0.7
4,041,973	+				-1.5
4,041,973	+				-1.9
4,041,973	+				-0.5
4,041,975	+				-1.2
4,041,981	-				-0.1
4,041,981	-				+1.0
4,041,981	-				-0.3
4,041,985	+		GFF4016	0.11	+0.5
4,041,985	+		GFF4016	0.11	-0.0
4,041,985	+		GFF4016	0.11	+1.1
4,041,985	+		GFF4016	0.11	-0.0
4,041,985	+		GFF4016	0.11	+0.1
4,041,985	+		GFF4016	0.11	+0.2
4,041,988	-		GFF4016	0.12	-0.9
4,041,990	+		GFF4016	0.13	-1.5
4,041,990	+		GFF4016	0.13	-0.5
4,041,990	+		GFF4016	0.13	-0.2
4,041,990	+		GFF4016	0.13	-0.6
4,041,993	-		GFF4016	0.15	+0.5
4,041,993	-		GFF4016	0.15	+0.9
4,041,993	-		GFF4016	0.15	+1.7
4,041,993	-		GFF4016	0.15	+0.1
4,041,995	+		GFF4016	0.16	+0.2
4,042,041	-		GFF4016	0.36	-0.5
4,042,090	-		GFF4016	0.58	+0.5
4,042,092	-		GFF4016	0.59	-0.2
4,042,097	-		GFF4016	0.61	-1.6
4,042,097	-		GFF4016	0.61	-1.0
4,042,103	-		GFF4016	0.64	+0.2
4,042,103	-		GFF4016	0.64	-1.0
4,042,118	+		GFF4016	0.70	-0.4
4,042,130	+		GFF4016	0.76	+0.2
4,042,136	-		GFF4016	0.78	-0.7
4,042,136	-		GFF4016	0.78	-0.8
4,042,149	+		GFF4016	0.84	+0.4
4,042,167	-				-0.3
4,042,179	+				-2.1
4,042,181	+				-0.6
4,042,181	+				-1.2
4,042,186	+				+1.1
4,042,187	-				+0.4
4,042,189	-				-0.0
4,042,189	-				-1.0
4,042,194	+				-1.3
4,042,220	+				+0.6
4,042,241	+				-0.3
4,042,241	+				+0.7
4,042,241	+				-1.4
4,042,241	+				+0.8
4,042,243	+				+0.5
4,042,250	-				-0.6
4,042,258	+				-0.5
4,042,258	+				-1.2
4,042,265	-				-1.0
4,042,265	-				-0.6
4,042,287	-				+0.2
4,042,294	-				-1.6
4,042,323	-				-0.9
4,042,328	+				+0.4
4,042,336	-				-0.3
4,042,336	-				-0.6
4,042,336	-				-0.5
4,042,336	-				+0.5
4,042,336	-				-0.2
4,042,336	-				-1.2
4,042,336	-				-0.3
4,042,336	-				-0.3
4,042,336	-				-0.8
4,042,338	+				-0.3
4,042,346	-				-1.2
4,042,362	+				-0.5
4,042,380	-				-0.3
4,042,380	-				+0.3
4,042,380	-				-0.9
4,042,381	+				-0.7
4,042,400	-				-1.4
4,042,423	-				-0.7
4,042,443	-				-1.6
4,042,445	+				-1.9
4,042,453	-				+0.0
4,042,453	-				-0.7
4,042,479	-		GFF4017	0.10	-0.7
4,042,481	+		GFF4017	0.10	+0.0
4,042,481	+		GFF4017	0.10	+0.5
4,042,489	-		GFF4017	0.11	+0.2
4,042,523	+		GFF4017	0.13	-0.3
4,042,539	-		GFF4017	0.14	+1.1
4,042,540	-		GFF4017	0.15	-0.2
4,042,565	+		GFF4017	0.16	-0.9
4,042,572	+		GFF4017	0.17	+0.1
4,042,580	-		GFF4017	0.18	-1.1
4,042,581	+		GFF4017	0.18	-0.3
4,042,581	+		GFF4017	0.18	-0.1
4,042,581	+		GFF4017	0.18	-1.0
4,042,584	-		GFF4017	0.18	-1.3
4,042,589	-		GFF4017	0.18	+1.0
4,042,595	+		GFF4017	0.19	-0.6
4,042,603	-		GFF4017	0.19	+0.2
4,042,603	-		GFF4017	0.19	-0.7
4,042,612	+		GFF4017	0.20	-2.0
4,042,620	-		GFF4017	0.21	-1.0
4,042,620	-		GFF4017	0.21	+0.6
4,042,631	+		GFF4017	0.21	-0.0
4,042,631	+		GFF4017	0.21	+0.0
4,042,631	+		GFF4017	0.21	-0.2
4,042,639	-		GFF4017	0.22	-0.7
4,042,641	+		GFF4017	0.22	-1.0
4,042,649	-		GFF4017	0.23	+1.1
4,042,649	-		GFF4017	0.23	-0.5
4,042,706	+		GFF4017	0.27	-1.1
4,042,706	+		GFF4017	0.27	-1.4
4,042,714	-		GFF4017	0.28	-0.5
4,042,714	-		GFF4017	0.28	-0.4
4,042,743	+		GFF4017	0.30	-0.3
4,042,743	+		GFF4017	0.30	+0.2
4,042,743	+		GFF4017	0.30	+0.1
4,042,745	+		GFF4017	0.30	+0.1
4,042,748	+		GFF4017	0.30	-0.5
4,042,751	-		GFF4017	0.30	-1.6
4,042,756	+		GFF4017	0.31	+0.3
4,042,756	+		GFF4017	0.31	+1.7
4,042,756	-		GFF4017	0.31	-1.3
4,042,756	-		GFF4017	0.31	+1.0
4,042,756	-		GFF4017	0.31	-0.0
4,042,756	-		GFF4017	0.31	-0.9
4,042,764	-		GFF4017	0.31	-0.2
4,042,769	-		GFF4017	0.32	-2.5
4,042,771	-		GFF4017	0.32	-0.6
4,042,778	+		GFF4017	0.32	-1.7
4,042,837	-		GFF4017	0.37	-1.3
4,042,837	-		GFF4017	0.37	-0.7
4,042,844	+		GFF4017	0.37	-1.0
4,042,851	+		GFF4017	0.38	-0.5
4,042,868	+		GFF4017	0.39	+0.1
4,042,868	+		GFF4017	0.39	-1.5
4,042,868	+		GFF4017	0.39	-1.6
4,042,873	+		GFF4017	0.39	-1.9
4,042,876	-		GFF4017	0.40	-0.9
4,042,881	-		GFF4017	0.40	-0.9
4,042,891	+		GFF4017	0.41	+0.4
4,042,904	+		GFF4017	0.42	+0.4
4,042,926	+		GFF4017	0.43	-0.9
4,042,930	+		GFF4017	0.44	-1.9
4,042,939	+		GFF4017	0.44	+0.5
4,042,939	+		GFF4017	0.44	-0.9
4,042,949	+		GFF4017	0.45	+1.3
4,042,949	+		GFF4017	0.45	+0.8
4,042,957	+		GFF4017	0.46	-1.0
4,042,966	+		GFF4017	0.46	-1.6
4,042,973	-		GFF4017	0.47	-2.0
4,042,974	-		GFF4017	0.47	+0.1
4,043,010	+		GFF4017	0.50	-0.5
4,043,020	+		GFF4017	0.50	-1.3
4,043,042	+		GFF4017	0.52	+1.3
4,043,042	+		GFF4017	0.52	-0.1
4,043,049	+		GFF4017	0.53	+0.5
4,043,062	+		GFF4017	0.54	+0.0
4,043,062	+		GFF4017	0.54	-1.3
4,043,062	+		GFF4017	0.54	-1.2
4,043,064	+		GFF4017	0.54	+0.1
4,043,064	+		GFF4017	0.54	-0.9
4,043,064	+		GFF4017	0.54	-0.3
4,043,064	+		GFF4017	0.54	-0.6
4,043,064	+		GFF4017	0.54	-2.1
4,043,074	+		GFF4017	0.54	-0.5
4,043,074	+		GFF4017	0.54	-0.9
4,043,074	+		GFF4017	0.54	-1.0
4,043,074	+		GFF4017	0.54	+0.1
4,043,074	+		GFF4017	0.54	-0.3
4,043,074	+		GFF4017	0.54	-1.0
4,043,074	+		GFF4017	0.54	-0.9
4,043,074	+		GFF4017	0.54	-0.7
4,043,074	+		GFF4017	0.54	-0.8
4,043,074	+		GFF4017	0.54	-1.0
4,043,074	+		GFF4017	0.54	-1.0
4,043,079	+		GFF4017	0.55	-1.7
4,043,079	+		GFF4017	0.55	-0.5
4,043,082	-		GFF4017	0.55	-1.6
4,043,082	-		GFF4017	0.55	-0.3
4,043,082	-		GFF4017	0.55	-0.7
4,043,082	-		GFF4017	0.55	-0.0
4,043,082	-		GFF4017	0.55	-0.7
4,043,082	-		GFF4017	0.55	-0.3
4,043,082	-		GFF4017	0.55	-1.0
4,043,082	-		GFF4017	0.55	-0.8
4,043,082	-		GFF4017	0.55	-0.2
4,043,082	-		GFF4017	0.55	+0.4
4,043,082	-		GFF4017	0.55	-1.8
4,043,082	-		GFF4017	0.55	-1.6
4,043,082	-		GFF4017	0.55	+0.8
4,043,082	-		GFF4017	0.55	-0.7
4,043,082	-		GFF4017	0.55	-1.2
4,043,082	-		GFF4017	0.55	-1.0
4,043,082	-		GFF4017	0.55	+0.2
4,043,092	+		GFF4017	0.56	-0.3
4,043,117	+		GFF4017	0.58	-0.2
4,043,117	+		GFF4017	0.58	+0.3
4,043,117	+		GFF4017	0.58	-1.1
4,043,117	+		GFF4017	0.58	+0.8
4,043,117	+		GFF4017	0.58	-0.4
4,043,117	+		GFF4017	0.58	-0.8
4,043,117	+		GFF4017	0.58	+0.5
4,043,117	+		GFF4017	0.58	+0.3
4,043,117	+		GFF4017	0.58	+0.1
4,043,117	+		GFF4017	0.58	+0.3
4,043,117	+		GFF4017	0.58	+0.5
4,043,117	+		GFF4017	0.58	+0.1
4,043,117	+		GFF4017	0.58	+0.4
4,043,117	+		GFF4017	0.58	-0.4
4,043,117	+		GFF4017	0.58	-1.5
4,043,117	+		GFF4017	0.58	-0.9
4,043,117	+		GFF4017	0.58	-1.0
4,043,117	+		GFF4017	0.58	-1.0
4,043,117	+		GFF4017	0.58	+0.0
4,043,117	+		GFF4017	0.58	-0.6
4,043,117	+		GFF4017	0.58	-1.3
4,043,117	+		GFF4017	0.58	-0.9
4,043,117	+		GFF4017	0.58	-0.7
4,043,119	+		GFF4017	0.58	+0.1
4,043,125	-		GFF4017	0.58	+1.1
4,043,125	-		GFF4017	0.58	-0.2
4,043,125	-		GFF4017	0.58	-1.8
4,043,125	-		GFF4017	0.58	-0.1
4,043,125	-		GFF4017	0.58	-0.5
4,043,125	-		GFF4017	0.58	-0.4
4,043,125	-		GFF4017	0.58	-0.3
4,043,125	-		GFF4017	0.58	-0.8
4,043,125	-		GFF4017	0.58	-1.2
4,043,125	-		GFF4017	0.58	-1.3
4,043,125	-		GFF4017	0.58	-1.6
4,043,125	-		GFF4017	0.58	-0.5
4,043,125	-		GFF4017	0.58	-0.2
4,043,125	-		GFF4017	0.58	-0.1
4,043,125	-		GFF4017	0.58	-1.0
4,043,125	-		GFF4017	0.58	-0.6
4,043,125	-		GFF4017	0.58	+0.7
4,043,125	-		GFF4017	0.58	-1.8
4,043,125	-		GFF4017	0.58	-1.8
4,043,125	-		GFF4017	0.58	-1.0
4,043,125	-		GFF4017	0.58	+0.7
4,043,125	-		GFF4017	0.58	-0.3
4,043,125	-		GFF4017	0.58	-0.3
4,043,125	-		GFF4017	0.58	-0.0
4,043,125	-		GFF4017	0.58	+0.3
4,043,125	-		GFF4017	0.58	+0.4
4,043,127	-		GFF4017	0.58	-1.0
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