Strain Fitness in Sphingobium sp. HT1-2 around GFF3731

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,773,550	+		GFF3729	0.65	-1.3
3,773,556	-		GFF3729	0.66	-0.5
3,773,558	-		GFF3729	0.66	-0.8
3,773,558	-		GFF3729	0.66	-0.2
3,773,584	+		GFF3729	0.68	+0.8
3,773,622	+		GFF3729	0.72	+1.1
3,773,666	-		GFF3729	0.76	-1.8
3,773,668	+		GFF3729	0.77	-0.3
3,773,668	+		GFF3729	0.77	-1.9
3,773,675	+		GFF3729	0.77	+0.9
3,773,676	-		GFF3729	0.77	-0.8
3,773,679	+		GFF3729	0.78	-1.5
3,773,679	+		GFF3729	0.78	+0.5
3,773,680	+		GFF3729	0.78	-2.4
3,773,683	-		GFF3729	0.78	+1.1
3,773,687	-		GFF3729	0.79	-0.0
3,773,688	-		GFF3729	0.79	-0.7
3,773,692	+		GFF3729	0.79	+0.4
3,773,694	+		GFF3729	0.79	-0.7
3,773,694	+		GFF3729	0.79	+0.0
3,773,702	-		GFF3729	0.80	-0.6
3,773,702	-		GFF3729	0.80	+0.4
3,773,702	-		GFF3729	0.80	-0.6
3,773,728	+		GFF3729	0.83	-1.5
3,773,743	-		GFF3729	0.84	-0.2
3,773,743	-		GFF3729	0.84	-1.0
3,773,753	-		GFF3729	0.85	-1.5
3,773,758	-		GFF3729	0.86	-1.0
3,773,768	-		GFF3729	0.87	+0.9
3,773,811	-				+0.1
3,773,830	+				-0.2
3,773,832	-				+0.1
3,773,854	+				-0.8
3,773,875	-				-1.4
3,773,875	-				-0.2
3,773,885	+				-0.1
3,773,885	-				-0.4
3,773,887	+				-0.2
3,773,887	+				+1.2
3,773,887	+				+0.1
3,773,895	-				-0.9
3,773,905	+				-0.8
3,773,905	+				+0.5
3,773,913	-				-1.4
3,773,955	+				-0.6
3,773,955	+				-0.8
3,773,955	+				-0.3
3,773,958	-				+0.9
3,773,963	-				-1.4
3,773,963	-				-1.6
3,773,963	-				-0.8
3,773,994	+				-2.3
3,773,994	+				-0.2
3,773,999	+				+1.1
3,774,002	-				+0.2
3,774,002	-				-1.5
3,774,004	+				+0.6
3,774,004	+				+0.2
3,774,004	+				-0.6
3,774,012	-		GFF3730	0.11	-1.0
3,774,012	-		GFF3730	0.11	-0.3
3,774,012	-		GFF3730	0.11	-1.5
3,774,040	+		GFF3730	0.16	+0.4
3,774,102	+		GFF3730	0.26	+0.1
3,774,102	+		GFF3730	0.26	-0.2
3,774,102	+		GFF3730	0.26	-1.4
3,774,102	+		GFF3730	0.26	-0.7
3,774,102	+		GFF3730	0.26	-0.7
3,774,102	+		GFF3730	0.26	+0.2
3,774,102	+		GFF3730	0.26	+0.6
3,774,102	+		GFF3730	0.26	+1.1
3,774,102	+		GFF3730	0.26	+0.7
3,774,107	+		GFF3730	0.27	-1.6
3,774,108	-		GFF3730	0.27	+0.1
3,774,110	-		GFF3730	0.27	-0.3
3,774,110	-		GFF3730	0.27	-0.6
3,774,110	-		GFF3730	0.27	-2.2
3,774,110	-		GFF3730	0.27	+1.1
3,774,110	-		GFF3730	0.27	-1.6
3,774,110	-		GFF3730	0.27	+0.7
3,774,110	-		GFF3730	0.27	+1.0
3,774,110	-		GFF3730	0.27	-0.1
3,774,110	-		GFF3730	0.27	+0.1
3,774,112	+		GFF3730	0.28	-0.2
3,774,120	-		GFF3730	0.29	+0.1
3,774,137	-		GFF3730	0.32	-1.3
3,774,155	-		GFF3730	0.35	-0.7
3,774,237	-		GFF3730	0.49	-0.8
3,774,264	+		GFF3730	0.53	-0.3
3,774,277	-		GFF3730	0.56	-0.3
3,774,277	-		GFF3730	0.56	+1.2
3,774,277	-		GFF3730	0.56	-0.7
3,774,277	-		GFF3730	0.56	-0.6
3,774,288	+		GFF3730	0.58	+0.3
3,774,288	+		GFF3730	0.58	-1.4
3,774,293	+		GFF3730	0.58	-0.3
3,774,296	-		GFF3730	0.59	-1.0
3,774,301	-		GFF3730	0.60	-1.1
3,774,301	-		GFF3730	0.60	-1.9
3,774,303	+		GFF3730	0.60	-0.8
3,774,331	-		GFF3730	0.65	-0.7
3,774,348	+		GFF3730	0.68	-0.8
3,774,355	+		GFF3730	0.69	-0.2
3,774,369	+		GFF3730	0.71	-1.5
3,774,369	+		GFF3730	0.71	+0.8
3,774,369	+		GFF3730	0.71	+0.2
3,774,377	-		GFF3730	0.73	-1.1
3,774,377	-		GFF3730	0.73	+0.7
3,774,379	+		GFF3730	0.73	-0.2
3,774,379	+		GFF3730	0.73	-0.6
3,774,379	+		GFF3730	0.73	+0.3
3,774,379	+		GFF3730	0.73	-0.8
3,774,379	+		GFF3730	0.73	+0.8
3,774,379	+		GFF3730	0.73	+0.6
3,774,379	+		GFF3730	0.73	-0.2
3,774,379	+		GFF3730	0.73	-0.5
3,774,386	+		GFF3730	0.74	-0.2
3,774,387	-		GFF3730	0.74	-0.2
3,774,387	-		GFF3730	0.74	-0.2
3,774,387	-		GFF3730	0.74	-0.7
3,774,387	-		GFF3730	0.74	-0.2
3,774,387	-		GFF3730	0.74	-1.8
3,774,387	-		GFF3730	0.74	+0.1
3,774,387	-		GFF3730	0.74	-1.3
3,774,387	-		GFF3730	0.74	-0.8
3,774,387	-		GFF3730	0.74	-0.3
3,774,415	+		GFF3730	0.79	-0.7
3,774,415	+		GFF3730	0.79	+0.5
3,774,423	-		GFF3730	0.80	+0.2
3,774,428	-		GFF3730	0.81	-0.9
3,774,430	-		GFF3730	0.82	-1.8
3,774,453	-		GFF3730	0.85	-1.7
3,774,463	-		GFF3730	0.87	-0.8
3,774,465	+		GFF3730	0.87	+1.8
3,774,465	+		GFF3730	0.87	+0.2
3,774,467	+		GFF3730	0.88	-1.4
3,774,507	+				-0.2
3,774,519	+				+0.6
3,774,519	-				+1.1
3,774,526	+				-1.2
3,774,526	+				+0.6
3,774,532	+				+0.2
3,774,532	+				-1.8
3,774,532	+				-0.1
3,774,532	+				+0.1
3,774,532	+				-1.7
3,774,532	+				-0.9
3,774,532	+				-0.2
3,774,532	+				-0.7
3,774,534	-				+1.7
3,774,534	-				-0.5
3,774,534	-				-1.1
3,774,540	-				+1.2
3,774,540	-				-0.3
3,774,540	-				+0.0
3,774,540	-				-0.2
3,774,540	-				-0.5
3,774,540	-				-0.9
3,774,540	-				+0.4
3,774,540	-				-1.8
3,774,547	+				-1.2
3,774,558	+				-1.7
3,774,558	+				-1.0
3,774,558	+				-0.8
3,774,558	+				+1.1
3,774,559	+				-0.2
3,774,559	+				-0.6
3,774,560	-				+1.6
3,774,566	-				-0.6
3,774,566	-				+1.2
3,774,566	-				-2.0
3,774,566	-				+0.1
3,774,566	-				+0.7
3,774,566	-				-0.3
3,774,578	-				-0.5
3,774,578	-				+0.6
3,774,585	+				-0.0
3,774,588	-				-1.8
3,774,594	-				-0.0
3,774,595	+				-0.5
3,774,601	-				-0.6
3,774,622	-				-0.5
3,774,626	+				-1.2
3,774,634	-				+1.4
3,774,641	+				+0.5
3,774,649	-				-0.8
3,774,674	+		GFF3731	0.10	-0.1
3,774,674	+		GFF3731	0.10	-1.0
3,774,682	-		GFF3731	0.11	-1.7
3,774,682	-		GFF3731	0.11	-2.3
3,774,682	-		GFF3731	0.11	+0.6
3,774,696	-		GFF3731	0.12	-0.6
3,774,696	-		GFF3731	0.12	+0.8
3,774,701	-		GFF3731	0.12	+0.7
3,774,701	-		GFF3731	0.12	-0.2
3,774,704	+		GFF3731	0.13	-0.7
3,774,716	-		GFF3731	0.14	-0.5
3,774,732	-		GFF3731	0.15	-1.3
3,774,752	+		GFF3731	0.16	-0.3
3,774,759	-		GFF3731	0.17	-1.9
3,774,762	+		GFF3731	0.17	+0.7
3,774,767	+		GFF3731	0.17	+1.4
3,774,781	+		GFF3731	0.19	-1.3
3,774,813	-		GFF3731	0.21	-0.7
3,774,816	+		GFF3731	0.21	+0.7
3,774,816	+		GFF3731	0.21	+0.7
3,774,816	+		GFF3731	0.21	+0.6
3,774,816	+		GFF3731	0.21	-1.3
3,774,816	+		GFF3731	0.21	+0.8
3,774,819	-		GFF3731	0.21	-0.5
3,774,824	-		GFF3731	0.22	-0.5
3,774,824	-		GFF3731	0.22	-0.4
3,774,824	-		GFF3731	0.22	+0.2
3,774,824	-		GFF3731	0.22	+0.2
3,774,824	-		GFF3731	0.22	-0.3
3,774,824	-		GFF3731	0.22	-0.2
3,774,824	-		GFF3731	0.22	-1.5
3,774,824	-		GFF3731	0.22	-0.6
3,774,824	-		GFF3731	0.22	-1.4
3,774,824	-		GFF3731	0.22	-0.6
3,774,824	-		GFF3731	0.22	+0.5
3,774,829	-		GFF3731	0.22	-1.3
3,774,831	+		GFF3731	0.22	+1.0
3,774,834	-		GFF3731	0.22	-0.7
3,774,841	+		GFF3731	0.23	-0.0
3,774,849	-		GFF3731	0.24	+0.4
3,774,866	+		GFF3731	0.25	+0.5
3,774,866	+		GFF3731	0.25	+0.9
3,774,870	+		GFF3731	0.25	+0.2
3,774,874	-		GFF3731	0.26	-1.5
3,774,892	+		GFF3731	0.27	-1.2
3,774,929	-		GFF3731	0.30	+0.9
3,774,929	-		GFF3731	0.30	+0.7
3,774,936	+		GFF3731	0.30	+0.8
3,774,939	-		GFF3731	0.30	-0.2
3,774,944	-		GFF3731	0.31	+1.1
3,774,944	-		GFF3731	0.31	-0.2
3,774,961	-		GFF3731	0.32	-0.5
3,774,972	+		GFF3731	0.33	+0.1
3,774,977	+		GFF3731	0.33	+0.5
3,774,985	-		GFF3731	0.34	+0.0
3,774,985	-		GFF3731	0.34	-1.0
3,775,005	+		GFF3731	0.35	+1.7
3,775,005	+		GFF3731	0.35	+0.2
3,775,013	-		GFF3731	0.36	+0.4
3,775,018	-		GFF3731	0.36	-0.0
3,775,026	+		GFF3731	0.37	-0.5
3,775,069	-		GFF3731	0.40	-1.8
3,775,075	+		GFF3731	0.41	-1.5
3,775,083	-		GFF3731	0.41	+0.5
3,775,112	+		GFF3731	0.43	-0.2
3,775,117	+		GFF3731	0.44	-0.9
3,775,125	-		GFF3731	0.44	+1.2
3,775,136	+		GFF3731	0.45	-1.0
3,775,144	+		GFF3731	0.46	+2.2
3,775,151	-		GFF3731	0.46	-2.0
3,775,152	-		GFF3731	0.46	-1.4
3,775,175	-		GFF3731	0.48	+0.7
3,775,180	+		GFF3731	0.49	-0.2
3,775,180	+		GFF3731	0.49	-0.0
3,775,180	+		GFF3731	0.49	+0.2
3,775,188	-		GFF3731	0.49	+0.4
3,775,204	-		GFF3731	0.50	-0.1
3,775,249	-		GFF3731	0.54	+1.5
3,775,299	-		GFF3731	0.57	-1.6
3,775,313	+		GFF3731	0.59	+0.5
3,775,313	+		GFF3731	0.59	-1.1
3,775,313	+		GFF3731	0.59	+0.5
3,775,321	-		GFF3731	0.59	-0.7
3,775,321	-		GFF3731	0.59	-2.6
3,775,328	+		GFF3731	0.60	+0.3
3,775,328	+		GFF3731	0.60	-1.0
3,775,328	+		GFF3731	0.60	-1.5
3,775,328	+		GFF3731	0.60	-0.2
3,775,328	+		GFF3731	0.60	-0.8
3,775,328	+		GFF3731	0.60	-0.9
3,775,328	+		GFF3731	0.60	-0.7
3,775,328	+		GFF3731	0.60	-0.7
3,775,328	+		GFF3731	0.60	-1.5
3,775,328	+		GFF3731	0.60	-0.5
3,775,328	+		GFF3731	0.60	+0.1
3,775,336	-		GFF3731	0.60	-1.1
3,775,336	-		GFF3731	0.60	+0.3
3,775,336	-		GFF3731	0.60	-1.2
3,775,336	-		GFF3731	0.60	-0.2
3,775,336	-		GFF3731	0.60	-0.7
3,775,336	-		GFF3731	0.60	-1.6
3,775,336	-		GFF3731	0.60	+0.4
3,775,336	-		GFF3731	0.60	-0.5
3,775,338	+		GFF3731	0.60	-1.1
3,775,382	+		GFF3731	0.64	-1.3
3,775,383	-		GFF3731	0.64	+0.8
3,775,419	+		GFF3731	0.67	+1.1
3,775,428	+		GFF3731	0.67	-0.4
3,775,428	+		GFF3731	0.67	-0.8
3,775,443	-		GFF3731	0.68	+0.7
3,775,448	-		GFF3731	0.69	-1.8
3,775,465	+		GFF3731	0.70	-1.7
3,775,465	+		GFF3731	0.70	+0.5
3,775,467	+		GFF3731	0.70	-1.6
3,775,467	+		GFF3731	0.70	-0.8
3,775,467	+		GFF3731	0.70	-0.2
3,775,467	+		GFF3731	0.70	+0.1
3,775,467	+		GFF3731	0.70	-0.2
3,775,467	+		GFF3731	0.70	-0.2
3,775,467	+		GFF3731	0.70	+0.5
3,775,467	+		GFF3731	0.70	+0.5
3,775,467	+		GFF3731	0.70	+0.9
3,775,467	+		GFF3731	0.70	+0.7
3,775,467	+		GFF3731	0.70	-0.8
3,775,467	+		GFF3731	0.70	-1.0
3,775,467	+		GFF3731	0.70	-1.0
3,775,467	+		GFF3731	0.70	-1.7
3,775,467	+		GFF3731	0.70	+0.8
3,775,467	+		GFF3731	0.70	-1.1
3,775,467	+		GFF3731	0.70	-0.3
3,775,475	-		GFF3731	0.71	+0.4
3,775,475	-		GFF3731	0.71	+1.0
3,775,475	-		GFF3731	0.71	-2.3
3,775,475	-		GFF3731	0.71	-0.5
3,775,475	-		GFF3731	0.71	-0.7
3,775,475	-		GFF3731	0.71	-0.3
3,775,475	-		GFF3731	0.71	-1.6
3,775,475	-		GFF3731	0.71	-1.5
3,775,475	-		GFF3731	0.71	-1.5
3,775,475	-		GFF3731	0.71	+1.2
3,775,475	-		GFF3731	0.71	+0.5
3,775,475	-		GFF3731	0.71	-1.2
3,775,475	-		GFF3731	0.71	+1.5
3,775,475	-		GFF3731	0.71	-1.3
3,775,475	-		GFF3731	0.71	+0.2
3,775,475	-		GFF3731	0.71	-0.0
3,775,475	-		GFF3731	0.71	+0.6
3,775,475	-		GFF3731	0.71	-0.9
3,775,475	-		GFF3731	0.71	+0.2
3,775,475	-		GFF3731	0.71	-0.3
3,775,475	-		GFF3731	0.71	-1.3
3,775,475	-		GFF3731	0.71	+0.1
3,775,480	-		GFF3731	0.71	-1.1
3,775,505	+		GFF3731	0.73	-0.5
3,775,554	+		GFF3731	0.77	-0.7
3,775,599	+		GFF3731	0.80	+1.0
3,775,605	+		GFF3731	0.81	+0.6
3,775,614	-		GFF3731	0.81	-0.3
3,775,623	+		GFF3731	0.82	-0.3
3,775,631	-		GFF3731	0.82	-0.8
3,775,647	+		GFF3731	0.84	+2.1
3,775,654	+		GFF3731	0.84	+1.0
3,775,657	+		GFF3731	0.84	-0.6
3,775,674	+		GFF3731	0.86	-1.1
3,775,674	+		GFF3731	0.86	-1.7
3,775,674	+		GFF3731	0.86	-0.3
3,775,682	-		GFF3731	0.86	-0.8
3,775,711	-		GFF3731	0.88	+0.4
3,775,711	-		GFF3731	0.88	-1.2
3,775,713	+		GFF3731	0.89	-1.4
3,775,716	-		GFF3731	0.89	-0.3
3,775,721	+		GFF3731	0.89	+0.8
3,775,759	+				-0.1
3,775,767	-				-0.5
3,775,767	-				-0.2
3,775,767	-				+0.4
3,775,785	-				-0.6
3,775,785	-				+1.1
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