Strain Fitness in Sphingobium sp. HT1-2 around GFF3842

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,880,270	+		GFF3841	0.61	+0.2
3,880,308	-		GFF3841	0.63	-0.7
3,880,314	-		GFF3841	0.63	-0.3
3,880,314	-		GFF3841	0.63	-2.3
3,880,324	-		GFF3841	0.64	-0.3
3,880,326	-		GFF3841	0.64	-0.5
3,880,329	-		GFF3841	0.64	-1.7
3,880,342	+		GFF3841	0.64	+0.3
3,880,342	+		GFF3841	0.64	-0.2
3,880,342	+		GFF3841	0.64	-0.6
3,880,348	-		GFF3841	0.65	-1.0
3,880,350	-		GFF3841	0.65	-0.6
3,880,367	-		GFF3841	0.65	-0.6
3,880,379	+		GFF3841	0.66	-0.4
3,880,384	+		GFF3841	0.66	-0.8
3,880,384	+		GFF3841	0.66	-0.8
3,880,392	-		GFF3841	0.66	-0.4
3,880,392	-		GFF3841	0.66	-2.2
3,880,392	-		GFF3841	0.66	+0.2
3,880,392	-		GFF3841	0.66	-1.3
3,880,393	-		GFF3841	0.66	+0.5
3,880,396	+		GFF3841	0.66	+0.3
3,880,397	-		GFF3841	0.67	-0.8
3,880,425	+		GFF3841	0.68	-1.5
3,880,425	-		GFF3841	0.68	-1.3
3,880,428	-		GFF3841	0.68	-0.7
3,880,447	-		GFF3841	0.69	-0.5
3,880,449	+		GFF3841	0.69	-1.3
3,880,449	+		GFF3841	0.69	-0.5
3,880,449	+		GFF3841	0.69	-0.9
3,880,449	+		GFF3841	0.69	-0.2
3,880,449	+		GFF3841	0.69	-0.8
3,880,449	+		GFF3841	0.69	-0.9
3,880,457	-		GFF3841	0.69	-0.6
3,880,457	-		GFF3841	0.69	-1.4
3,880,457	-		GFF3841	0.69	+0.2
3,880,484	+		GFF3841	0.70	-0.2
3,880,509	+		GFF3841	0.71	-1.2
3,880,512	+		GFF3841	0.71	+1.2
3,880,512	+		GFF3841	0.71	-0.6
3,880,513	+		GFF3841	0.71	-0.5
3,880,517	-		GFF3841	0.71	+0.8
3,880,523	+		GFF3841	0.72	-0.8
3,880,538	-		GFF3841	0.72	+0.3
3,880,538	-		GFF3841	0.72	+0.0
3,880,549	-		GFF3841	0.73	-0.7
3,880,552	+		GFF3841	0.73	-0.0
3,880,556	-		GFF3841	0.73	-1.8
3,880,558	+		GFF3841	0.73	-0.0
3,880,558	+		GFF3841	0.73	-0.6
3,880,610	-		GFF3841	0.75	+0.2
3,880,618	-		GFF3841	0.75	-1.1
3,880,623	+		GFF3841	0.76	-0.7
3,880,626	-		GFF3841	0.76	-2.1
3,880,633	+		GFF3841	0.76	+0.5
3,880,645	-		GFF3841	0.76	-0.4
3,880,645	-		GFF3841	0.76	-2.7
3,880,645	-		GFF3841	0.76	+0.2
3,880,645	-		GFF3841	0.76	-0.4
3,880,647	+		GFF3841	0.76	+0.0
3,880,654	-		GFF3841	0.77	-0.4
3,880,661	+		GFF3841	0.77	-0.1
3,880,661	+		GFF3841	0.77	-0.3
3,880,661	+		GFF3841	0.77	-1.4
3,880,662	-		GFF3841	0.77	-1.1
3,880,662	-		GFF3841	0.77	+1.2
3,880,664	-		GFF3841	0.77	-0.4
3,880,669	-		GFF3841	0.77	-0.2
3,880,669	-		GFF3841	0.77	-0.9
3,880,669	-		GFF3841	0.77	-0.8
3,880,669	-		GFF3841	0.77	+0.4
3,880,669	-		GFF3841	0.77	-0.4
3,880,669	-		GFF3841	0.77	-1.5
3,880,669	-		GFF3841	0.77	-1.2
3,880,681	-		GFF3841	0.78	+0.1
3,880,681	-		GFF3841	0.78	+0.4
3,880,685	+		GFF3841	0.78	+0.2
3,880,685	+		GFF3841	0.78	-0.5
3,880,698	+		GFF3841	0.79	-0.5
3,880,719	+		GFF3841	0.79	-1.5
3,880,719	+		GFF3841	0.79	+0.5
3,880,731	+		GFF3841	0.80	-0.3
3,880,783	+		GFF3841	0.82	-0.0
3,880,783	+		GFF3841	0.82	-0.8
3,880,783	+		GFF3841	0.82	-0.1
3,880,791	-		GFF3841	0.82	-0.6
3,880,796	-		GFF3841	0.82	+0.9
3,880,799	-		GFF3841	0.83	+0.9
3,880,824	-		GFF3841	0.84	-0.7
3,880,829	+		GFF3841	0.84	-1.4
3,880,829	+		GFF3841	0.84	-1.9
3,880,829	+		GFF3841	0.84	+0.2
3,880,829	+		GFF3841	0.84	-1.2
3,880,829	+		GFF3841	0.84	-0.5
3,880,829	+		GFF3841	0.84	-0.8
3,880,829	+		GFF3841	0.84	-0.6
3,880,829	+		GFF3841	0.84	+0.1
3,880,829	+		GFF3841	0.84	-0.4
3,880,829	+		GFF3841	0.84	-0.9
3,880,829	+		GFF3841	0.84	+0.6
3,880,829	+		GFF3841	0.84	-2.0
3,880,829	+		GFF3841	0.84	-1.3
3,880,829	+		GFF3841	0.84	-1.8
3,880,829	+		GFF3841	0.84	+1.7
3,880,837	-		GFF3841	0.84	-1.5
3,880,837	-		GFF3841	0.84	+0.5
3,880,837	-		GFF3841	0.84	+0.6
3,880,837	-		GFF3841	0.84	-1.1
3,880,837	-		GFF3841	0.84	+1.1
3,880,837	-		GFF3841	0.84	+0.6
3,880,837	-		GFF3841	0.84	+0.3
3,880,837	-		GFF3841	0.84	-0.1
3,880,837	-		GFF3841	0.84	-1.7
3,880,837	-		GFF3841	0.84	+0.6
3,880,861	+		GFF3841	0.85	+0.5
3,880,863	-		GFF3841	0.85	+0.2
3,880,907	+		GFF3841	0.87	+0.5
3,880,907	+		GFF3841	0.87	-1.5
3,880,915	-		GFF3841	0.87	-1.9
3,880,928	-		GFF3841	0.88	-1.8
3,880,931	+		GFF3841	0.88	-0.6
3,880,931	+		GFF3841	0.88	-1.9
3,880,978	-		GFF3841	0.90	-0.4
3,880,989	+				-1.6
3,880,989	+				-0.4
3,880,997	-				-1.3
3,881,042	+				+0.2
3,881,050	-				-1.0
3,881,050	-				-0.1
3,881,051	+				-0.6
3,881,059	-				-0.9
3,881,059	-				-0.3
3,881,059	-				-0.8
3,881,059	-				-1.7
3,881,059	-				-0.4
3,881,066	+				-1.5
3,881,073	-				-1.1
3,881,103	+				-1.2
3,881,106	-				-1.2
3,881,175	+				+0.5
3,881,183	-				-0.8
3,881,191	+				-2.3
3,881,196	+				-1.0
3,881,199	-				-1.5
3,881,249	+				+0.6
3,881,249	+				+0.6
3,881,249	+				-1.4
3,881,249	+				-0.8
3,881,257	-				-0.2
3,881,257	-				+0.4
3,881,257	-				-0.2
3,881,257	-				-0.2
3,881,257	-				-1.6
3,881,257	-				-1.9
3,881,257	-				+0.2
3,881,257	-				-0.8
3,881,259	+				-0.1
3,881,267	-				-0.2
3,881,267	-				-1.0
3,881,272	+				-0.3
3,881,275	-				-0.3
3,881,294	-				-0.6
3,881,320	+				+0.3
3,881,346	+		GFF3842	0.12	-1.0
3,881,360	-		GFF3842	0.14	-1.3
3,881,384	+		GFF3842	0.18	-0.3
3,881,403	+		GFF3842	0.21	-1.2
3,881,411	-		GFF3842	0.22	+0.5
3,881,459	-		GFF3842	0.29	+1.6
3,881,465	+		GFF3842	0.30	-0.1
3,881,473	-		GFF3842	0.31	-0.1
3,881,490	-		GFF3842	0.33	+0.1
3,881,490	-		GFF3842	0.33	+0.3
3,881,510	+		GFF3842	0.36	-1.0
3,881,510	+		GFF3842	0.36	+0.1
3,881,510	+		GFF3842	0.36	-0.3
3,881,510	+		GFF3842	0.36	-0.3
3,881,518	-		GFF3842	0.37	-1.0
3,881,528	-		GFF3842	0.39	+0.6
3,881,528	-		GFF3842	0.39	+0.7
3,881,532	+		GFF3842	0.39	+1.4
3,881,544	+		GFF3842	0.41	-1.0
3,881,560	+		GFF3842	0.43	-0.4
3,881,560	+		GFF3842	0.43	+0.5
3,881,570	+		GFF3842	0.45	-0.0
3,881,570	+		GFF3842	0.45	-0.2
3,881,576	+		GFF3842	0.46	-0.6
3,881,576	+		GFF3842	0.46	-1.1
3,881,578	-		GFF3842	0.46	-0.3
3,881,584	-		GFF3842	0.47	-1.1
3,881,590	-		GFF3842	0.48	+0.3
3,881,594	+		GFF3842	0.48	-0.3
3,881,600	+		GFF3842	0.49	+0.3
3,881,600	+		GFF3842	0.49	+0.5
3,881,606	+		GFF3842	0.50	-2.3
3,881,606	+		GFF3842	0.50	+0.5
3,881,609	+		GFF3842	0.50	+0.2
3,881,612	-		GFF3842	0.51	-0.6
3,881,614	+		GFF3842	0.51	-0.3
3,881,614	-		GFF3842	0.51	-0.7
3,881,614	-		GFF3842	0.51	-0.7
3,881,615	+		GFF3842	0.51	-0.7
3,881,619	+		GFF3842	0.52	+0.3
3,881,619	+		GFF3842	0.52	-2.5
3,881,627	-		GFF3842	0.53	-1.1
3,881,642	+		GFF3842	0.55	-0.6
3,881,661	+		GFF3842	0.58	+0.2
3,881,661	+		GFF3842	0.58	+1.2
3,881,661	+		GFF3842	0.58	+0.7
3,881,661	+		GFF3842	0.58	-0.9
3,881,661	+		GFF3842	0.58	-0.5
3,881,661	+		GFF3842	0.58	-0.0
3,881,661	+		GFF3842	0.58	-0.6
3,881,669	-		GFF3842	0.59	-1.7
3,881,669	-		GFF3842	0.59	-0.1
3,881,669	-		GFF3842	0.59	+0.3
3,881,677	+		GFF3842	0.60	-0.5
3,881,679	-		GFF3842	0.60	+0.3
3,881,683	+		GFF3842	0.61	-2.3
3,881,683	+		GFF3842	0.61	+0.9
3,881,683	+		GFF3842	0.61	-0.7
3,881,691	-		GFF3842	0.62	+0.3
3,881,691	-		GFF3842	0.62	+0.0
3,881,694	-		GFF3842	0.63	-1.5
3,881,712	+		GFF3842	0.65	-2.0
3,881,714	-		GFF3842	0.66	-0.0
3,881,716	+		GFF3842	0.66	+0.2
3,881,717	+		GFF3842	0.66	-1.4
3,881,725	-		GFF3842	0.67	+2.2
3,881,725	-		GFF3842	0.67	-0.7
3,881,727	+		GFF3842	0.67	+0.4
3,881,745	+		GFF3842	0.70	-2.0
3,881,762	-		GFF3842	0.72	-0.3
3,881,782	-		GFF3842	0.75	-1.0
3,881,784	-		GFF3842	0.76	-1.5
3,881,797	+		GFF3842	0.77	-1.4
3,881,802	-		GFF3842	0.78	-0.8
3,881,857	-		GFF3842	0.86	+0.6
3,881,887	+				-1.3
3,881,887	+				-1.2
3,881,887	+				+1.4
3,881,887	+				-0.3
3,881,887	+				+0.7
3,881,887	+				-1.4
3,881,887	+				-1.4
3,881,895	-				-1.1
3,881,896	-				-1.0
3,881,896	-				-1.7
3,881,911	-				+0.0
3,881,935	+				-1.4
3,881,935	+				-0.7
3,881,938	-				-0.4
3,881,940	+				+0.0
3,881,943	-				+0.5
3,881,947	+				-0.5
3,881,949	-				-0.5
3,881,955	-				-0.6
3,881,983	+				-2.1
3,881,990	-				-0.2
3,882,007	+				-1.0
3,882,007	+				+0.3
3,882,010	-				-1.0
3,882,010	-				+0.7
3,882,012	-				-1.3
3,882,015	-				-1.5
3,882,015	-				-1.2
3,882,015	-				-0.3
3,882,015	-				+1.0
3,882,015	-				-0.5
3,882,018	+				+0.6
3,882,019	-				+0.6
3,882,024	-				+0.8
3,882,038	+				-0.9
3,882,038	+				+1.3
3,882,038	+				-1.2
3,882,038	+				+0.7
3,882,046	-				-1.1
3,882,046	-				-1.4
3,882,046	-				-1.8
3,882,070	+				+0.2
3,882,075	+				-0.1
3,882,083	-				-1.0
3,882,127	+		GFF3843	0.12	-0.5
3,882,135	+		GFF3843	0.13	-0.5
3,882,135	+		GFF3843	0.13	-1.0
3,882,135	+		GFF3843	0.13	-0.8
3,882,137	+		GFF3843	0.13	-1.5
3,882,137	+		GFF3843	0.13	-0.3
3,882,143	-		GFF3843	0.14	-1.9
3,882,143	-		GFF3843	0.14	-1.0
3,882,145	+		GFF3843	0.14	+1.8
3,882,145	-		GFF3843	0.14	-0.0
3,882,145	-		GFF3843	0.14	-3.1
3,882,183	-		GFF3843	0.17	-0.2
3,882,196	+		GFF3843	0.18	-2.0
3,882,206	+		GFF3843	0.18	-0.4
3,882,206	+		GFF3843	0.18	+0.4
3,882,209	-		GFF3843	0.19	+0.0
3,882,214	-		GFF3843	0.19	-1.6
3,882,214	-		GFF3843	0.19	-0.1
3,882,216	+		GFF3843	0.19	-0.2
3,882,216	+		GFF3843	0.19	+0.2
3,882,216	+		GFF3843	0.19	+0.2
3,882,216	+		GFF3843	0.19	-1.8
3,882,216	+		GFF3843	0.19	+0.5
3,882,224	-		GFF3843	0.20	+0.2
3,882,224	-		GFF3843	0.20	+0.3
3,882,241	+		GFF3843	0.21	+0.1
3,882,243	-		GFF3843	0.21	-1.5
3,882,258	+		GFF3843	0.22	-0.4
3,882,259	-		GFF3843	0.22	-1.5
3,882,277	+		GFF3843	0.24	-0.6
3,882,285	-		GFF3843	0.24	+0.8
3,882,285	-		GFF3843	0.24	-0.4
3,882,360	+		GFF3843	0.30	-0.2
3,882,384	-		GFF3843	0.32	-0.4
3,882,422	+		GFF3843	0.35	-1.4
3,882,422	+		GFF3843	0.35	+1.9
3,882,454	-		GFF3843	0.37	-1.3
3,882,468	-		GFF3843	0.38	+0.6
3,882,480	+		GFF3843	0.39	-0.8
3,882,487	-		GFF3843	0.40	-0.1
3,882,489	+		GFF3843	0.40	-0.2
3,882,489	+		GFF3843	0.40	-0.5
3,882,489	+		GFF3843	0.40	+1.0
3,882,497	-		GFF3843	0.40	-1.1
3,882,497	-		GFF3843	0.40	-0.3
3,882,521	+		GFF3843	0.42	+1.0
3,882,521	+		GFF3843	0.42	+0.2
3,882,521	+		GFF3843	0.42	-1.7
3,882,522	+		GFF3843	0.42	+0.9
3,882,529	-		GFF3843	0.43	+0.5
3,882,529	-		GFF3843	0.43	-0.6
3,882,529	-		GFF3843	0.43	-1.4
3,882,530	+		GFF3843	0.43	-2.1
3,882,531	+		GFF3843	0.43	+1.5
3,882,531	+		GFF3843	0.43	+1.7
3,882,539	-		GFF3843	0.44	+0.2
3,882,539	-		GFF3843	0.44	-0.5
3,882,546	+		GFF3843	0.44	-1.2
3,882,551	+		GFF3843	0.45	-0.4
3,882,560	-		GFF3843	0.45	-1.3
3,882,565	-		GFF3843	0.46	-0.6
3,882,565	-		GFF3843	0.46	+0.6
3,882,569	-		GFF3843	0.46	+0.3
3,882,569	-		GFF3843	0.46	-0.7
3,882,591	-		GFF3843	0.48	-0.6
3,882,601	-		GFF3843	0.48	+1.1
3,882,607	+		GFF3843	0.49	-0.7
3,882,607	+		GFF3843	0.49	+0.6
3,882,607	+		GFF3843	0.49	-0.8
3,882,607	+		GFF3843	0.49	-0.7
3,882,614	-		GFF3843	0.49	-0.0
3,882,615	-		GFF3843	0.49	-1.0
3,882,629	+		GFF3843	0.50	+0.6
3,882,629	+		GFF3843	0.50	-0.3
3,882,632	-		GFF3843	0.51	-0.8
3,882,632	-		GFF3843	0.51	-0.3
3,882,634	+		GFF3843	0.51	-0.8
3,882,634	+		GFF3843	0.51	-0.0
3,882,637	-		GFF3843	0.51	+1.7
3,882,640	-		GFF3843	0.51	+0.1
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