Strain Fitness in Sphingobium sp. HT1-2 around GFF3814

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,855,121	-		GFF3813	0.66	-0.7
3,855,136	+		GFF3813	0.66	+0.4
3,855,141	+		GFF3813	0.67	-0.9
3,855,141	+		GFF3813	0.67	-0.9
3,855,149	-		GFF3813	0.67	-2.0
3,855,149	-		GFF3813	0.67	-0.7
3,855,149	-		GFF3813	0.67	+1.3
3,855,155	-		GFF3813	0.67	-1.2
3,855,172	+		GFF3813	0.68	-1.1
3,855,172	+		GFF3813	0.68	-0.8
3,855,172	+		GFF3813	0.68	+0.0
3,855,180	-		GFF3813	0.68	-1.0
3,855,182	+		GFF3813	0.68	+0.7
3,855,190	-		GFF3813	0.68	-0.2
3,855,235	+		GFF3813	0.70	+0.2
3,855,235	+		GFF3813	0.70	+1.4
3,855,235	+		GFF3813	0.70	-1.9
3,855,243	-		GFF3813	0.70	+1.4
3,855,243	-		GFF3813	0.70	+1.7
3,855,291	+		GFF3813	0.72	-0.8
3,855,297	-		GFF3813	0.72	-1.1
3,855,299	+		GFF3813	0.72	-0.9
3,855,299	+		GFF3813	0.72	-0.6
3,855,307	-		GFF3813	0.73	-0.6
3,855,307	-		GFF3813	0.73	-0.7
3,855,336	-		GFF3813	0.74	-1.3
3,855,343	+		GFF3813	0.74	-0.4
3,855,351	+		GFF3813	0.74	-0.7
3,855,351	+		GFF3813	0.74	+0.3
3,855,370	+		GFF3813	0.75	-0.4
3,855,418	+		GFF3813	0.77	-1.3
3,855,418	-		GFF3813	0.77	-0.9
3,855,419	-		GFF3813	0.77	-1.3
3,855,422	+		GFF3813	0.77	+0.4
3,855,436	+		GFF3813	0.77	-0.1
3,855,436	-		GFF3813	0.77	-0.9
3,855,438	+		GFF3813	0.78	-0.7
3,855,441	-		GFF3813	0.78	-0.9
3,855,444	-		GFF3813	0.78	-0.3
3,855,456	-		GFF3813	0.78	-1.0
3,855,461	-		GFF3813	0.78	-0.7
3,855,461	-		GFF3813	0.78	-1.3
3,855,464	+		GFF3813	0.78	-0.2
3,855,491	+		GFF3813	0.79	-1.0
3,855,493	+		GFF3813	0.80	-0.7
3,855,493	+		GFF3813	0.80	-0.1
3,855,493	+		GFF3813	0.80	+0.5
3,855,499	-		GFF3813	0.80	+0.9
3,855,501	-		GFF3813	0.80	-1.3
3,855,503	+		GFF3813	0.80	-0.5
3,855,525	+		GFF3813	0.81	-1.1
3,855,532	+		GFF3813	0.81	-0.1
3,855,540	+		GFF3813	0.81	-0.4
3,855,540	-		GFF3813	0.81	-0.3
3,855,540	-		GFF3813	0.81	-1.6
3,855,541	+		GFF3813	0.81	-0.3
3,855,542	+		GFF3813	0.81	-0.5
3,855,542	+		GFF3813	0.81	-1.4
3,855,542	+		GFF3813	0.81	-1.4
3,855,545	-		GFF3813	0.81	-0.6
3,855,550	-		GFF3813	0.82	-0.2
3,855,550	-		GFF3813	0.82	-1.1
3,855,550	-		GFF3813	0.82	-0.8
3,855,550	-		GFF3813	0.82	-0.7
3,855,552	+		GFF3813	0.82	+1.8
3,855,564	+		GFF3813	0.82	-0.4
3,855,594	+		GFF3813	0.83	+0.1
3,855,602	-		GFF3813	0.84	+0.3
3,855,623	+		GFF3813	0.84	-0.8
3,855,648	-		GFF3813	0.85	-1.6
3,855,650	+		GFF3813	0.85	-0.7
3,855,653	+		GFF3813	0.86	-1.0
3,855,662	+		GFF3813	0.86	-0.3
3,855,662	+		GFF3813	0.86	-1.6
3,855,670	-		GFF3813	0.86	+0.6
3,855,670	-		GFF3813	0.86	-0.9
3,855,670	-		GFF3813	0.86	-0.1
3,855,670	-		GFF3813	0.86	+0.8
3,855,670	-		GFF3813	0.86	-1.5
3,855,673	+		GFF3813	0.86	-0.8
3,855,681	-		GFF3813	0.87	-0.8
3,855,681	-		GFF3813	0.87	-0.6
3,855,684	+		GFF3813	0.87	-0.7
3,855,690	+		GFF3813	0.87	+0.1
3,855,710	+		GFF3813	0.88	+0.7
3,855,714	+		GFF3813	0.88	+0.4
3,855,714	+		GFF3813	0.88	-0.3
3,855,722	-		GFF3813	0.88	-0.2
3,855,733	+		GFF3813	0.88	-0.4
3,855,733	+		GFF3813	0.88	-1.1
3,855,739	-		GFF3813	0.89	-1.3
3,855,740	-		GFF3813	0.89	-0.6
3,855,741	-		GFF3813	0.89	-0.9
3,855,741	-		GFF3813	0.89	-0.2
3,855,743	+		GFF3813	0.89	-1.6
3,855,743	+		GFF3813	0.89	-0.3
3,855,743	+		GFF3813	0.89	-1.3
3,855,743	+		GFF3813	0.89	+0.1
3,855,743	+		GFF3813	0.89	-1.1
3,855,743	+		GFF3813	0.89	+0.2
3,855,749	+		GFF3813	0.89	-0.7
3,855,751	-		GFF3813	0.89	-1.1
3,855,751	-		GFF3813	0.89	+1.8
3,855,751	-		GFF3813	0.89	-1.2
3,855,751	-		GFF3813	0.89	-1.1
3,855,751	-		GFF3813	0.89	-0.4
3,855,757	-		GFF3813	0.89	+0.8
3,855,758	-		GFF3813	0.89	-0.1
3,855,763	+		GFF3813	0.90	-0.7
3,855,768	+		GFF3813	0.90	-0.2
3,855,771	-		GFF3813	0.90	+0.1
3,855,776	-				-0.4
3,855,777	+				-0.7
3,855,795	-				-0.8
3,855,800	-				+0.7
3,855,831	-				-1.1
3,855,831	-				-0.3
3,855,863	+				-1.0
3,855,886	-				-0.2
3,855,935	+				+1.3
3,855,971	+				-0.1
3,855,971	+				-0.6
3,855,971	+				+1.6
3,855,971	+				-0.1
3,855,971	+				-0.6
3,855,971	+				+0.1
3,855,976	+				+0.2
3,855,979	-				+0.4
3,855,979	-				-0.9
3,855,979	-				-0.2
3,855,997	-				-0.7
3,856,023	-				-0.7
3,856,045	-				-1.1
3,856,068	+				-1.3
3,856,075	-				+0.9
3,856,076	+				-0.9
3,856,109	+				-0.8
3,856,117	-				-1.4
3,856,122	-				-0.7
3,856,122	-				-0.4
3,856,122	-				-0.4
3,856,127	+				-0.9
3,856,154	+				-0.7
3,856,154	+				+1.0
3,856,162	-				+0.3
3,856,172	+		GFF3814	0.12	-1.1
3,856,217	-		GFF3814	0.20	-0.7
3,856,219	+		GFF3814	0.21	-0.7
3,856,219	+		GFF3814	0.21	+1.9
3,856,219	+		GFF3814	0.21	-0.7
3,856,220	+		GFF3814	0.21	-1.2
3,856,220	+		GFF3814	0.21	-1.4
3,856,220	+		GFF3814	0.21	-1.7
3,856,227	-		GFF3814	0.22	+0.5
3,856,227	-		GFF3814	0.22	+0.0
3,856,227	-		GFF3814	0.22	-0.1
3,856,227	-		GFF3814	0.22	-1.2
3,856,227	-		GFF3814	0.22	-0.1
3,856,227	-		GFF3814	0.22	-0.2
3,856,228	-		GFF3814	0.22	-0.8
3,856,228	-		GFF3814	0.22	-0.3
3,856,237	-		GFF3814	0.24	+1.4
3,856,239	+		GFF3814	0.25	-0.2
3,856,244	+		GFF3814	0.26	-0.3
3,856,252	-		GFF3814	0.27	-0.2
3,856,354	+		GFF3814	0.47	-1.7
3,856,362	-		GFF3814	0.48	+1.4
3,856,362	-		GFF3814	0.48	-1.4
3,856,401	+		GFF3814	0.56	-1.0
3,856,408	+		GFF3814	0.57	-1.3
3,856,408	+		GFF3814	0.57	-2.6
3,856,408	+		GFF3814	0.57	-0.3
3,856,408	+		GFF3814	0.57	+1.4
3,856,409	-		GFF3814	0.58	-0.9
3,856,411	-		GFF3814	0.58	-1.1
3,856,418	+		GFF3814	0.59	+1.3
3,856,418	+		GFF3814	0.59	+0.1
3,856,418	+		GFF3814	0.59	-1.6
3,856,419	+		GFF3814	0.59	-0.7
3,856,423	+		GFF3814	0.60	-1.2
3,856,426	-		GFF3814	0.61	+0.4
3,856,426	-		GFF3814	0.61	-0.4
3,856,426	-		GFF3814	0.61	-1.1
3,856,426	-		GFF3814	0.61	+0.6
3,856,426	-		GFF3814	0.61	-0.6
3,856,426	-		GFF3814	0.61	-2.0
3,856,426	-		GFF3814	0.61	-0.6
3,856,426	-		GFF3814	0.61	+1.3
3,856,426	-		GFF3814	0.61	+0.4
3,856,426	-		GFF3814	0.61	-1.0
3,856,441	+		GFF3814	0.64	-1.7
3,856,448	+		GFF3814	0.65	-0.7
3,856,464	+		GFF3814	0.68	+0.1
3,856,464	+		GFF3814	0.68	-1.0
3,856,464	+		GFF3814	0.68	+0.8
3,856,464	+		GFF3814	0.68	-0.7
3,856,464	+		GFF3814	0.68	-0.4
3,856,472	-		GFF3814	0.70	-1.4
3,856,472	-		GFF3814	0.70	-0.1
3,856,472	-		GFF3814	0.70	-0.6
3,856,472	-		GFF3814	0.70	+0.8
3,856,472	-		GFF3814	0.70	+0.6
3,856,474	+		GFF3814	0.70	-1.3
3,856,474	+		GFF3814	0.70	-0.4
3,856,474	+		GFF3814	0.70	-1.4
3,856,474	+		GFF3814	0.70	+1.0
3,856,474	+		GFF3814	0.70	-2.4
3,856,474	+		GFF3814	0.70	-0.8
3,856,474	+		GFF3814	0.70	-0.4
3,856,474	+		GFF3814	0.70	-0.6
3,856,474	+		GFF3814	0.70	-1.1
3,856,482	-		GFF3814	0.72	-1.1
3,856,482	-		GFF3814	0.72	-0.7
3,856,482	-		GFF3814	0.72	-0.8
3,856,482	-		GFF3814	0.72	-0.3
3,856,482	-		GFF3814	0.72	+1.4
3,856,482	-		GFF3814	0.72	-0.4
3,856,498	+		GFF3814	0.75	+0.4
3,856,554	+		GFF3814	0.86	+0.1
3,856,554	+		GFF3814	0.86	+1.7
3,856,554	+		GFF3814	0.86	-0.1
3,856,569	+		GFF3814	0.89	-1.1
3,856,573	-		GFF3814	0.89	-1.6
3,856,573	-		GFF3814	0.89	-1.0
3,856,578	+				+0.3
3,856,586	-				-0.2
3,856,612	+				-0.2
3,856,612	+				+0.1
3,856,620	-				-0.2
3,856,642	+				-0.1
3,856,642	+				-1.1
3,856,642	+				+0.4
3,856,642	+				-2.0
3,856,642	+				-1.6
3,856,650	-				-0.0
3,856,650	-				-1.1
3,856,660	+				-1.7
3,856,660	+				-0.7
3,856,661	+				-1.3
3,856,668	+				-0.4
3,856,668	-				-0.3
3,856,668	-				+0.8
3,856,685	+				-0.7
3,856,689	-				+0.6
3,856,690	+				-0.7
3,856,690	+				-1.7
3,856,698	-				-1.3
3,856,700	+				-1.0
3,856,700	+				-0.8
3,856,700	+				-1.1
3,856,700	+				-1.7
3,856,700	+				-0.4
3,856,700	+				-0.3
3,856,700	+				-1.6
3,856,700	+				-0.7
3,856,700	+				-0.3
3,856,700	+				+0.7
3,856,700	+				-1.0
3,856,700	+				-1.2
3,856,700	+				-0.6
3,856,708	-				-1.6
3,856,708	-				-0.2
3,856,708	-				-1.4
3,856,708	-				+0.6
3,856,708	-				-1.4
3,856,708	-				-0.4
3,856,708	-				-0.6
3,856,708	-				-1.4
3,856,708	-				-0.7
3,856,708	-				+0.4
3,856,708	-				+0.0
3,856,708	-				-0.1
3,856,708	-				-0.7
3,856,708	-				-0.7
3,856,708	-				-0.3
3,856,708	-				-0.1
3,856,710	-				+0.7
3,856,715	-				-0.5
3,856,732	-				-1.0
3,856,760	+		GFF3815	0.10	-1.1
3,856,772	+		GFF3815	0.11	+0.2
3,856,780	-		GFF3815	0.12	-1.7
3,856,790	+		GFF3815	0.13	+0.6
3,856,790	+		GFF3815	0.13	+2.1
3,856,790	+		GFF3815	0.13	-1.7
3,856,790	+		GFF3815	0.13	-0.1
3,856,795	+		GFF3815	0.13	-1.4
3,856,795	+		GFF3815	0.13	+0.2
3,856,795	+		GFF3815	0.13	-0.7
3,856,795	+		GFF3815	0.13	-0.2
3,856,795	+		GFF3815	0.13	+0.7
3,856,795	+		GFF3815	0.13	-0.3
3,856,798	-		GFF3815	0.13	+1.2
3,856,798	-		GFF3815	0.13	+1.5
3,856,798	-		GFF3815	0.13	+1.8
3,856,798	-		GFF3815	0.13	-1.1
3,856,798	-		GFF3815	0.13	+0.3
3,856,798	-		GFF3815	0.13	-2.6
3,856,803	-		GFF3815	0.14	+0.1
3,856,803	-		GFF3815	0.14	+0.6
3,856,803	-		GFF3815	0.14	-0.4
3,856,803	-		GFF3815	0.14	-0.4
3,856,810	+		GFF3815	0.14	+0.8
3,856,810	+		GFF3815	0.14	+0.2
3,856,810	+		GFF3815	0.14	+0.3
3,856,818	-		GFF3815	0.15	+0.0
3,856,818	-		GFF3815	0.15	+0.7
3,856,829	+		GFF3815	0.16	-0.1
3,856,837	-		GFF3815	0.16	-1.2
3,856,859	-		GFF3815	0.18	+0.3
3,856,861	+		GFF3815	0.18	-0.7
3,856,863	+		GFF3815	0.18	-0.2
3,856,871	+		GFF3815	0.19	-0.1
3,856,871	+		GFF3815	0.19	-0.7
3,856,871	+		GFF3815	0.19	-1.8
3,856,871	+		GFF3815	0.19	+0.3
3,856,871	+		GFF3815	0.19	+0.5
3,856,879	-		GFF3815	0.20	-1.0
3,856,879	-		GFF3815	0.20	-1.6
3,856,879	-		GFF3815	0.20	-0.7
3,856,879	-		GFF3815	0.20	+0.7
3,856,879	-		GFF3815	0.20	-1.7
3,856,879	-		GFF3815	0.20	+0.2
3,856,879	-		GFF3815	0.20	+0.7
3,856,879	-		GFF3815	0.20	+0.8
3,856,879	-		GFF3815	0.20	-2.0
3,856,912	+		GFF3815	0.22	-0.1
3,856,920	-		GFF3815	0.23	-0.1
3,856,920	-		GFF3815	0.23	+0.8
3,856,938	+		GFF3815	0.24	-0.4
3,856,939	+		GFF3815	0.24	-1.1
3,856,939	+		GFF3815	0.24	-0.6
3,856,939	+		GFF3815	0.24	-0.8
3,856,939	+		GFF3815	0.24	+0.2
3,856,939	+		GFF3815	0.24	-1.8
3,856,947	-		GFF3815	0.25	+0.6
3,856,947	-		GFF3815	0.25	-1.4
3,856,947	-		GFF3815	0.25	+0.2
3,856,947	-		GFF3815	0.25	+0.9
3,856,969	-		GFF3815	0.27	-1.3
3,856,970	-		GFF3815	0.27	-2.4
3,856,980	+		GFF3815	0.28	+1.0
3,856,984	+		GFF3815	0.28	+0.9
3,856,985	+		GFF3815	0.28	-0.8
3,856,985	+		GFF3815	0.28	-0.7
3,856,989	+		GFF3815	0.28	+0.6
3,856,989	+		GFF3815	0.28	+0.8
3,856,993	-		GFF3815	0.29	+0.6
3,856,997	-		GFF3815	0.29	-0.2
3,856,997	-		GFF3815	0.29	-0.4
3,857,022	+		GFF3815	0.31	-1.6
3,857,022	+		GFF3815	0.31	-0.3
3,857,029	+		GFF3815	0.31	+0.1
3,857,034	+		GFF3815	0.32	+0.5
3,857,098	+		GFF3815	0.37	-2.3
3,857,098	+		GFF3815	0.37	-1.3
3,857,098	+		GFF3815	0.37	-0.7
3,857,098	+		GFF3815	0.37	-0.2
3,857,098	+		GFF3815	0.37	+0.0
3,857,098	+		GFF3815	0.37	-0.2
3,857,098	+		GFF3815	0.37	-1.6
3,857,098	+		GFF3815	0.37	-0.8
3,857,103	-		GFF3815	0.37	-1.4
3,857,105	-		GFF3815	0.37	-1.1
3,857,106	-		GFF3815	0.38	+0.2
3,857,106	-		GFF3815	0.38	-1.2
3,857,106	-		GFF3815	0.38	-0.7
3,857,106	-		GFF3815	0.38	-1.8
3,857,106	-		GFF3815	0.38	+0.3
3,857,106	-		GFF3815	0.38	+0.8
3,857,106	-		GFF3815	0.38	+0.4
3,857,108	+		GFF3815	0.38	-0.7
3,857,108	+		GFF3815	0.38	-2.2
3,857,108	+		GFF3815	0.38	-0.8
3,857,111	-		GFF3815	0.38	-1.7
3,857,116	-		GFF3815	0.38	+0.2
3,857,116	-		GFF3815	0.38	+0.3
3,857,116	-		GFF3815	0.38	-2.6
3,857,149	+		GFF3815	0.41	-1.0
3,857,154	+		GFF3815	0.41	+0.0
3,857,154	+		GFF3815	0.41	-0.7
3,857,162	-		GFF3815	0.42	+1.3
3,857,181	+		GFF3815	0.43	-0.1
3,857,183	+		GFF3815	0.44	+1.3
3,857,188	+		GFF3815	0.44	-1.5
3,857,188	+		GFF3815	0.44	+0.3
3,857,188	+		GFF3815	0.44	-1.4
3,857,188	+		GFF3815	0.44	+0.3
3,857,188	+		GFF3815	0.44	-0.4
3,857,188	+		GFF3815	0.44	+0.3
3,857,191	-		GFF3815	0.44	-1.0
3,857,196	-		GFF3815	0.45	-2.0
3,857,196	-		GFF3815	0.45	-1.3
3,857,196	-		GFF3815	0.45	+2.6
3,857,211	-		GFF3815	0.46	+0.1
3,857,222	+		GFF3815	0.47	+0.1
3,857,240	-		GFF3815	0.48	-1.0
3,857,265	-		GFF3815	0.50	+0.2
3,857,267	+		GFF3815	0.50	+0.1
3,857,268	-		GFF3815	0.50	+0.6
3,857,279	+		GFF3815	0.51	+0.7
3,857,279	+		GFF3815	0.51	+1.7
3,857,291	+		GFF3815	0.52	-1.2
3,857,300	+		GFF3815	0.53	+0.0
3,857,300	+		GFF3815	0.53	-0.6
3,857,300	+		GFF3815	0.53	+1.1
3,857,300	-		GFF3815	0.53	-0.4
3,857,305	+		GFF3815	0.53	-0.1
3,857,305	+		GFF3815	0.53	+1.0
3,857,308	-		GFF3815	0.53	-1.7
3,857,326	+		GFF3815	0.55	+0.6
3,857,326	+		GFF3815	0.55	+0.4
3,857,355	+		GFF3815	0.57	+0.6
3,857,368	-		GFF3815	0.58	-0.2
3,857,373	-		GFF3815	0.58	+0.8
3,857,379	+		GFF3815	0.59	-1.6
3,857,379	+		GFF3815	0.59	+1.7
3,857,428	-		GFF3815	0.63	-1.3
3,857,430	-		GFF3815	0.63	-1.2
3,857,497	+		GFF3815	0.68	+1.0
3,857,502	+		GFF3815	0.69	-0.3
3,857,507	+		GFF3815	0.69	-0.4
3,857,507	+		GFF3815	0.69	-0.8
3,857,507	+		GFF3815	0.69	+0.1
3,857,507	+		GFF3815	0.69	+0.7
3,857,507	+		GFF3815	0.69	-0.1
3,857,507	+		GFF3815	0.69	-1.6
3,857,507	+		GFF3815	0.69	+0.7
3,857,507	+		GFF3815	0.69	-0.8
3,857,507	+		GFF3815	0.69	-1.9
3,857,507	+		GFF3815	0.69	-0.8
3,857,507	+		GFF3815	0.69	+0.9
3,857,507	+		GFF3815	0.69	-0.2
3,857,507	+		GFF3815	0.69	-2.2
3,857,507	+		GFF3815	0.69	+0.8
3,857,507	+		GFF3815	0.69	-0.2
3,857,507	+		GFF3815	0.69	+0.6
3,857,507	+		GFF3815	0.69	-1.7
3,857,507	+		GFF3815	0.69	-0.9
3,857,507	+		GFF3815	0.69	-1.8
3,857,509	+		GFF3815	0.69	-2.0
3,857,514	+		GFF3815	0.70	+0.7
3,857,515	-		GFF3815	0.70	-1.1
3,857,515	-		GFF3815	0.70	+1.8
3,857,515	-		GFF3815	0.70	-0.4
3,857,515	-		GFF3815	0.70	-0.3
3,857,515	-		GFF3815	0.70	-0.4
3,857,515	-		GFF3815	0.70	+0.0
3,857,515	-		GFF3815	0.70	-0.3
3,857,515	-		GFF3815	0.70	+0.3
3,857,515	-		GFF3815	0.70	-1.1
3,857,515	-		GFF3815	0.70	-1.1
3,857,515	-		GFF3815	0.70	-1.3
3,857,515	-		GFF3815	0.70	-0.2
3,857,519	+		GFF3815	0.70	+0.3
3,857,536	+		GFF3815	0.71	+0.0
3,857,574	+		GFF3815	0.74	-1.1
3,857,579	+		GFF3815	0.75	-0.3
3,857,594	+		GFF3815	0.76	+0.8
3,857,599	+		GFF3815	0.76	+0.1
3,857,607	-		GFF3815	0.77	+0.7