Strain Fitness in Sphingobium sp. HT1-2 around GFF3787

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,827,627	-		GFF3785	0.55	-0.7
3,827,636	+		GFF3785	0.56	-0.0
3,827,637	-		GFF3785	0.56	+0.2
3,827,649	+		GFF3785	0.57	-2.3
3,827,649	+		GFF3785	0.57	-0.8
3,827,649	+		GFF3785	0.57	-1.2
3,827,649	+		GFF3785	0.57	-0.2
3,827,651	-		GFF3785	0.57	-0.4
3,827,651	-		GFF3785	0.57	-0.9
3,827,651	-		GFF3785	0.57	+1.2
3,827,680	+		GFF3785	0.61	-2.0
3,827,688	-		GFF3785	0.61	-1.5
3,827,699	+		GFF3785	0.63	+0.9
3,827,699	+		GFF3785	0.63	+0.7
3,827,712	+		GFF3785	0.64	+0.7
3,827,714	+		GFF3785	0.64	-0.8
3,827,718	-		GFF3785	0.65	-0.7
3,827,729	+		GFF3785	0.66	+0.8
3,827,739	+		GFF3785	0.67	+0.3
3,827,739	+		GFF3785	0.67	+0.3
3,827,747	-		GFF3785	0.68	+0.7
3,827,749	-		GFF3785	0.68	-0.6
3,827,776	+		GFF3785	0.71	-0.8
3,827,782	+		GFF3785	0.72	-1.1
3,827,798	+		GFF3785	0.73	-1.6
3,827,798	+		GFF3785	0.73	+0.7
3,827,798	+		GFF3785	0.73	-1.8
3,827,798	+		GFF3785	0.73	+0.3
3,827,806	-		GFF3785	0.74	+0.7
3,827,806	-		GFF3785	0.74	-1.2
3,827,815	+		GFF3785	0.75	-0.2
3,827,828	+		GFF3785	0.76	+0.7
3,827,836	+		GFF3785	0.77	+0.8
3,827,840	+		GFF3785	0.78	-0.3
3,827,843	-		GFF3785	0.78	-0.4
3,827,843	-		GFF3785	0.78	-1.4
3,827,844	-		GFF3785	0.78	-1.6
3,827,853	+		GFF3785	0.79	-0.7
3,827,861	-		GFF3785	0.80	-1.1
3,827,873	+		GFF3785	0.81	-0.8
3,827,882	+		GFF3785	0.82	+0.8
3,827,916	+		GFF3785	0.86	-0.7
3,827,916	+		GFF3785	0.86	-1.1
3,827,918	-		GFF3785	0.86	+1.0
3,827,928	+		GFF3785	0.87	+0.2
3,827,928	+		GFF3785	0.87	-0.2
3,827,928	+		GFF3785	0.87	+1.3
3,827,936	-		GFF3785	0.88	-0.9
3,827,936	-		GFF3785	0.88	-1.4
3,827,936	-		GFF3785	0.88	-0.7
3,827,940	-		GFF3785	0.88	-0.2
3,827,959	-				+0.5
3,827,985	+				-0.7
3,827,985	+				-1.5
3,827,986	-				-1.2
3,827,994	+				+0.1
3,827,996	-				-1.1
3,828,002	-				-0.3
3,828,002	-				-0.1
3,828,023	+				-2.6
3,828,023	+				-1.0
3,828,045	-				-1.1
3,828,046	+				+0.2
3,828,046	+				-0.2
3,828,049	-				-1.6
3,828,054	-				+0.8
3,828,054	-				-1.3
3,828,054	-				-0.7
3,828,063	+				+0.4
3,828,070	-				+0.7
3,828,088	-				+0.2
3,828,104	+				-1.6
3,828,111	+				+0.8
3,828,120	+				-0.6
3,828,194	+				-1.3
3,828,194	+				-0.7
3,828,194	+				-0.3
3,828,194	+				+1.2
3,828,201	+				-0.9
3,828,202	-				-1.7
3,828,202	-				+0.4
3,828,202	-				-1.0
3,828,286	-		GFF3786	0.11	-0.3
3,828,306	+		GFF3786	0.18	-0.7
3,828,314	-		GFF3786	0.21	-1.2
3,828,321	-		GFF3786	0.24	-1.8
3,828,329	+		GFF3786	0.26	+0.3
3,828,342	-		GFF3786	0.31	+0.3
3,828,345	+		GFF3786	0.32	-0.2
3,828,346	+		GFF3786	0.32	-0.4
3,828,350	+		GFF3786	0.34	-0.1
3,828,353	-		GFF3786	0.35	+0.0
3,828,356	+		GFF3786	0.36	-0.9
3,828,398	+		GFF3786	0.50	+0.7
3,828,437	+		GFF3786	0.64	-0.0
3,828,445	-		GFF3786	0.67	-0.7
3,828,445	-		GFF3786	0.67	-0.5
3,828,526	-				-1.1
3,828,526	-				-0.7
3,828,529	+				-1.3
3,828,529	+				+0.9
3,828,529	+				+0.2
3,828,529	+				-1.3
3,828,529	+				+1.8
3,828,537	-				-0.5
3,828,537	-				-1.8
3,828,537	-				-1.6
3,828,550	-				+0.1
3,828,555	-				-2.2
3,828,555	-				+1.6
3,828,555	-				-0.7
3,828,585	+				-2.1
3,828,593	+				-0.9
3,828,593	+				+1.1
3,828,593	+				+0.3
3,828,593	+				+0.3
3,828,593	+				-2.3
3,828,593	+				-1.1
3,828,593	+				-0.1
3,828,601	-				-0.6
3,828,601	-				-1.8
3,828,601	-				+0.7
3,828,601	-				-0.1
3,828,601	-				+1.1
3,828,603	+				-0.7
3,828,603	+				-1.5
3,828,603	+				-0.2
3,828,603	+				+0.1
3,828,611	-				-1.9
3,828,627	+				+1.9
3,828,627	+				+1.0
3,828,635	-				-0.7
3,828,645	-				-2.2
3,828,651	-				-1.1
3,828,669	+		GFF3787	0.10	-0.8
3,828,683	+		GFF3787	0.13	-0.5
3,828,693	-		GFF3787	0.16	+0.0
3,828,705	-		GFF3787	0.18	-2.3
3,828,738	-		GFF3787	0.26	-0.7
3,828,742	+		GFF3787	0.27	-0.5
3,828,748	-		GFF3787	0.28	+0.5
3,828,750	-		GFF3787	0.29	-0.1
3,828,764	+		GFF3787	0.32	-0.1
3,828,764	+		GFF3787	0.32	-0.7
3,828,785	-		GFF3787	0.37	-0.2
3,828,864	+		GFF3787	0.55	-0.6
3,828,866	-		GFF3787	0.55	+0.7
3,828,871	-		GFF3787	0.56	+1.3
3,828,872	-		GFF3787	0.56	-0.9
3,828,885	+		GFF3787	0.59	-2.6
3,828,885	+		GFF3787	0.59	-1.1
3,828,888	-		GFF3787	0.60	+1.1
3,828,893	-		GFF3787	0.61	+0.0
3,828,893	-		GFF3787	0.61	-1.3
3,828,893	-		GFF3787	0.61	+0.4
3,828,893	-		GFF3787	0.61	+1.3
3,828,893	-		GFF3787	0.61	+0.1
3,828,894	-		GFF3787	0.61	-1.8
3,828,910	+		GFF3787	0.65	-1.7
3,828,910	+		GFF3787	0.65	+0.1
3,828,918	-		GFF3787	0.67	-0.4
3,828,922	+		GFF3787	0.68	-1.0
3,828,923	-		GFF3787	0.68	-0.7
3,828,964	-		GFF3787	0.77	-0.2
3,828,964	-		GFF3787	0.77	-0.1
3,828,974	-		GFF3787	0.80	+0.2
3,828,995	-		GFF3787	0.84	+0.3
3,829,017	-		GFF3787	0.89	-0.9
3,829,019	-				+0.0
3,829,028	+				-2.1
3,829,028	+				-0.4
3,829,028	+				-2.4
3,829,028	+				-0.6
3,829,028	+				+1.5
3,829,036	-				-0.7
3,829,036	-				-2.2
3,829,036	-				-1.0
3,829,038	+				-0.4
3,829,038	+				-0.5
3,829,038	+				+0.2
3,829,038	-				+1.3
3,829,046	-				-0.7
3,829,079	+				-0.7
3,829,079	+				-0.3
3,829,088	-				-1.7
3,829,091	+				-1.7
3,829,094	-				-1.7
3,829,096	+				-1.3
3,829,098	+				-1.6
3,829,099	-				-1.9
3,829,099	-				-0.1
3,829,099	-				+1.1
3,829,111	-				-1.8
3,829,138	-				-1.7
3,829,176	+				-0.3
3,829,184	-				-1.3
3,829,208	+		GFF3788	0.10	-0.3
3,829,208	+		GFF3788	0.10	+1.7
3,829,211	-		GFF3788	0.10	+0.6
3,829,226	+		GFF3788	0.11	+1.0
3,829,231	+		GFF3788	0.12	-0.6
3,829,231	+		GFF3788	0.12	-0.7
3,829,231	+		GFF3788	0.12	-0.3
3,829,231	+		GFF3788	0.12	-0.2
3,829,231	+		GFF3788	0.12	-1.8
3,829,231	+		GFF3788	0.12	+0.6
3,829,231	+		GFF3788	0.12	-0.2
3,829,234	-		GFF3788	0.12	-0.3
3,829,236	+		GFF3788	0.12	-0.6
3,829,238	+		GFF3788	0.12	+1.4
3,829,239	-		GFF3788	0.12	-0.8
3,829,239	-		GFF3788	0.12	-0.2
3,829,239	-		GFF3788	0.12	-0.6
3,829,239	-		GFF3788	0.12	-0.2
3,829,241	+		GFF3788	0.13	-0.6
3,829,243	+		GFF3788	0.13	+0.5
3,829,244	-		GFF3788	0.13	-0.9
3,829,248	+		GFF3788	0.13	-2.0
3,829,256	-		GFF3788	0.14	-1.7
3,829,276	+		GFF3788	0.15	-0.6
3,829,277	+		GFF3788	0.15	+0.1
3,829,277	-		GFF3788	0.15	+0.7
3,829,284	+		GFF3788	0.16	-0.2
3,829,284	+		GFF3788	0.16	+0.2
3,829,284	-		GFF3788	0.16	-1.1
3,829,285	-		GFF3788	0.16	+0.0
3,829,285	-		GFF3788	0.16	-0.8
3,829,292	-		GFF3788	0.17	+0.9
3,829,329	+		GFF3788	0.20	-1.7
3,829,329	+		GFF3788	0.20	+0.0
3,829,330	-		GFF3788	0.20	-0.6
3,829,334	+		GFF3788	0.20	+0.8
3,829,334	+		GFF3788	0.20	-1.9
3,829,352	+		GFF3788	0.21	+0.7
3,829,352	+		GFF3788	0.21	-2.0
3,829,357	-		GFF3788	0.22	+0.3
3,829,360	-		GFF3788	0.22	-1.6
3,829,364	+		GFF3788	0.22	-0.4
3,829,405	+		GFF3788	0.26	+1.3
3,829,405	+		GFF3788	0.26	-1.0
3,829,405	+		GFF3788	0.26	-0.1
3,829,413	-		GFF3788	0.26	-0.5
3,829,413	-		GFF3788	0.26	-0.9
3,829,427	-		GFF3788	0.27	+0.1
3,829,465	+		GFF3788	0.30	-1.0
3,829,493	+		GFF3788	0.33	+2.4
3,829,499	+		GFF3788	0.33	-2.1
3,829,499	+		GFF3788	0.33	+0.7
3,829,499	+		GFF3788	0.33	-0.2
3,829,500	+		GFF3788	0.33	-1.2
3,829,506	+		GFF3788	0.34	-0.3
3,829,506	+		GFF3788	0.34	+0.3
3,829,507	-		GFF3788	0.34	+0.8
3,829,508	-		GFF3788	0.34	+0.2
3,829,516	+		GFF3788	0.34	-1.2
3,829,516	+		GFF3788	0.34	-1.3
3,829,524	-		GFF3788	0.35	-0.3
3,829,543	+		GFF3788	0.37	+1.4
3,829,549	+		GFF3788	0.37	-0.4
3,829,567	-		GFF3788	0.38	-0.7
3,829,583	+		GFF3788	0.40	-1.7
3,829,585	+		GFF3788	0.40	-2.0
3,829,591	-		GFF3788	0.40	+0.6
3,829,591	-		GFF3788	0.40	-0.4
3,829,595	+		GFF3788	0.41	-0.8
3,829,618	+		GFF3788	0.43	-0.7
3,829,626	-		GFF3788	0.43	+0.0
3,829,644	-		GFF3788	0.45	-1.4
3,829,676	+		GFF3788	0.47	-0.8
3,829,676	+		GFF3788	0.47	-0.4
3,829,682	-		GFF3788	0.48	-0.4
3,829,684	-		GFF3788	0.48	-1.3
3,829,688	+		GFF3788	0.48	+0.0
3,829,688	+		GFF3788	0.48	-0.4
3,829,706	+		GFF3788	0.50	-0.6
3,829,717	+		GFF3788	0.50	-0.4
3,829,722	+		GFF3788	0.51	-0.7
3,829,722	+		GFF3788	0.51	-0.5
3,829,722	+		GFF3788	0.51	-0.7
3,829,722	+		GFF3788	0.51	-1.0
3,829,722	+		GFF3788	0.51	-0.3
3,829,722	+		GFF3788	0.51	-1.1
3,829,722	+		GFF3788	0.51	+0.4
3,829,722	+		GFF3788	0.51	-0.3
3,829,722	+		GFF3788	0.51	-1.9
3,829,722	+		GFF3788	0.51	+0.3
3,829,722	+		GFF3788	0.51	+0.4
3,829,722	+		GFF3788	0.51	-0.2
3,829,722	+		GFF3788	0.51	-0.6
3,829,722	+		GFF3788	0.51	+0.1
3,829,722	+		GFF3788	0.51	-0.9
3,829,722	+		GFF3788	0.51	-0.1
3,829,722	+		GFF3788	0.51	-1.3
3,829,722	+		GFF3788	0.51	-1.0
3,829,722	+		GFF3788	0.51	-2.3
3,829,722	+		GFF3788	0.51	-0.4
3,829,722	+		GFF3788	0.51	+0.6
3,829,722	+		GFF3788	0.51	+0.1
3,829,722	+		GFF3788	0.51	-0.3
3,829,726	+		GFF3788	0.51	+0.7
3,829,730	-		GFF3788	0.51	+0.2
3,829,730	-		GFF3788	0.51	-0.4
3,829,730	-		GFF3788	0.51	-2.0
3,829,730	-		GFF3788	0.51	-0.7
3,829,730	-		GFF3788	0.51	+0.4
3,829,730	-		GFF3788	0.51	-1.3
3,829,730	-		GFF3788	0.51	-0.2
3,829,730	-		GFF3788	0.51	-0.3
3,829,730	-		GFF3788	0.51	-1.4
3,829,730	-		GFF3788	0.51	-0.3
3,829,730	-		GFF3788	0.51	-1.8
3,829,737	+		GFF3788	0.52	-0.8
3,829,743	-		GFF3788	0.52	-1.6
3,829,764	+		GFF3788	0.54	+0.0
3,829,765	+		GFF3788	0.54	-0.4
3,829,771	+		GFF3788	0.55	-0.1
3,829,773	-		GFF3788	0.55	-0.5
3,829,773	-		GFF3788	0.55	+0.6
3,829,809	+		GFF3788	0.58	+1.1
3,829,814	+		GFF3788	0.58	-2.5
3,829,814	+		GFF3788	0.58	+0.4
3,829,817	-		GFF3788	0.58	+0.1
3,829,818	+		GFF3788	0.58	+1.1
3,829,819	+		GFF3788	0.58	-1.8
3,829,819	+		GFF3788	0.58	-0.6
3,829,822	-		GFF3788	0.59	-0.3
3,829,825	+		GFF3788	0.59	-1.4
3,829,827	-		GFF3788	0.59	+1.8
3,829,827	-		GFF3788	0.59	+0.2
3,829,827	-		GFF3788	0.59	-1.4
3,829,831	-		GFF3788	0.59	+0.9
3,829,844	+		GFF3788	0.60	+0.0
3,829,852	-		GFF3788	0.61	-0.1
3,829,852	-		GFF3788	0.61	-0.3
3,829,877	+		GFF3788	0.63	-0.3
3,829,889	+		GFF3788	0.64	+1.9
3,829,906	+		GFF3788	0.65	-2.1
3,829,906	+		GFF3788	0.65	-0.0
3,829,914	-		GFF3788	0.66	-0.6
3,829,914	-		GFF3788	0.66	-1.2
3,829,936	-		GFF3788	0.68	+1.4
3,829,983	+		GFF3788	0.72	-0.7
3,829,997	+		GFF3788	0.73	-0.7
3,829,997	+		GFF3788	0.73	-1.7
3,829,997	+		GFF3788	0.73	-1.1
3,829,997	+		GFF3788	0.73	-0.3
3,829,997	+		GFF3788	0.73	+0.5
3,830,005	-		GFF3788	0.73	-0.4
3,830,022	+		GFF3788	0.75	+0.8
3,830,027	+		GFF3788	0.75	+0.2
3,830,027	+		GFF3788	0.75	-0.1
3,830,029	+		GFF3788	0.75	-1.3
3,830,029	+		GFF3788	0.75	-1.7
3,830,030	-		GFF3788	0.75	-1.0
3,830,030	-		GFF3788	0.75	-0.5
3,830,030	-		GFF3788	0.75	-0.7
3,830,030	-		GFF3788	0.75	-0.8
3,830,030	-		GFF3788	0.75	-1.7
3,830,045	-		GFF3788	0.76	+0.0
3,830,053	+		GFF3788	0.77	-0.4
3,830,058	+		GFF3788	0.77	-1.6
3,830,058	+		GFF3788	0.77	+1.6
3,830,058	+		GFF3788	0.77	+0.2
3,830,058	+		GFF3788	0.77	+0.7
3,830,061	-		GFF3788	0.78	-0.1