Strain Fitness in Sphingobium sp. HT1-2 around GFF3783

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,824,054	-				-2.0
3,824,056	-				-1.2
3,824,059	+				-0.9
3,824,059	-				+0.3
3,824,067	-				+0.0
3,824,067	-				+0.6
3,824,075	+				-0.6
3,824,083	-				+0.3
3,824,101	-				-1.4
3,824,101	-				-1.6
3,824,101	-				+0.3
3,824,121	+				-1.0
3,824,121	+				-1.1
3,824,121	+				-0.1
3,824,121	+				+0.6
3,824,124	-				-2.5
3,824,124	-				-0.9
3,824,129	-				+0.6
3,824,129	-				-0.6
3,824,129	-				-1.4
3,824,129	-				-0.3
3,824,129	-				-0.2
3,824,134	+				-0.3
3,824,153	+				+0.6
3,824,192	+		GFF3782	0.12	-1.1
3,824,192	+		GFF3782	0.12	-0.4
3,824,198	+		GFF3782	0.13	-0.3
3,824,206	+		GFF3782	0.14	-0.4
3,824,206	-		GFF3782	0.14	+1.4
3,824,206	-		GFF3782	0.14	-1.1
3,824,206	-		GFF3782	0.14	-1.1
3,824,206	-		GFF3782	0.14	-2.1
3,824,219	+		GFF3782	0.15	-2.8
3,824,219	+		GFF3782	0.15	-0.3
3,824,219	+		GFF3782	0.15	+0.5
3,824,230	+		GFF3782	0.17	+0.7
3,824,238	-		GFF3782	0.18	-1.4
3,824,245	-		GFF3782	0.19	-0.9
3,824,286	+		GFF3782	0.23	-0.2
3,824,286	+		GFF3782	0.23	-0.3
3,824,319	-		GFF3782	0.27	+0.1
3,824,324	+		GFF3782	0.28	-0.1
3,824,325	-		GFF3782	0.28	+0.3
3,824,341	+		GFF3782	0.30	-0.6
3,824,350	+		GFF3782	0.31	-0.6
3,824,360	+		GFF3782	0.32	-0.3
3,824,376	-		GFF3782	0.34	+0.0
3,824,413	+		GFF3782	0.38	+0.0
3,824,431	+		GFF3782	0.41	-1.4
3,824,448	+		GFF3782	0.43	+0.3
3,824,460	+		GFF3782	0.44	-0.1
3,824,475	-		GFF3782	0.46	+1.3
3,824,476	-		GFF3782	0.46	-1.0
3,824,476	-		GFF3782	0.46	-0.8
3,824,483	-		GFF3782	0.47	-1.7
3,824,484	-		GFF3782	0.47	+0.3
3,824,492	+		GFF3782	0.48	+0.7
3,824,513	-		GFF3782	0.50	-0.8
3,824,567	-		GFF3782	0.57	-0.1
3,824,613	+		GFF3782	0.62	+0.1
3,824,621	-		GFF3782	0.63	-1.1
3,824,621	-		GFF3782	0.63	+0.1
3,824,621	-		GFF3782	0.63	+0.0
3,824,622	+		GFF3782	0.63	-0.7
3,824,631	-		GFF3782	0.64	-1.7
3,824,640	+		GFF3782	0.65	-0.7
3,824,648	-		GFF3782	0.66	-1.4
3,824,648	-		GFF3782	0.66	-0.3
3,824,655	+		GFF3782	0.67	-0.2
3,824,663	+		GFF3782	0.68	-0.0
3,824,663	+		GFF3782	0.68	-1.6
3,824,663	+		GFF3782	0.68	-1.6
3,824,663	+		GFF3782	0.68	+0.4
3,824,663	+		GFF3782	0.68	+0.0
3,824,671	-		GFF3782	0.69	-1.4
3,824,671	-		GFF3782	0.69	+1.3
3,824,671	-		GFF3782	0.69	+0.3
3,824,673	+		GFF3782	0.69	-0.6
3,824,673	+		GFF3782	0.69	-0.7
3,824,681	-		GFF3782	0.70	-0.3
3,824,688	+		GFF3782	0.71	-1.6
3,824,688	-		GFF3782	0.71	-0.7
3,824,697	+		GFF3782	0.72	-0.0
3,824,697	+		GFF3782	0.72	-0.1
3,824,697	+		GFF3782	0.72	-1.1
3,824,697	+		GFF3782	0.72	-2.0
3,824,700	-		GFF3782	0.72	-0.5
3,824,702	+		GFF3782	0.73	-1.4
3,824,702	+		GFF3782	0.73	-0.7
3,824,705	-		GFF3782	0.73	-0.4
3,824,705	-		GFF3782	0.73	+0.4
3,824,705	-		GFF3782	0.73	-0.7
3,824,705	-		GFF3782	0.73	+0.7
3,824,721	+		GFF3782	0.75	-1.0
3,824,745	-		GFF3782	0.78	-0.9
3,824,751	+		GFF3782	0.79	+0.6
3,824,751	+		GFF3782	0.79	-1.7
3,824,751	+		GFF3782	0.79	-0.4
3,824,759	-		GFF3782	0.79	+0.4
3,824,759	-		GFF3782	0.79	-1.0
3,824,759	-		GFF3782	0.79	-0.9
3,824,759	-		GFF3782	0.79	+0.1
3,824,759	-		GFF3782	0.79	+0.8
3,824,759	-		GFF3782	0.79	-0.6
3,824,759	-		GFF3782	0.79	+0.0
3,824,765	+		GFF3782	0.80	-1.7
3,824,770	+		GFF3782	0.81	-0.2
3,824,770	+		GFF3782	0.81	-0.4
3,824,770	+		GFF3782	0.81	-1.1
3,824,770	+		GFF3782	0.81	-0.2
3,824,770	+		GFF3782	0.81	+0.6
3,824,770	+		GFF3782	0.81	+0.7
3,824,778	-		GFF3782	0.82	+1.0
3,824,778	-		GFF3782	0.82	-0.1
3,824,778	-		GFF3782	0.82	-0.9
3,824,785	+		GFF3782	0.83	-1.0
3,824,785	+		GFF3782	0.83	-2.2
3,824,788	-		GFF3782	0.83	-0.6
3,824,793	-		GFF3782	0.84	-1.3
3,824,802	+		GFF3782	0.85	-1.1
3,824,829	-		GFF3782	0.88	+0.4
3,824,869	-				-0.6
3,824,874	-				-0.3
3,824,892	+				-0.8
3,824,895	-				-0.6
3,824,899	-				-1.9
3,824,905	-				-0.3
3,824,924	-				-0.6
3,824,949	+				+0.6
3,824,967	-				-0.9
3,825,000	-				-0.6
3,825,006	+				-0.3
3,825,006	+				+0.2
3,825,008	+				-0.9
3,825,011	-				-0.2
3,825,016	-				-0.3
3,825,016	-				-0.2
3,825,100	+				-1.9
3,825,108	+				-0.8
3,825,111	-				+0.3
3,825,111	-				-0.9
3,825,111	-				-0.3
3,825,113	+				-0.7
3,825,132	+				-0.8
3,825,145	-				-1.1
3,825,171	-				-0.7
3,825,171	-				-0.2
3,825,190	-				-1.0
3,825,191	+				-0.7
3,825,232	+		GFF3783	0.11	-0.3
3,825,240	-		GFF3783	0.12	-1.1
3,825,250	+		GFF3783	0.12	-1.0
3,825,250	+		GFF3783	0.12	+0.3
3,825,253	-		GFF3783	0.13	+2.8
3,825,273	-		GFF3783	0.14	-0.6
3,825,275	+		GFF3783	0.14	-1.5
3,825,282	+		GFF3783	0.14	-0.6
3,825,283	-		GFF3783	0.15	-0.9
3,825,306	-		GFF3783	0.16	-0.7
3,825,343	+		GFF3783	0.18	-0.2
3,825,351	-		GFF3783	0.19	-0.7
3,825,388	+		GFF3783	0.21	-0.8
3,825,393	+		GFF3783	0.21	-0.6
3,825,413	+		GFF3783	0.23	-0.2
3,825,479	+		GFF3783	0.27	-0.7
3,825,494	+		GFF3783	0.28	-0.7
3,825,502	-		GFF3783	0.28	+2.0
3,825,541	+		GFF3783	0.30	-1.3
3,825,543	-		GFF3783	0.31	-1.4
3,825,546	+		GFF3783	0.31	-1.2
3,825,577	-		GFF3783	0.33	+1.3
3,825,592	+		GFF3783	0.34	-1.9
3,825,592	+		GFF3783	0.34	-1.8
3,825,592	+		GFF3783	0.34	+0.3
3,825,592	+		GFF3783	0.34	+0.3
3,825,599	-		GFF3783	0.34	-2.3
3,825,600	-		GFF3783	0.34	+0.7
3,825,600	-		GFF3783	0.34	-0.9
3,825,600	-		GFF3783	0.34	-0.3
3,825,600	-		GFF3783	0.34	-0.3
3,825,600	-		GFF3783	0.34	-1.7
3,825,600	-		GFF3783	0.34	-0.2
3,825,600	-		GFF3783	0.34	-0.3
3,825,600	-		GFF3783	0.34	-1.1
3,825,600	-		GFF3783	0.34	-0.4
3,825,600	-		GFF3783	0.34	-0.3
3,825,600	-		GFF3783	0.34	-0.3
3,825,602	+		GFF3783	0.34	+0.2
3,825,626	+		GFF3783	0.36	-0.4
3,825,667	-		GFF3783	0.38	-1.6
3,825,668	-		GFF3783	0.38	-0.7
3,825,724	+		GFF3783	0.42	-1.4
3,825,727	-		GFF3783	0.42	-1.1
3,825,728	+		GFF3783	0.42	-1.2
3,825,728	+		GFF3783	0.42	-0.8
3,825,776	-		GFF3783	0.45	-0.7
3,825,778	-		GFF3783	0.45	-1.1
3,825,981	+		GFF3783	0.58	+0.4
3,826,016	+		GFF3783	0.60	+0.7
3,826,016	+		GFF3783	0.60	-1.2
3,826,017	-		GFF3783	0.60	-0.7
3,826,062	-		GFF3783	0.63	-0.2
3,826,074	+		GFF3783	0.63	-0.4
3,826,074	+		GFF3783	0.63	+0.2
3,826,082	-		GFF3783	0.64	-1.4
3,826,082	-		GFF3783	0.64	-0.2
3,826,082	-		GFF3783	0.64	+1.2
3,826,082	-		GFF3783	0.64	-0.2
3,826,107	+		GFF3783	0.65	-1.5
3,826,121	-		GFF3783	0.66	-0.9
3,826,123	+		GFF3783	0.66	-0.2
3,826,131	-		GFF3783	0.67	-1.4
3,826,131	-		GFF3783	0.67	-0.3
3,826,131	-		GFF3783	0.67	+0.6
3,826,147	-		GFF3783	0.68	-1.5
3,826,168	-		GFF3783	0.69	-0.8
3,826,168	-		GFF3783	0.69	-0.7
3,826,186	+		GFF3783	0.70	-0.6
3,826,194	-		GFF3783	0.71	-0.6
3,826,196	+		GFF3783	0.71	-1.9
3,826,196	+		GFF3783	0.71	+0.4
3,826,210	-		GFF3783	0.72	-0.9
3,826,210	-		GFF3783	0.72	-0.7
3,826,228	+		GFF3783	0.73	-0.2
3,826,228	+		GFF3783	0.73	-0.9
3,826,228	+		GFF3783	0.73	-1.3
3,826,228	+		GFF3783	0.73	-0.2
3,826,228	+		GFF3783	0.73	-1.3
3,826,228	+		GFF3783	0.73	-0.4
3,826,228	+		GFF3783	0.73	-0.2
3,826,228	+		GFF3783	0.73	-1.5
3,826,228	+		GFF3783	0.73	-0.6
3,826,228	+		GFF3783	0.73	-1.7
3,826,236	-		GFF3783	0.73	-1.4
3,826,236	-		GFF3783	0.73	-1.0
3,826,236	-		GFF3783	0.73	+0.2
3,826,236	-		GFF3783	0.73	-2.1
3,826,236	-		GFF3783	0.73	-1.7
3,826,236	-		GFF3783	0.73	-1.1
3,826,236	-		GFF3783	0.73	-0.4
3,826,236	-		GFF3783	0.73	-0.6
3,826,236	-		GFF3783	0.73	-0.4
3,826,236	-		GFF3783	0.73	-0.1
3,826,241	-		GFF3783	0.74	-1.5
3,826,242	+		GFF3783	0.74	-0.7
3,826,311	+		GFF3783	0.78	-1.9
3,826,317	+		GFF3783	0.78	-1.7
3,826,325	-		GFF3783	0.79	+0.3
3,826,374	+		GFF3783	0.82	-1.1
3,826,429	+		GFF3783	0.85	+0.3
3,826,429	+		GFF3783	0.85	-0.3
3,826,430	-		GFF3783	0.85	-2.1
3,826,437	-		GFF3783	0.86	-0.4
3,826,442	-		GFF3783	0.86	-0.8
3,826,499	-		GFF3783	0.90	-0.7
3,826,509	-				+0.7
3,826,537	-				-0.6
3,826,554	-				-0.4
3,826,561	+				-1.6
3,826,561	+				+0.0
3,826,561	+				-0.8
3,826,561	+				-0.7
3,826,561	+				-0.8
3,826,561	+				-0.3
3,826,561	+				-0.9
3,826,561	+				-1.3
3,826,569	-				-0.7
3,826,569	-				-1.1
3,826,569	-				-0.3
3,826,569	-				-0.4
3,826,569	-				-1.8
3,826,569	-				-0.8
3,826,569	-				-0.7
3,826,574	+				-0.7
3,826,574	+				-1.4
3,826,574	+				-0.7
3,826,575	-				+0.4
3,826,580	+				-0.2
3,826,580	-				-1.0
3,826,646	+				-0.6
3,826,674	+				+0.4
3,826,702	+				-0.8
3,826,702	+				-0.3
3,826,702	+				-1.2
3,826,702	+				-0.6
3,826,702	+				-1.4
3,826,702	+				+0.7
3,826,708	+		GFF3784	0.12	-1.3
3,826,708	+		GFF3784	0.12	-0.7
3,826,708	+		GFF3784	0.12	-0.6
3,826,709	-		GFF3784	0.13	-0.8
3,826,710	-		GFF3784	0.13	-0.6
3,826,710	-		GFF3784	0.13	-1.3
3,826,710	-		GFF3784	0.13	-1.2
3,826,710	-		GFF3784	0.13	-0.3
3,826,716	-		GFF3784	0.15	-0.1
3,826,716	-		GFF3784	0.15	+0.3
3,826,726	-		GFF3784	0.19	-1.1
3,826,726	-		GFF3784	0.19	-0.7
3,826,729	+		GFF3784	0.20	-0.8
3,826,729	+		GFF3784	0.20	-1.2
3,826,729	+		GFF3784	0.20	-1.3
3,826,729	+		GFF3784	0.20	+2.0
3,826,729	+		GFF3784	0.20	-0.7
3,826,737	-		GFF3784	0.24	-1.1
3,826,737	-		GFF3784	0.24	-0.7
3,826,739	+		GFF3784	0.24	+1.1
3,826,817	+		GFF3784	0.55	-1.1
3,826,818	-		GFF3784	0.55	-0.0
3,826,833	+		GFF3784	0.61	+1.3
3,826,843	-		GFF3784	0.65	-1.7
3,826,857	+		GFF3784	0.71	-1.2
3,826,889	-		GFF3784	0.83	-0.2
3,827,005	+				-1.8
3,827,005	+				-0.7
3,827,005	+				-0.2
3,827,005	+				-1.3
3,827,005	+				+1.1
3,827,007	+				-0.6
3,827,010	+				-0.7
3,827,013	-				-1.7
3,827,013	-				-0.7
3,827,013	-				-1.3
3,827,013	-				+0.3
3,827,013	-				+1.3
3,827,013	-				-0.2
3,827,013	-				+0.1
3,827,013	-				+0.1
3,827,013	-				+0.4
3,827,013	-				-0.0
3,827,015	-				-1.3
3,827,017	+				-0.6
3,827,017	+				-0.8
3,827,017	+				+1.6
3,827,017	+				+0.2
3,827,024	+				-1.5
3,827,025	-				-1.2
3,827,025	-				-1.3
3,827,030	-				-0.7
3,827,032	+				+1.6
3,827,040	-				-1.2
3,827,040	-				-0.8
3,827,040	-				-1.7
3,827,040	-				+0.1
3,827,040	-				+0.8
3,827,050	-				-0.2
3,827,050	-				-0.6
3,827,059	+				-0.2
3,827,059	+				+0.1
3,827,065	+				+1.5
3,827,066	+				-1.9
3,827,067	+				-0.7
3,827,067	-				+0.1
3,827,073	-				-1.7
3,827,075	-				-1.1
3,827,075	-				+0.6
3,827,075	-				-0.8
3,827,076	+				-1.0
3,827,090	-				-1.1
3,827,101	+				-0.0
3,827,101	+				+0.4
3,827,101	+				+0.4
3,827,101	+				-1.3
3,827,104	-				-1.1
3,827,106	+				-0.8
3,827,106	+				-0.7
3,827,106	+				-0.2
3,827,106	+				-1.1
3,827,114	-				-0.6
3,827,114	-				-0.6
3,827,155	+				-0.9
3,827,155	+				-2.3
3,827,163	-				-1.6
3,827,198	+				+1.0
3,827,198	+				-1.7
3,827,198	+				-0.7
3,827,198	+				+0.1
3,827,203	+				+2.5
3,827,206	-				+0.1
3,827,206	-				+0.3
3,827,206	-				-0.4
3,827,206	-				-1.4
3,827,206	-				-0.4
3,827,206	-				-1.0
3,827,206	-				-0.3
3,827,206	-				-0.3
3,827,206	-				-0.5
3,827,213	-		GFF3785	0.10	-2.1
3,827,218	-		GFF3785	0.11	-1.0
3,827,218	-		GFF3785	0.11	-0.3
3,827,221	+		GFF3785	0.11	-0.1
3,827,232	+		GFF3785	0.12	-0.7
3,827,245	-		GFF3785	0.14	-1.7
3,827,254	+		GFF3785	0.15	-0.8
3,827,284	-		GFF3785	0.18	-0.6
3,827,285	-		GFF3785	0.18	+0.8
3,827,286	-		GFF3785	0.18	+0.3
3,827,292	+		GFF3785	0.19	-1.1
3,827,292	+		GFF3785	0.19	-0.3
3,827,295	-		GFF3785	0.19	+0.1
3,827,300	-		GFF3785	0.20	+0.5
3,827,300	-		GFF3785	0.20	-0.1
3,827,321	-		GFF3785	0.22	-1.3
3,827,339	-		GFF3785	0.24	-0.2
3,827,346	+		GFF3785	0.25	-0.9
3,827,347	-		GFF3785	0.25	+1.5
3,827,354	-		GFF3785	0.25	+0.3
3,827,354	-		GFF3785	0.25	+0.9
3,827,354	-		GFF3785	0.25	-1.1
3,827,379	-		GFF3785	0.28	+0.4
3,827,379	-		GFF3785	0.28	-1.7
3,827,379	-		GFF3785	0.28	+1.8
3,827,391	+		GFF3785	0.29	-0.4
3,827,396	+		GFF3785	0.30	+1.0
3,827,404	-		GFF3785	0.31	-0.4
3,827,463	-		GFF3785	0.37	-0.3
3,827,472	+		GFF3785	0.38	-0.7
3,827,480	-		GFF3785	0.39	-0.4
3,827,487	-		GFF3785	0.40	-0.8
3,827,489	+		GFF3785	0.40	-1.3
3,827,498	+		GFF3785	0.41	+0.8
3,827,503	-		GFF3785	0.42	+0.2
3,827,508	+		GFF3785	0.42	+1.4
3,827,508	+		GFF3785	0.42	-1.4
3,827,508	+		GFF3785	0.42	+0.2
3,827,508	+		GFF3785	0.42	+1.4
3,827,508	+		GFF3785	0.42	+0.1
3,827,516	-		GFF3785	0.43	-0.4
3,827,516	-		GFF3785	0.43	-0.3
3,827,516	-		GFF3785	0.43	-1.0
3,827,516	-		GFF3785	0.43	+0.7
3,827,516	-		GFF3785	0.43	-1.6
3,827,516	-		GFF3785	0.43	-1.4
3,827,516	-		GFF3785	0.43	-0.4
3,827,516	-		GFF3785	0.43	-1.3
3,827,516	-		GFF3785	0.43	-0.8
3,827,527	+		GFF3785	0.44	-0.4
3,827,535	-		GFF3785	0.45	-1.3
3,827,557	-		GFF3785	0.47	-0.2
3,827,558	-		GFF3785	0.47	-1.0
3,827,577	+		GFF3785	0.49	+0.8
3,827,577	+		GFF3785	0.49	-0.9
3,827,583	+		GFF3785	0.50	+0.6
3,827,590	-		GFF3785	0.51	-1.5
3,827,627	-		GFF3785	0.55	-0.7
3,827,636	+		GFF3785	0.56	-0.0
3,827,637	-		GFF3785	0.56	+0.2
3,827,649	+		GFF3785	0.57	-2.3
3,827,649	+		GFF3785	0.57	-0.8
3,827,649	+		GFF3785	0.57	-1.2
3,827,649	+		GFF3785	0.57	-0.2
3,827,651	-		GFF3785	0.57	-0.4
3,827,651	-		GFF3785	0.57	-0.9
3,827,651	-		GFF3785	0.57	+1.2