Strain Fitness in Sphingobium sp. HT1-2 around GFF3668

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,710,017	-		GFF3667	0.29	+0.7
3,710,078	-		GFF3667	0.34	-1.4
3,710,086	+		GFF3667	0.35	-1.8
3,710,091	+		GFF3667	0.36	-0.1
3,710,091	+		GFF3667	0.36	-1.5
3,710,104	-		GFF3667	0.37	-0.8
3,710,105	+		GFF3667	0.37	-1.3
3,710,105	+		GFF3667	0.37	-1.4
3,710,105	+		GFF3667	0.37	+0.3
3,710,120	+		GFF3667	0.38	+0.2
3,710,120	+		GFF3667	0.38	+1.0
3,710,121	-		GFF3667	0.38	-0.2
3,710,128	-		GFF3667	0.39	-0.5
3,710,141	+		GFF3667	0.40	-1.7
3,710,160	-		GFF3667	0.42	-0.3
3,710,164	+		GFF3667	0.42	-1.0
3,710,172	-		GFF3667	0.43	-1.0
3,710,174	+		GFF3667	0.43	-1.5
3,710,174	+		GFF3667	0.43	-1.8
3,710,182	-		GFF3667	0.44	+0.3
3,710,182	-		GFF3667	0.44	-0.0
3,710,193	+		GFF3667	0.45	-0.1
3,710,200	-		GFF3667	0.45	-0.6
3,710,217	+		GFF3667	0.47	-1.0
3,710,219	+		GFF3667	0.47	-0.5
3,710,225	-		GFF3667	0.47	-0.4
3,710,225	-		GFF3667	0.47	-0.3
3,710,255	+		GFF3667	0.50	-0.7
3,710,266	+		GFF3667	0.51	-0.8
3,710,275	-		GFF3667	0.52	-0.6
3,710,296	+		GFF3667	0.54	+0.1
3,710,299	-		GFF3667	0.54	-1.2
3,710,299	-		GFF3667	0.54	-0.4
3,710,318	+		GFF3667	0.56	-0.7
3,710,318	+		GFF3667	0.56	-0.7
3,710,323	+		GFF3667	0.56	-0.6
3,710,326	-		GFF3667	0.56	-0.9
3,710,334	+		GFF3667	0.57	-2.0
3,710,339	+		GFF3667	0.57	+0.6
3,710,346	+		GFF3667	0.58	+0.2
3,710,354	-		GFF3667	0.59	-1.0
3,710,362	-		GFF3667	0.60	-1.8
3,710,375	+		GFF3667	0.61	-1.1
3,710,378	-		GFF3667	0.61	-0.2
3,710,383	-		GFF3667	0.61	-1.3
3,710,405	+		GFF3667	0.63	-0.7
3,710,420	+		GFF3667	0.65	+1.9
3,710,420	+		GFF3667	0.65	-0.6
3,710,420	+		GFF3667	0.65	+0.8
3,710,443	-		GFF3667	0.67	-1.0
3,710,464	+		GFF3667	0.69	-0.7
3,710,464	+		GFF3667	0.69	-0.8
3,710,464	-		GFF3667	0.69	+0.3
3,710,497	+		GFF3667	0.71	+0.4
3,710,502	+		GFF3667	0.72	-1.6
3,710,502	+		GFF3667	0.72	+0.8
3,710,502	+		GFF3667	0.72	-0.8
3,710,505	-		GFF3667	0.72	-0.2
3,710,510	-		GFF3667	0.73	-0.3
3,710,510	-		GFF3667	0.73	+0.2
3,710,517	+		GFF3667	0.73	+0.2
3,710,520	-		GFF3667	0.73	-1.0
3,710,522	+		GFF3667	0.74	-1.6
3,710,525	-		GFF3667	0.74	-0.6
3,710,546	+		GFF3667	0.76	-0.1
3,710,583	+		GFF3667	0.79	-1.3
3,710,592	+		GFF3667	0.80	-0.1
3,710,594	+		GFF3667	0.80	+1.5
3,710,607	-		GFF3667	0.81	-0.5
3,710,610	-		GFF3667	0.81	+1.2
3,710,619	+		GFF3667	0.82	-1.6
3,710,629	+		GFF3667	0.83	-0.9
3,710,647	+		GFF3667	0.85	+1.1
3,710,654	-		GFF3667	0.85	-1.3
3,710,657	+		GFF3667	0.86	-0.7
3,710,657	+		GFF3667	0.86	+0.2
3,710,665	-		GFF3667	0.86	+1.1
3,710,673	-		GFF3667	0.87	-0.3
3,710,709	+				-2.1
3,710,716	+				-0.8
3,710,716	+				+0.3
3,710,723	-				-0.5
3,710,723	-				-0.5
3,710,728	+				+0.2
3,710,728	+				-2.7
3,710,728	+				+0.4
3,710,729	-				-1.0
3,710,734	+				-0.3
3,710,734	+				+0.7
3,710,736	-				-1.8
3,710,742	-				-1.2
3,710,742	-				-0.5
3,710,744	+				-0.2
3,710,770	+				+0.0
3,710,782	-				-2.0
3,710,796	+				-0.8
3,710,796	+				-0.8
3,710,796	+				+0.2
3,710,796	+				+0.7
3,710,796	+				-0.6
3,710,800	+				-0.6
3,710,800	+				-0.6
3,710,804	-				-0.6
3,710,804	-				+0.1
3,710,815	+				-0.7
3,710,815	+				-1.3
3,710,815	+				+0.2
3,710,816	-				-0.6
3,710,820	+				-0.3
3,710,820	+				-0.8
3,710,823	-				-0.8
3,710,823	-				+0.2
3,710,823	-				-0.4
3,710,823	-				-1.1
3,710,828	-				-0.8
3,710,828	-				-1.0
3,710,864	+				-0.8
3,710,864	+				-0.2
3,710,864	+				-0.6
3,710,876	+				-0.7
3,710,884	-				-1.1
3,710,886	+				+0.1
3,710,904	-				+0.9
3,710,910	+				+0.8
3,710,912	+				+0.4
3,710,920	-				-0.8
3,710,920	-				+0.5
3,710,920	-				-0.5
3,710,920	-				-0.6
3,710,951	-				-0.2
3,710,988	+				+1.5
3,711,002	-				+0.2
3,711,006	+				-0.7
3,711,054	+				-1.3
3,711,069	-				+1.5
3,711,104	+		GFF3668	0.11	-1.5
3,711,104	+		GFF3668	0.11	+0.4
3,711,107	+		GFF3668	0.11	-0.6
3,711,114	-		GFF3668	0.12	+0.2
3,711,117	+		GFF3668	0.12	-0.4
3,711,119	-		GFF3668	0.12	+0.4
3,711,150	+		GFF3668	0.15	-1.6
3,711,163	+		GFF3668	0.17	-0.3
3,711,165	+		GFF3668	0.17	-1.1
3,711,165	+		GFF3668	0.17	-0.2
3,711,165	-		GFF3668	0.17	-1.2
3,711,171	-		GFF3668	0.17	-1.7
3,711,173	+		GFF3668	0.18	+0.1
3,711,173	-		GFF3668	0.18	+0.2
3,711,178	+		GFF3668	0.18	-1.2
3,711,178	-		GFF3668	0.18	-0.3
3,711,216	+		GFF3668	0.22	+0.8
3,711,251	-		GFF3668	0.25	-0.9
3,711,268	-		GFF3668	0.27	+0.7
3,711,269	-		GFF3668	0.27	-0.6
3,711,282	+		GFF3668	0.28	-1.2
3,711,282	+		GFF3668	0.28	+0.7
3,711,290	-		GFF3668	0.29	+0.6
3,711,296	+		GFF3668	0.30	-0.9
3,711,303	-		GFF3668	0.31	-0.1
3,711,303	-		GFF3668	0.31	+1.6
3,711,304	-		GFF3668	0.31	+0.1
3,711,305	+		GFF3668	0.31	+1.4
3,711,306	+		GFF3668	0.31	-0.3
3,711,322	+		GFF3668	0.32	-1.2
3,711,322	+		GFF3668	0.32	-0.3
3,711,330	-		GFF3668	0.33	+2.2
3,711,342	+		GFF3668	0.34	-0.7
3,711,358	-		GFF3668	0.36	-0.9
3,711,369	+		GFF3668	0.37	+0.2
3,711,369	+		GFF3668	0.37	-0.3
3,711,369	+		GFF3668	0.37	+1.2
3,711,370	+		GFF3668	0.37	+0.4
3,711,370	+		GFF3668	0.37	-0.3
3,711,370	+		GFF3668	0.37	-0.6
3,711,377	-		GFF3668	0.38	+0.2
3,711,377	-		GFF3668	0.38	+0.4
3,711,377	-		GFF3668	0.38	+0.2
3,711,377	-		GFF3668	0.38	-0.0
3,711,378	-		GFF3668	0.38	+0.2
3,711,386	+		GFF3668	0.39	+0.4
3,711,391	-		GFF3668	0.39	-0.0
3,711,403	+		GFF3668	0.41	-0.5
3,711,403	+		GFF3668	0.41	-1.4
3,711,408	+		GFF3668	0.41	-0.8
3,711,411	-		GFF3668	0.41	-0.2
3,711,416	-		GFF3668	0.42	-1.1
3,711,434	+		GFF3668	0.44	-0.3
3,711,440	+		GFF3668	0.44	+2.1
3,711,456	-		GFF3668	0.46	+0.7
3,711,481	+		GFF3668	0.48	+1.2
3,711,489	-		GFF3668	0.49	-0.8
3,711,490	+		GFF3668	0.49	-0.2
3,711,503	-		GFF3668	0.51	-1.1
3,711,505	+		GFF3668	0.51	-1.1
3,711,505	+		GFF3668	0.51	-0.8
3,711,505	+		GFF3668	0.51	+0.4
3,711,508	-		GFF3668	0.51	-1.2
3,711,513	-		GFF3668	0.52	+0.1
3,711,513	-		GFF3668	0.52	+0.2
3,711,513	-		GFF3668	0.52	-0.2
3,711,513	-		GFF3668	0.52	-1.6
3,711,530	-		GFF3668	0.53	-0.1
3,711,547	+		GFF3668	0.55	-0.8
3,711,549	+		GFF3668	0.55	+0.7
3,711,556	+		GFF3668	0.56	-0.9
3,711,556	+		GFF3668	0.56	-1.7
3,711,556	+		GFF3668	0.56	-1.5
3,711,562	-		GFF3668	0.56	-0.2
3,711,580	+		GFF3668	0.58	-1.7
3,711,610	+		GFF3668	0.61	-0.7
3,711,614	+		GFF3668	0.62	+1.2
3,711,616	+		GFF3668	0.62	-0.8
3,711,616	+		GFF3668	0.62	+0.5
3,711,616	+		GFF3668	0.62	-0.3
3,711,618	-		GFF3668	0.62	-1.0
3,711,623	-		GFF3668	0.63	+0.2
3,711,624	-		GFF3668	0.63	+0.8
3,711,633	-		GFF3668	0.64	-1.5
3,711,646	-		GFF3668	0.65	+0.3
3,711,646	-		GFF3668	0.65	-1.2
3,711,662	+		GFF3668	0.66	-0.8
3,711,665	-		GFF3668	0.67	-0.6
3,711,670	-		GFF3668	0.67	+0.9
3,711,693	-		GFF3668	0.70	-1.9
3,711,762	+		GFF3668	0.76	+0.8
3,711,801	+		GFF3668	0.80	-0.0
3,711,816	+		GFF3668	0.82	+0.4
3,711,816	+		GFF3668	0.82	+0.7
3,711,819	-		GFF3668	0.82	+0.7
3,711,819	-		GFF3668	0.82	-0.3
3,711,821	+		GFF3668	0.82	+0.1
3,711,824	-		GFF3668	0.83	+1.9
3,711,824	-		GFF3668	0.83	-0.5
3,711,824	-		GFF3668	0.83	+0.4
3,711,826	+		GFF3668	0.83	-0.7
3,711,839	-		GFF3668	0.84	-0.1
3,711,841	+		GFF3668	0.84	-0.2
3,711,857	-		GFF3668	0.86	-1.5
3,711,864	+		GFF3668	0.87	-0.8
3,711,872	-		GFF3668	0.87	-0.0
3,711,889	+		GFF3668	0.89	-0.8
3,711,912	+				-0.0
3,711,915	-				-0.3
3,711,925	+				+0.2
3,711,938	+				+0.8
3,711,944	+				+0.1
3,711,944	+				-0.9
3,711,961	+				+0.5
3,711,971	+				+0.5
3,711,983	+				+0.2
3,711,990	+				-0.1
3,711,990	+				-1.6
3,711,991	-				+0.1
3,711,998	-				+0.5
3,711,998	-				+0.2
3,711,998	-				-0.6
3,712,009	+				-0.8
3,712,085	-				-0.2
3,712,096	-				+0.1
3,712,097	-				-0.8
3,712,131	+				-0.3
3,712,157	+				+0.5
3,712,167	-				-0.7
3,712,204	+				-0.3
3,712,204	+				-0.5
3,712,224	-				-0.5
3,712,229	-				-0.8
3,712,354	+				-0.8
3,712,359	-				-0.8
3,712,362	+				-0.8
3,712,362	+				-0.5
3,712,369	-				-0.8
3,712,370	-				-0.3
3,712,384	+				-1.2
3,712,392	-				+1.2
3,712,392	-				-0.1
3,712,435	+		GFF3669	0.14	-0.3
3,712,443	-		GFF3669	0.15	-0.2
3,712,451	+		GFF3669	0.15	-1.3
3,712,463	+		GFF3669	0.17	+0.5
3,712,471	-		GFF3669	0.17	+0.3
3,712,526	-		GFF3669	0.23	-0.3
3,712,534	+		GFF3669	0.24	-0.1
3,712,537	-		GFF3669	0.24	-1.1
3,712,544	-		GFF3669	0.25	-0.5
3,712,566	-		GFF3669	0.27	-0.2
3,712,594	+		GFF3669	0.30	+0.5
3,712,599	+		GFF3669	0.30	+0.2
3,712,602	-		GFF3669	0.30	-0.6
3,712,614	+		GFF3669	0.32	-0.5
3,712,718	+		GFF3669	0.42	+0.3
3,712,726	-		GFF3669	0.43	-0.5
3,712,726	-		GFF3669	0.43	-0.5
3,712,740	+		GFF3669	0.44	+0.7
3,712,742	+		GFF3669	0.44	+0.7
3,712,791	+		GFF3669	0.49	-0.5
3,712,846	-		GFF3669	0.55	-0.5
3,712,963	-		GFF3669	0.66	-0.8