Strain Fitness in Sphingobium sp. HT1-2 around GFF3723

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,763,680	-		GFF3721	0.89	-1.8
3,763,701	-				-1.1
3,763,761	+				+0.7
3,763,761	+				+0.7
3,763,766	+				-0.7
3,763,769	-				-1.2
3,763,776	+				-0.6
3,763,784	+				+1.1
3,763,784	+				+0.2
3,763,784	-				+0.4
3,763,784	-				-0.7
3,763,784	-				-1.4
3,763,789	+				-1.1
3,763,789	+				+1.3
3,763,789	+				-0.7
3,763,789	+				+0.4
3,763,789	+				-1.1
3,763,792	-				-0.5
3,763,797	-				-0.5
3,763,797	-				-1.0
3,763,815	+				+0.5
3,763,823	-				-0.8
3,763,823	-				+0.6
3,763,823	-				+2.1
3,763,823	-				-0.7
3,763,831	-				-1.5
3,763,831	-				+1.5
3,763,831	-				+0.3
3,763,847	+				-1.1
3,763,850	-				-1.1
3,763,865	-				-1.4
3,763,868	-				-0.9
3,763,875	-				-0.3
3,763,875	-				-1.8
3,763,885	-				-0.6
3,763,899	+				+0.8
3,763,907	-				-1.2
3,763,909	-				+0.4
3,763,916	-				+0.7
3,763,921	-				+0.3
3,763,926	+				-1.1
3,763,926	-				+0.2
3,763,926	-				-0.3
3,763,934	-				-0.7
3,763,945	-				-0.5
3,763,951	+				+1.6
3,763,951	+				-1.7
3,763,951	-				-0.1
3,763,967	+				+1.4
3,763,967	+				-0.7
3,763,975	-				-0.3
3,763,980	-				-0.3
3,764,001	-		GFF3722	0.11	-0.2
3,764,004	+		GFF3722	0.12	+0.0
3,764,006	+		GFF3722	0.12	-1.2
3,764,014	-		GFF3722	0.13	-0.0
3,764,027	+		GFF3722	0.15	-0.0
3,764,027	+		GFF3722	0.15	-1.6
3,764,041	+		GFF3722	0.17	+0.1
3,764,041	+		GFF3722	0.17	+1.2
3,764,041	+		GFF3722	0.17	-0.3
3,764,041	+		GFF3722	0.17	-1.1
3,764,041	+		GFF3722	0.17	+0.4
3,764,041	+		GFF3722	0.17	+1.1
3,764,049	-		GFF3722	0.18	-0.6
3,764,049	-		GFF3722	0.18	-0.5
3,764,072	-		GFF3722	0.21	+0.6
3,764,106	+		GFF3722	0.25	-1.0
3,764,106	+		GFF3722	0.25	-1.3
3,764,114	-		GFF3722	0.27	-0.5
3,764,137	+		GFF3722	0.30	+0.2
3,764,142	+		GFF3722	0.30	-1.2
3,764,144	+		GFF3722	0.31	-0.1
3,764,149	+		GFF3722	0.31	-1.8
3,764,150	-		GFF3722	0.31	-0.5
3,764,199	+		GFF3722	0.38	-1.4
3,764,202	+		GFF3722	0.38	-0.5
3,764,202	+		GFF3722	0.38	-1.0
3,764,204	+		GFF3722	0.39	-1.3
3,764,204	+		GFF3722	0.39	+1.2
3,764,204	+		GFF3722	0.39	-0.6
3,764,209	+		GFF3722	0.39	-0.7
3,764,209	+		GFF3722	0.39	+0.5
3,764,209	+		GFF3722	0.39	+0.3
3,764,212	-		GFF3722	0.40	-0.5
3,764,212	-		GFF3722	0.40	+0.1
3,764,212	-		GFF3722	0.40	-1.8
3,764,212	-		GFF3722	0.40	-0.7
3,764,217	-		GFF3722	0.41	-1.1
3,764,217	-		GFF3722	0.41	-2.1
3,764,217	-		GFF3722	0.41	+0.0
3,764,217	-		GFF3722	0.41	-1.0
3,764,222	+		GFF3722	0.41	-1.9
3,764,222	-		GFF3722	0.41	+0.2
3,764,230	-		GFF3722	0.42	+1.4
3,764,256	-		GFF3722	0.46	-0.6
3,764,309	+		GFF3722	0.53	+0.2
3,764,317	-		GFF3722	0.54	-0.8
3,764,319	+		GFF3722	0.54	-0.4
3,764,322	-		GFF3722	0.55	-0.8
3,764,322	-		GFF3722	0.55	-0.6
3,764,327	-		GFF3722	0.55	-0.7
3,764,327	-		GFF3722	0.55	+0.2
3,764,368	+		GFF3722	0.61	+0.4
3,764,368	+		GFF3722	0.61	-0.2
3,764,368	+		GFF3722	0.61	+0.3
3,764,376	+		GFF3722	0.62	-0.5
3,764,379	-		GFF3722	0.62	-0.9
3,764,384	-		GFF3722	0.63	-0.1
3,764,389	-		GFF3722	0.64	-0.0
3,764,391	+		GFF3722	0.64	+0.1
3,764,391	+		GFF3722	0.64	+1.0
3,764,391	+		GFF3722	0.64	-0.1
3,764,391	+		GFF3722	0.64	+0.2
3,764,391	+		GFF3722	0.64	-0.8
3,764,391	+		GFF3722	0.64	+0.2
3,764,391	+		GFF3722	0.64	+1.2
3,764,391	+		GFF3722	0.64	-0.2
3,764,391	+		GFF3722	0.64	-0.8
3,764,391	+		GFF3722	0.64	+0.3
3,764,391	+		GFF3722	0.64	-1.0
3,764,396	+		GFF3722	0.65	+0.3
3,764,396	+		GFF3722	0.65	-0.3
3,764,396	+		GFF3722	0.65	-0.0
3,764,396	+		GFF3722	0.65	+1.9
3,764,396	+		GFF3722	0.65	-0.9
3,764,396	+		GFF3722	0.65	+1.5
3,764,396	+		GFF3722	0.65	+1.6
3,764,396	+		GFF3722	0.65	+0.2
3,764,396	+		GFF3722	0.65	-0.3
3,764,396	+		GFF3722	0.65	+1.2
3,764,399	-		GFF3722	0.65	+0.2
3,764,399	-		GFF3722	0.65	-1.0
3,764,399	-		GFF3722	0.65	-1.1
3,764,399	-		GFF3722	0.65	-0.7
3,764,399	-		GFF3722	0.65	+0.2
3,764,399	-		GFF3722	0.65	-0.4
3,764,404	-		GFF3722	0.66	-0.3
3,764,404	-		GFF3722	0.66	-1.5
3,764,404	-		GFF3722	0.66	-1.7
3,764,404	-		GFF3722	0.66	-1.0
3,764,404	-		GFF3722	0.66	-0.1
3,764,404	-		GFF3722	0.66	-0.7
3,764,404	-		GFF3722	0.66	-0.6
3,764,406	+		GFF3722	0.66	-1.6
3,764,406	+		GFF3722	0.66	+1.2
3,764,414	-		GFF3722	0.67	-1.1
3,764,414	-		GFF3722	0.67	-0.8
3,764,414	-		GFF3722	0.67	+0.1
3,764,414	-		GFF3722	0.67	-1.3
3,764,433	-		GFF3722	0.70	-0.1
3,764,444	+		GFF3722	0.71	-0.5
3,764,444	+		GFF3722	0.71	+1.7
3,764,444	+		GFF3722	0.71	-1.5
3,764,444	+		GFF3722	0.71	-0.8
3,764,452	-		GFF3722	0.72	-1.4
3,764,469	-		GFF3722	0.75	-0.3
3,764,471	-		GFF3722	0.75	-0.8
3,764,471	-		GFF3722	0.75	-0.9
3,764,471	-		GFF3722	0.75	+1.3
3,764,471	-		GFF3722	0.75	+0.4
3,764,486	-		GFF3722	0.77	-1.0
3,764,499	+		GFF3722	0.79	+0.0
3,764,507	-		GFF3722	0.80	+1.7
3,764,507	-		GFF3722	0.80	-0.3
3,764,507	-		GFF3722	0.80	-0.4
3,764,534	-		GFF3722	0.83	+0.3
3,764,577	-		GFF3722	0.89	-0.6
3,764,595	-				-0.2
3,764,599	-				+0.7
3,764,601	+				-0.7
3,764,619	+				-0.2
3,764,649	+				+0.5
3,764,649	+				-0.3
3,764,649	+				-0.5
3,764,657	-				-2.3
3,764,657	-				+0.9
3,764,657	-				+0.9
3,764,668	+				-1.9
3,764,676	-				-1.7
3,764,678	+				+0.7
3,764,697	+				-1.3
3,764,698	-				-0.6
3,764,724	-				-1.0
3,764,741	-				-2.2
3,764,766	+				-0.4
3,764,766	+				+0.7
3,764,783	-				-0.4
3,764,800	-				-0.0
3,764,807	+				-2.0
3,764,807	+				+0.1
3,764,814	-				-0.8
3,764,835	+				-2.0
3,764,835	+				+0.1
3,764,839	+				+0.3
3,764,843	-				-2.3
3,764,861	+		GFF3723	0.10	-0.9
3,764,866	+		GFF3723	0.10	+0.6
3,764,866	+		GFF3723	0.10	-1.7
3,764,869	-		GFF3723	0.11	-1.9
3,764,871	+		GFF3723	0.11	+0.4
3,764,874	-		GFF3723	0.11	-0.9
3,764,874	-		GFF3723	0.11	-0.2
3,764,910	-		GFF3723	0.13	+0.3
3,764,911	+		GFF3723	0.13	-1.6
3,764,919	-		GFF3723	0.13	+0.2
3,764,920	-		GFF3723	0.13	+0.4
3,764,925	-		GFF3723	0.14	-0.8
3,764,935	-		GFF3723	0.14	+0.5
3,764,956	-		GFF3723	0.15	-0.7
3,764,958	-		GFF3723	0.15	-1.4
3,764,990	+		GFF3723	0.17	+0.3
3,764,990	+		GFF3723	0.17	-0.2
3,764,998	-		GFF3723	0.17	-0.2
3,765,027	+		GFF3723	0.19	-1.1
3,765,035	-		GFF3723	0.19	-1.9
3,765,035	-		GFF3723	0.19	+0.6
3,765,037	+		GFF3723	0.20	+0.4
3,765,045	-		GFF3723	0.20	-0.2
3,765,058	-		GFF3723	0.21	-0.4
3,765,085	+		GFF3723	0.22	+0.5
3,765,085	+		GFF3723	0.22	-0.9
3,765,113	+		GFF3723	0.24	-1.0
3,765,121	-		GFF3723	0.24	-0.0
3,765,150	+		GFF3723	0.26	-1.4
3,765,155	+		GFF3723	0.26	-0.3
3,765,164	-		GFF3723	0.26	-0.8
3,765,199	-		GFF3723	0.28	-1.0
3,765,220	-		GFF3723	0.29	-0.1
3,765,233	-		GFF3723	0.30	-1.6
3,765,272	+		GFF3723	0.32	-0.9
3,765,272	+		GFF3723	0.32	-0.9
3,765,280	-		GFF3723	0.33	-0.7
3,765,292	+		GFF3723	0.33	+1.0
3,765,304	+		GFF3723	0.34	+0.2
3,765,305	-		GFF3723	0.34	-0.8
3,765,312	+		GFF3723	0.34	-1.5
3,765,314	+		GFF3723	0.34	-1.7
3,765,340	+		GFF3723	0.36	-0.8
3,765,348	-		GFF3723	0.36	-0.8
3,765,392	+		GFF3723	0.39	-0.8
3,765,400	-		GFF3723	0.39	-0.7
3,765,415	+		GFF3723	0.40	-0.5
3,765,426	+		GFF3723	0.40	-1.5
3,765,434	-		GFF3723	0.41	-0.1
3,765,436	+		GFF3723	0.41	-1.2
3,765,436	+		GFF3723	0.41	-0.5
3,765,436	+		GFF3723	0.41	-0.7
3,765,436	+		GFF3723	0.41	-1.4
3,765,436	+		GFF3723	0.41	-1.1
3,765,436	+		GFF3723	0.41	-2.2
3,765,436	+		GFF3723	0.41	-0.9
3,765,436	-		GFF3723	0.41	-0.7
3,765,436	-		GFF3723	0.41	-0.5
3,765,439	-		GFF3723	0.41	+0.1
3,765,444	-		GFF3723	0.41	-0.7
3,765,444	-		GFF3723	0.41	-1.2
3,765,444	-		GFF3723	0.41	-0.3
3,765,444	-		GFF3723	0.41	+0.3
3,765,444	-		GFF3723	0.41	-0.8
3,765,444	-		GFF3723	0.41	+1.2
3,765,444	-		GFF3723	0.41	+1.5
3,765,444	-		GFF3723	0.41	-0.6
3,765,444	-		GFF3723	0.41	-0.2
3,765,444	-		GFF3723	0.41	-1.5
3,765,444	-		GFF3723	0.41	-0.6
3,765,444	-		GFF3723	0.41	-1.2
3,765,444	-		GFF3723	0.41	-0.2
3,765,444	-		GFF3723	0.41	-0.1
3,765,444	-		GFF3723	0.41	-1.0
3,765,477	+		GFF3723	0.43	-0.7
3,765,501	-		GFF3723	0.44	+1.0
3,765,507	-		GFF3723	0.45	-1.9
3,765,544	+		GFF3723	0.47	-1.2
3,765,547	-		GFF3723	0.47	-1.6
3,765,552	-		GFF3723	0.47	-0.5
3,765,567	+		GFF3723	0.48	+0.1
3,765,577	-		GFF3723	0.49	-0.7
3,765,577	-		GFF3723	0.49	-1.6
3,765,605	+		GFF3723	0.50	+0.5
3,765,614	-		GFF3723	0.51	-0.3
3,765,633	+		GFF3723	0.52	-0.2
3,765,641	-		GFF3723	0.52	-0.2
3,765,641	-		GFF3723	0.52	-0.3
3,765,641	-		GFF3723	0.52	-0.8
3,765,646	+		GFF3723	0.52	+0.6
3,765,646	+		GFF3723	0.52	+0.5
3,765,655	+		GFF3723	0.53	-0.9
3,765,687	+		GFF3723	0.54	-2.0
3,765,695	-		GFF3723	0.55	+0.1
3,765,728	-		GFF3723	0.57	-0.7
3,765,730	+		GFF3723	0.57	-1.5
3,765,730	+		GFF3723	0.57	-1.8
3,765,730	+		GFF3723	0.57	-1.6
3,765,730	+		GFF3723	0.57	-0.7
3,765,738	-		GFF3723	0.57	+1.0
3,765,738	-		GFF3723	0.57	-0.8
3,765,738	-		GFF3723	0.57	-1.6
3,765,740	+		GFF3723	0.57	-1.6
3,765,740	+		GFF3723	0.57	-1.0
3,765,746	-		GFF3723	0.58	-1.4
3,765,748	-		GFF3723	0.58	+0.1
3,765,748	-		GFF3723	0.58	-0.7
3,765,759	+		GFF3723	0.58	+0.8
3,765,759	+		GFF3723	0.58	-1.4
3,765,759	+		GFF3723	0.58	-1.5
3,765,759	+		GFF3723	0.58	+1.2
3,765,759	+		GFF3723	0.58	-1.2
3,765,763	+		GFF3723	0.59	-0.7
3,765,767	-		GFF3723	0.59	-0.1
3,765,767	-		GFF3723	0.59	-1.3
3,765,767	-		GFF3723	0.59	+0.6
3,765,767	-		GFF3723	0.59	-0.8
3,765,767	-		GFF3723	0.59	-2.0
3,765,767	-		GFF3723	0.59	-0.5
3,765,767	-		GFF3723	0.59	-1.0
3,765,775	+		GFF3723	0.59	-2.0
3,765,778	-		GFF3723	0.59	-0.6
3,765,778	-		GFF3723	0.59	+0.5
3,765,783	-		GFF3723	0.60	+1.1
3,765,795	-		GFF3723	0.60	-1.1
3,765,835	-		GFF3723	0.62	-1.2
3,765,836	+		GFF3723	0.62	+0.1
3,765,860	-		GFF3723	0.64	+0.7
3,765,862	+		GFF3723	0.64	-1.0
3,765,862	-		GFF3723	0.64	+0.3
3,765,867	-		GFF3723	0.64	+1.3
3,765,875	+		GFF3723	0.65	-1.5
3,765,900	-		GFF3723	0.66	-1.0
3,765,953	+		GFF3723	0.69	-0.1
3,765,970	+		GFF3723	0.70	-1.5
3,765,970	+		GFF3723	0.70	-1.2
3,765,970	+		GFF3723	0.70	-1.7
3,765,975	+		GFF3723	0.70	+0.5
3,766,014	+		GFF3723	0.72	+0.2
3,766,047	+		GFF3723	0.74	-0.4
3,766,050	+		GFF3723	0.74	-0.0
3,766,058	-		GFF3723	0.74	-0.3
3,766,080	+		GFF3723	0.76	-1.1
3,766,080	+		GFF3723	0.76	-0.9
3,766,091	+		GFF3723	0.76	-0.1
3,766,132	+		GFF3723	0.78	-1.0
3,766,140	-		GFF3723	0.79	-0.8
3,766,140	-		GFF3723	0.79	+0.1
3,766,140	-		GFF3723	0.79	-1.6
3,766,171	+		GFF3723	0.80	-0.9
3,766,171	+		GFF3723	0.80	-0.6
3,766,171	+		GFF3723	0.80	+0.3
3,766,171	+		GFF3723	0.80	-0.0
3,766,171	+		GFF3723	0.80	-1.8
3,766,173	+		GFF3723	0.81	-0.9
3,766,173	+		GFF3723	0.81	-1.5
3,766,173	+		GFF3723	0.81	-1.5
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3,766,353	+				-0.8
3,766,355	+				-1.4
3,766,399	+				-0.6
3,766,414	+				-0.7
3,766,482	-				-0.5
3,766,493	+				-1.4
3,766,494	+				-0.8
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3,766,523	+				-1.3
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3,766,559	+				+0.7
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3,766,625	+				-1.7
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3,766,663	+				-0.8
3,766,675	+				-1.2
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3,766,697	+				-1.2
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