Strain Fitness in Sphingobium sp. HT1-2 around GFF3756

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,793,978	+		GFF3754	0.49	-1.0
3,793,978	+		GFF3754	0.49	+0.7
3,793,978	+		GFF3754	0.49	+0.2
3,793,986	-		GFF3754	0.50	+0.2
3,793,986	-		GFF3754	0.50	-0.3
3,793,986	-		GFF3754	0.50	+1.1
3,793,986	-		GFF3754	0.50	-0.6
3,793,986	-		GFF3754	0.50	-0.9
3,793,991	-		GFF3754	0.51	-0.5
3,793,993	+		GFF3754	0.51	-1.9
3,793,993	+		GFF3754	0.51	-0.2
3,793,993	+		GFF3754	0.51	-1.3
3,793,996	-		GFF3754	0.52	+0.8
3,794,001	-		GFF3754	0.52	-0.1
3,794,036	+		GFF3754	0.57	+0.4
3,794,047	+		GFF3754	0.58	+0.5
3,794,050	+		GFF3754	0.58	-2.1
3,794,056	+		GFF3754	0.59	-0.3
3,794,056	-		GFF3754	0.59	-1.0
3,794,058	-		GFF3754	0.59	-0.0
3,794,067	+		GFF3754	0.61	-1.1
3,794,072	+		GFF3754	0.61	-0.5
3,794,087	+		GFF3754	0.63	-0.2
3,794,090	-		GFF3754	0.64	-2.0
3,794,090	-		GFF3754	0.64	-0.8
3,794,090	-		GFF3754	0.64	+0.4
3,794,095	-		GFF3754	0.64	-0.3
3,794,108	+		GFF3754	0.66	-0.0
3,794,134	-		GFF3754	0.69	-1.3
3,794,156	-		GFF3754	0.72	-1.0
3,794,159	+		GFF3754	0.72	+0.5
3,794,167	-		GFF3754	0.73	-0.9
3,794,167	-		GFF3754	0.73	-0.9
3,794,180	+		GFF3754	0.75	-0.1
3,794,180	+		GFF3754	0.75	+0.4
3,794,183	-		GFF3754	0.75	+1.5
3,794,185	+		GFF3754	0.75	-1.8
3,794,188	-		GFF3754	0.76	+0.8
3,794,265	+		GFF3754	0.86	+1.1
3,794,265	+		GFF3754	0.86	+0.2
3,794,271	-		GFF3754	0.86	+0.6
3,794,273	-		GFF3754	0.87	-0.1
3,794,291	-		GFF3754	0.89	+1.5
3,794,319	+				-0.2
3,794,325	+				-0.7
3,794,327	-				-0.1
3,794,327	-				-0.3
3,794,364	+				+0.7
3,794,407	-				+0.1
3,794,410	+				+0.6
3,794,414	+				+0.4
3,794,430	+		GFF3755	0.12	-0.8
3,794,439	+		GFF3755	0.13	-0.7
3,794,445	+		GFF3755	0.14	-0.5
3,794,460	+		GFF3755	0.17	-0.6
3,794,460	+		GFF3755	0.17	+1.3
3,794,468	-		GFF3755	0.18	-1.7
3,794,468	-		GFF3755	0.18	+0.9
3,794,490	+		GFF3755	0.21	-0.3
3,794,501	+		GFF3755	0.23	-0.8
3,794,501	+		GFF3755	0.23	-0.7
3,794,501	+		GFF3755	0.23	-0.7
3,794,506	+		GFF3755	0.24	-1.1
3,794,506	+		GFF3755	0.24	+1.8
3,794,509	-		GFF3755	0.25	+0.2
3,794,509	-		GFF3755	0.25	-1.4
3,794,509	-		GFF3755	0.25	-1.1
3,794,516	-		GFF3755	0.26	+1.4
3,794,523	+		GFF3755	0.27	-0.3
3,794,523	+		GFF3755	0.27	-0.5
3,794,523	+		GFF3755	0.27	-1.2
3,794,523	+		GFF3755	0.27	+0.2
3,794,523	+		GFF3755	0.27	+0.4
3,794,523	+		GFF3755	0.27	-0.9
3,794,523	+		GFF3755	0.27	+0.4
3,794,523	+		GFF3755	0.27	+1.2
3,794,523	+		GFF3755	0.27	-0.3
3,794,530	+		GFF3755	0.28	-0.6
3,794,531	-		GFF3755	0.28	-2.0
3,794,531	-		GFF3755	0.28	-1.8
3,794,531	-		GFF3755	0.28	-1.1
3,794,531	-		GFF3755	0.28	+0.2
3,794,531	-		GFF3755	0.28	-1.3
3,794,531	-		GFF3755	0.28	-0.8
3,794,531	-		GFF3755	0.28	-0.9
3,794,531	-		GFF3755	0.28	-0.2
3,794,532	-		GFF3755	0.28	+0.8
3,794,548	-		GFF3755	0.31	+0.7
3,794,548	-		GFF3755	0.31	-0.2
3,794,549	-		GFF3755	0.31	+0.9
3,794,551	-		GFF3755	0.32	-1.4
3,794,556	-		GFF3755	0.33	+1.2
3,794,556	-		GFF3755	0.33	-1.1
3,794,556	-		GFF3755	0.33	-1.9
3,794,605	-		GFF3755	0.41	-1.8
3,794,614	+		GFF3755	0.42	-0.1
3,794,622	-		GFF3755	0.43	+0.1
3,794,624	+		GFF3755	0.44	-0.5
3,794,626	-		GFF3755	0.44	+0.8
3,794,634	+		GFF3755	0.46	-0.2
3,794,656	-		GFF3755	0.49	-0.9
3,794,678	+		GFF3755	0.53	+0.4
3,794,684	+		GFF3755	0.54	+0.7
3,794,684	+		GFF3755	0.54	-1.1
3,794,684	+		GFF3755	0.54	-0.1
3,794,692	-		GFF3755	0.55	-0.1
3,794,692	-		GFF3755	0.55	-0.5
3,794,692	-		GFF3755	0.55	-1.7
3,794,692	-		GFF3755	0.55	+0.1
3,794,692	-		GFF3755	0.55	-0.5
3,794,692	-		GFF3755	0.55	-1.6
3,794,692	-		GFF3755	0.55	-0.8
3,794,692	-		GFF3755	0.55	-0.3
3,794,692	-		GFF3755	0.55	+0.4
3,794,695	-		GFF3755	0.56	-0.8
3,794,717	-		GFF3755	0.59	-0.7
3,794,723	-		GFF3755	0.60	+0.8
3,794,726	+		GFF3755	0.61	+0.4
3,794,743	+		GFF3755	0.64	-0.8
3,794,764	-		GFF3755	0.67	-0.4
3,794,784	+		GFF3755	0.70	-1.2
3,794,787	-		GFF3755	0.71	-1.7
3,794,790	+		GFF3755	0.71	-0.1
3,794,803	+		GFF3755	0.74	-0.4
3,794,805	+		GFF3755	0.74	+0.2
3,794,805	+		GFF3755	0.74	+0.2
3,794,811	-		GFF3755	0.75	-2.2
3,794,813	+		GFF3755	0.75	-1.0
3,794,813	+		GFF3755	0.75	+1.0
3,794,813	-		GFF3755	0.75	-2.4
3,794,813	-		GFF3755	0.75	-0.8
3,794,831	+		GFF3755	0.78	+0.7
3,794,831	+		GFF3755	0.78	-1.7
3,794,839	-		GFF3755	0.80	+0.6
3,794,839	-		GFF3755	0.80	-0.0
3,794,849	+		GFF3755	0.81	+1.2
3,794,857	-		GFF3755	0.83	-0.2
3,794,862	-		GFF3755	0.83	+0.6
3,794,869	+		GFF3755	0.85	-0.8
3,794,869	+		GFF3755	0.85	+0.3
3,794,869	+		GFF3755	0.85	+0.5
3,794,879	+		GFF3755	0.86	-0.8
3,794,879	+		GFF3755	0.86	-0.7
3,794,879	+		GFF3755	0.86	-1.7
3,794,882	-		GFF3755	0.87	+0.8
3,794,884	+		GFF3755	0.87	-2.0
3,794,884	+		GFF3755	0.87	+0.2
3,794,884	+		GFF3755	0.87	-0.5
3,794,884	+		GFF3755	0.87	-0.5
3,794,884	+		GFF3755	0.87	+0.0
3,794,884	+		GFF3755	0.87	-0.2
3,794,884	+		GFF3755	0.87	-1.3
3,794,884	+		GFF3755	0.87	-0.6
3,794,884	+		GFF3755	0.87	-0.5
3,794,884	+		GFF3755	0.87	+0.6
3,794,884	+		GFF3755	0.87	-0.2
3,794,884	+		GFF3755	0.87	+0.2
3,794,884	+		GFF3755	0.87	-0.5
3,794,884	+		GFF3755	0.87	-1.1
3,794,884	+		GFF3755	0.87	-0.7
3,794,884	+		GFF3755	0.87	-0.7
3,794,884	+		GFF3755	0.87	-2.0
3,794,884	+		GFF3755	0.87	+0.0
3,794,884	+		GFF3755	0.87	+0.2
3,794,884	+		GFF3755	0.87	-1.1
3,794,884	+		GFF3755	0.87	-0.3
3,794,884	+		GFF3755	0.87	+0.2
3,794,884	+		GFF3755	0.87	-1.8
3,794,884	+		GFF3755	0.87	+0.0
3,794,884	+		GFF3755	0.87	+0.1
3,794,887	-		GFF3755	0.88	-0.3
3,794,887	-		GFF3755	0.88	-0.8
3,794,887	-		GFF3755	0.88	-2.0
3,794,892	-		GFF3755	0.89	-0.2
3,794,892	-		GFF3755	0.89	-0.3
3,794,892	-		GFF3755	0.89	-0.8
3,794,892	-		GFF3755	0.89	-1.0
3,794,892	-		GFF3755	0.89	+0.4
3,794,892	-		GFF3755	0.89	-1.2
3,794,892	-		GFF3755	0.89	+0.2
3,794,892	-		GFF3755	0.89	-0.2
3,794,892	-		GFF3755	0.89	-1.3
3,794,892	-		GFF3755	0.89	+0.9
3,794,892	-		GFF3755	0.89	-0.6
3,794,892	-		GFF3755	0.89	-0.9
3,794,892	-		GFF3755	0.89	-1.6
3,794,892	-		GFF3755	0.89	-0.8
3,794,892	-		GFF3755	0.89	-2.0
3,794,892	-		GFF3755	0.89	+0.6
3,794,892	-		GFF3755	0.89	-0.8
3,794,892	-		GFF3755	0.89	+0.3
3,794,892	-		GFF3755	0.89	+0.8
3,794,892	-		GFF3755	0.89	-1.5
3,794,892	-		GFF3755	0.89	-0.5
3,794,892	-		GFF3755	0.89	+0.6
3,794,892	-		GFF3755	0.89	-0.1
3,794,892	-		GFF3755	0.89	-0.3
3,794,892	-		GFF3755	0.89	-0.3
3,794,892	-		GFF3755	0.89	+0.4
3,794,892	-		GFF3755	0.89	+0.8
3,794,892	-		GFF3755	0.89	-1.1
3,794,892	-		GFF3755	0.89	-0.5
3,794,892	-		GFF3755	0.89	-0.6
3,794,892	-		GFF3755	0.89	+0.4
3,794,892	-		GFF3755	0.89	+0.2
3,794,921	-				+1.1
3,794,921	-				-0.0
3,794,939	+				-1.2
3,794,944	+				-0.4
3,794,944	+				-0.3
3,794,945	-				+0.5
3,794,949	+				-0.9
3,794,949	+				-0.3
3,794,957	-				+0.1
3,794,957	-				-1.0
3,794,957	-				-0.5
3,794,966	-				-0.7
3,794,966	-				-0.3
3,795,868	-				+0.5
3,795,868	-				-0.8
3,795,893	+		GFF3757	0.12	+2.0
3,795,913	+		GFF3757	0.17	-1.2
3,795,927	-		GFF3757	0.20	-1.3
3,795,941	+		GFF3757	0.23	-1.6
3,795,980	-		GFF3757	0.31	-0.5
3,795,999	-		GFF3757	0.35	-0.8
3,796,015	-		GFF3757	0.39	-0.2
3,796,030	-		GFF3757	0.42	-1.5
3,796,040	-		GFF3757	0.44	-2.1
3,796,048	-		GFF3757	0.46	-0.7
3,796,048	-		GFF3757	0.46	-0.9
3,796,048	-		GFF3757	0.46	-0.1
3,796,048	-		GFF3757	0.46	+0.2
3,796,065	-		GFF3757	0.50	-0.5
3,796,065	-		GFF3757	0.50	-2.1
3,796,130	-		GFF3757	0.64	+0.1
3,796,130	-		GFF3757	0.64	-0.4
3,796,152	-		GFF3757	0.69	-1.1
3,796,152	-		GFF3757	0.69	+0.1
3,796,247	-		GFF3757	0.89	-1.4
3,796,294	-				+0.6
3,796,298	-				-1.6
3,796,311	-				-0.3
3,796,311	-				-0.9
3,796,321	+				-0.4
3,796,331	+				-0.6
3,796,333	+				-1.0
3,796,333	+				-0.2
3,796,340	+				+0.7
3,796,340	+				-0.9
3,796,348	-				-1.9
3,796,356	+				-1.1
3,796,356	+				-0.3
3,796,357	+				+0.1
3,796,357	+				+0.4
3,796,357	+				+0.5
3,796,364	-				-0.1
3,796,373	+				-0.3
3,796,373	+				+1.3
3,796,373	+				-1.2
3,796,380	+				+1.0
3,796,380	+				-0.6
3,796,380	+				-0.6
3,796,380	+				+0.3
3,796,380	+				-1.0
3,796,380	+				+0.7
3,796,380	+				-0.3
3,796,388	-				-0.8
3,796,388	-				-1.5
3,796,388	-				-0.0
3,796,388	-				-0.8
3,796,388	-				-0.1
3,796,388	-				-0.1
3,796,388	-				-1.9
3,796,388	-				+2.4
3,796,406	+				-0.8
3,796,406	+				-0.7
3,796,416	-				-0.5
3,796,421	-				-0.4
3,796,421	-				-0.3
3,796,439	+				-0.6
3,796,447	-				+0.7
3,796,452	-				-1.0
3,796,468	+				-1.4
3,796,476	-				+1.3
3,796,476	-				-1.1
3,796,476	-				+0.2
3,796,477	+				-0.5
3,796,477	+				-1.2
3,796,477	+				+1.4
3,796,477	+				-0.2
3,796,477	+				+1.0
3,796,477	+				-0.1
3,796,477	+				+0.4
3,796,477	+				-0.5
3,796,477	+				-1.1
3,796,477	+				+0.9
3,796,477	+				+0.9
3,796,477	+				-1.3
3,796,477	+				-0.1
3,796,477	+				-0.1
3,796,477	+				-2.3
3,796,477	+				+0.7
3,796,477	+				-0.3
3,796,477	+				+0.8
3,796,477	+				+0.1
3,796,477	+				-0.3
3,796,477	+				-0.5
3,796,477	+				-0.8
3,796,478	+				-0.7
3,796,485	-				-0.3
3,796,485	-				-0.6
3,796,485	-				-0.3
3,796,485	-				-1.2
3,796,485	-				+0.1
3,796,485	-				-0.1
3,796,485	-				+0.2
3,796,485	-				-0.6
3,796,485	-				-0.6
3,796,485	-				-0.9
3,796,485	-				-1.8
3,796,485	-				-1.8
3,796,485	-				-0.6
3,796,485	-				-2.1
3,796,496	+				-0.2
3,796,510	+				-1.1
3,796,513	+				+2.5
3,796,518	+				+0.7
3,796,519	+				-1.2
3,796,519	+				+1.4
3,796,526	-				+0.2
3,796,534	+				-0.7
3,796,580	+		GFF3758	0.16	-1.6
3,796,588	-		GFF3758	0.17	+0.1
3,796,588	-		GFF3758	0.17	+0.4
3,796,593	-		GFF3758	0.18	-0.8
3,796,593	-		GFF3758	0.18	-0.2
3,796,609	-		GFF3758	0.21	-0.7
3,796,626	+		GFF3758	0.24	-0.5
3,796,626	+		GFF3758	0.24	-0.2
3,796,651	-		GFF3758	0.29	-1.3
3,796,688	+		GFF3758	0.35	-0.8
3,796,720	-		GFF3758	0.41	-0.9
3,796,729	-		GFF3758	0.42	-0.0
3,796,767	+		GFF3758	0.49	-0.6
3,796,783	-		GFF3758	0.52	-0.7
3,796,783	-		GFF3758	0.52	+0.3
3,796,783	-		GFF3758	0.52	+0.1
3,796,784	+		GFF3758	0.52	-1.8
3,796,784	+		GFF3758	0.52	+1.0
3,796,784	+		GFF3758	0.52	+0.3
3,796,792	-		GFF3758	0.53	+0.3
3,796,792	-		GFF3758	0.53	+0.2
3,796,802	-		GFF3758	0.55	-1.4