Strain Fitness in Sphingobium sp. HT1-2 around GFF3660

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,702,956	-		GFF3659	0.27	-0.7
3,702,967	-		GFF3659	0.27	-0.6
3,702,981	+		GFF3659	0.29	+0.5
3,702,984	-		GFF3659	0.29	-0.2
3,702,986	-		GFF3659	0.29	-1.6
3,702,991	+		GFF3659	0.29	-0.3
3,702,991	+		GFF3659	0.29	-1.3
3,702,991	+		GFF3659	0.29	-1.3
3,702,991	+		GFF3659	0.29	-1.2
3,702,991	+		GFF3659	0.29	-0.2
3,702,991	+		GFF3659	0.29	-0.3
3,702,991	+		GFF3659	0.29	-0.5
3,702,999	-		GFF3659	0.30	-1.9
3,702,999	-		GFF3659	0.30	-1.1
3,702,999	-		GFF3659	0.30	+1.2
3,702,999	-		GFF3659	0.30	-1.8
3,702,999	-		GFF3659	0.30	+0.9
3,702,999	-		GFF3659	0.30	-0.8
3,702,999	-		GFF3659	0.30	-0.3
3,702,999	-		GFF3659	0.30	+0.2
3,702,999	-		GFF3659	0.30	-1.3
3,702,999	-		GFF3659	0.30	-1.0
3,703,004	-		GFF3659	0.31	+0.3
3,703,009	+		GFF3659	0.31	+0.4
3,703,032	-		GFF3659	0.33	-0.7
3,703,037	+		GFF3659	0.33	+0.5
3,703,047	+		GFF3659	0.34	+0.7
3,703,047	+		GFF3659	0.34	+0.9
3,703,055	-		GFF3659	0.35	-0.9
3,703,055	-		GFF3659	0.35	+0.5
3,703,060	+		GFF3659	0.35	-1.0
3,703,060	+		GFF3659	0.35	+0.7
3,703,068	-		GFF3659	0.36	+0.7
3,703,068	-		GFF3659	0.36	-0.6
3,703,093	+		GFF3659	0.38	+0.0
3,703,097	+		GFF3659	0.38	-0.5
3,703,097	+		GFF3659	0.38	-0.5
3,703,114	+		GFF3659	0.40	-0.8
3,703,126	+		GFF3659	0.41	+0.7
3,703,126	+		GFF3659	0.41	+0.4
3,703,127	-		GFF3659	0.41	-0.2
3,703,134	-		GFF3659	0.41	-0.6
3,703,134	-		GFF3659	0.41	+0.8
3,703,144	+		GFF3659	0.42	-0.2
3,703,147	-		GFF3659	0.43	-0.6
3,703,148	+		GFF3659	0.43	-0.6
3,703,153	+		GFF3659	0.43	-1.5
3,703,153	+		GFF3659	0.43	+0.5
3,703,159	+		GFF3659	0.44	+0.7
3,703,161	-		GFF3659	0.44	+0.4
3,703,167	-		GFF3659	0.44	-1.0
3,703,213	-		GFF3659	0.48	+0.5
3,703,240	-		GFF3659	0.50	-0.5
3,703,244	+		GFF3659	0.51	-0.7
3,703,257	+		GFF3659	0.52	-0.2
3,703,260	-		GFF3659	0.52	+0.5
3,703,265	-		GFF3659	0.52	-1.6
3,703,265	-		GFF3659	0.52	-0.2
3,703,271	+		GFF3659	0.53	-0.9
3,703,271	+		GFF3659	0.53	+1.3
3,703,279	+		GFF3659	0.54	+0.7
3,703,279	+		GFF3659	0.54	-0.5
3,703,279	+		GFF3659	0.54	-1.2
3,703,279	+		GFF3659	0.54	+1.7
3,703,279	-		GFF3659	0.54	-1.3
3,703,287	-		GFF3659	0.54	-0.7
3,703,287	-		GFF3659	0.54	-0.1
3,703,287	-		GFF3659	0.54	-2.2
3,703,287	-		GFF3659	0.54	+0.3
3,703,287	-		GFF3659	0.54	-1.9
3,703,287	-		GFF3659	0.54	-1.5
3,703,322	+		GFF3659	0.57	-0.8
3,703,322	+		GFF3659	0.57	-0.6
3,703,322	+		GFF3659	0.57	+1.3
3,703,322	+		GFF3659	0.57	+1.3
3,703,322	+		GFF3659	0.57	-0.5
3,703,322	+		GFF3659	0.57	-0.2
3,703,322	+		GFF3659	0.57	-1.4
3,703,322	+		GFF3659	0.57	-0.0
3,703,322	+		GFF3659	0.57	-0.1
3,703,330	-		GFF3659	0.58	-0.2
3,703,330	-		GFF3659	0.58	-0.6
3,703,330	-		GFF3659	0.58	-0.8
3,703,330	-		GFF3659	0.58	-1.3
3,703,330	-		GFF3659	0.58	+0.9
3,703,330	-		GFF3659	0.58	-1.6
3,703,330	-		GFF3659	0.58	-0.3
3,703,342	+		GFF3659	0.59	+0.3
3,703,350	-		GFF3659	0.60	+0.4
3,703,350	-		GFF3659	0.60	-1.2
3,703,350	-		GFF3659	0.60	+0.3
3,703,357	+		GFF3659	0.60	-0.5
3,703,360	+		GFF3659	0.60	+0.8
3,703,365	-		GFF3659	0.61	-1.3
3,703,370	+		GFF3659	0.61	-1.1
3,703,370	+		GFF3659	0.61	-1.0
3,703,370	+		GFF3659	0.61	-0.0
3,703,370	+		GFF3659	0.61	+1.8
3,703,371	+		GFF3659	0.61	-0.9
3,703,378	-		GFF3659	0.62	+0.4
3,703,378	-		GFF3659	0.62	-0.3
3,703,378	-		GFF3659	0.62	+0.4
3,703,378	-		GFF3659	0.62	-1.9
3,703,380	-		GFF3659	0.62	-2.0
3,703,384	-		GFF3659	0.62	-0.3
3,703,418	+		GFF3659	0.65	-0.3
3,703,470	+		GFF3659	0.70	-0.2
3,703,478	-		GFF3659	0.70	-0.3
3,703,510	+		GFF3659	0.73	-2.4
3,703,511	+		GFF3659	0.73	-0.5
3,703,518	-		GFF3659	0.74	-0.6
3,703,518	-		GFF3659	0.74	-0.3
3,703,519	-		GFF3659	0.74	-0.6
3,703,601	+		GFF3659	0.81	+0.7
3,703,615	-		GFF3659	0.82	-1.2
3,703,638	-		GFF3659	0.84	+0.3
3,703,638	-		GFF3659	0.84	-1.7
3,703,684	-		GFF3659	0.88	+1.3
3,703,719	-				+0.7
3,703,719	-				+0.7
3,703,719	-				-2.2
3,703,719	-				-1.8
3,703,720	+				-0.3
3,703,720	+				-2.1
3,703,720	+				-0.7
3,703,720	+				-1.2
3,703,720	+				-0.6
3,703,720	+				+1.7
3,703,720	+				-0.3
3,703,720	+				-0.2
3,703,720	+				-0.5
3,703,720	+				-2.0
3,703,720	+				+0.8
3,703,720	+				-0.6
3,703,720	+				-0.8
3,703,720	+				-0.6
3,703,720	+				-1.2
3,703,720	+				-1.2
3,703,728	-				-1.4
3,703,728	-				-1.2
3,703,728	-				-0.8
3,703,728	-				-1.9
3,703,728	-				-1.1
3,703,728	-				+0.3
3,703,728	-				-0.3
3,703,728	-				-1.4
3,703,728	-				-0.8
3,703,728	-				-0.9
3,703,732	+				-2.5
3,703,732	+				-0.8
3,703,732	+				-0.0
3,703,737	+				+1.2
3,703,740	-				-0.4
3,703,745	-				-0.5
3,703,745	-				-1.2
3,703,769	+				-1.9
3,703,784	+				-0.0
3,703,784	+				-0.6
3,703,784	+				-1.7
3,703,789	+				+0.1
3,703,803	+				-0.9
3,703,803	+				-0.8
3,703,803	+				-0.2
3,703,803	+				-0.7
3,703,803	+				-0.2
3,703,803	+				+0.1
3,703,803	+				-0.2
3,703,811	-				-0.2
3,703,811	-				+1.4
3,703,811	-				-0.4
3,703,811	-				+0.1
3,703,811	-				+0.7
3,703,811	-				-0.1
3,703,817	-				-1.3
3,703,837	-				-0.3
3,703,849	+				-0.3
3,703,857	-				+0.7
3,703,864	+				-0.5
3,703,872	+				+1.3
3,704,332	+				+1.1
3,704,332	+				-1.2
3,704,332	+				-1.0
3,704,332	+				-0.1
3,704,332	+				-1.2
3,704,332	+				-1.5
3,704,333	-				-0.6
3,704,340	-				+0.2
3,704,340	-				-1.7
3,704,340	-				-0.5
3,704,352	+				-0.2
3,704,387	-				+1.1
3,704,430	+				+1.2
3,704,430	+				+1.4
3,704,435	-				-0.7
3,704,445	-				-0.2
3,704,452	-				-0.3
3,704,466	+				+1.2
3,704,476	+				+0.9
3,704,476	+				-0.2
3,704,476	+				-2.3
3,704,476	+				-2.0
3,704,476	+				-0.1
3,704,476	+				+1.5
3,704,476	+				-1.5
3,704,476	+				-0.3
3,704,476	+				-0.7
3,704,476	+				-0.1
3,704,476	+				-0.8
3,704,481	+				+1.4
3,704,484	-				-1.1
3,704,484	-				-0.8
3,704,484	-				-0.2
3,704,484	-				-1.0
3,704,484	-				+0.4
3,704,484	-				+0.5
3,704,484	-				-0.8
3,704,484	-				+1.1
3,704,484	-				+1.5
3,704,502	-		GFF3661	0.10	-1.2
3,704,517	-		GFF3661	0.12	+0.6
3,704,540	+		GFF3661	0.14	-0.6
3,704,540	+		GFF3661	0.14	+0.7
3,704,545	+		GFF3661	0.14	-0.5
3,704,548	-		GFF3661	0.14	+0.2
3,704,548	-		GFF3661	0.14	+0.1
3,704,548	-		GFF3661	0.14	-2.4
3,704,599	+		GFF3661	0.19	-0.0
3,704,612	+		GFF3661	0.20	-1.1
3,704,621	-		GFF3661	0.21	-1.3
3,704,623	+		GFF3661	0.21	+0.1
3,704,624	+		GFF3661	0.22	-2.0
3,704,631	-		GFF3661	0.22	-1.2
3,704,631	-		GFF3661	0.22	-0.3
3,704,661	+		GFF3661	0.25	-0.3
3,704,661	+		GFF3661	0.25	+1.5
3,704,661	+		GFF3661	0.25	-0.6
3,704,669	-		GFF3661	0.26	-2.3
3,704,683	+		GFF3661	0.27	-0.5
3,704,683	+		GFF3661	0.27	+0.7
3,704,683	+		GFF3661	0.27	+0.1
3,704,683	+		GFF3661	0.27	-0.9
3,704,686	-		GFF3661	0.27	+1.9
3,704,686	-		GFF3661	0.27	-0.5
3,704,691	-		GFF3661	0.28	-0.2
3,704,691	-		GFF3661	0.28	-0.7
3,704,705	+		GFF3661	0.29	+1.0
3,704,707	+		GFF3661	0.29	-1.0
3,704,715	+		GFF3661	0.30	-0.5
3,704,715	+		GFF3661	0.30	-1.0
3,704,715	+		GFF3661	0.30	-0.5
3,704,720	+		GFF3661	0.30	+0.7
3,704,721	-		GFF3661	0.31	-1.2
3,704,738	+		GFF3661	0.32	-0.5
3,704,740	+		GFF3661	0.32	+1.8
3,704,745	+		GFF3661	0.33	-1.5
3,704,747	+		GFF3661	0.33	-0.6
3,704,748	-		GFF3661	0.33	+1.1
3,704,748	-		GFF3661	0.33	-0.3
3,704,748	-		GFF3661	0.33	-1.3
3,704,748	-		GFF3661	0.33	-0.5
3,704,748	-		GFF3661	0.33	-1.2
3,704,748	-		GFF3661	0.33	-1.0
3,704,748	-		GFF3661	0.33	+0.2
3,704,753	-		GFF3661	0.34	-1.1
3,704,755	-		GFF3661	0.34	-1.3
3,704,776	+		GFF3661	0.36	-0.3
3,704,781	+		GFF3661	0.36	+0.2
3,704,784	-		GFF3661	0.36	-0.6
3,704,784	-		GFF3661	0.36	-0.2
3,704,784	-		GFF3661	0.36	-1.2
3,704,789	-		GFF3661	0.37	-0.0
3,704,804	+		GFF3661	0.38	-0.6
3,704,806	+		GFF3661	0.38	-0.5
3,704,808	+		GFF3661	0.39	-0.2
3,704,811	+		GFF3661	0.39	-1.7
3,704,814	-		GFF3661	0.39	-0.2
3,704,819	-		GFF3661	0.40	-1.1
3,704,819	-		GFF3661	0.40	+0.4
3,704,852	+		GFF3661	0.43	+0.3
3,704,852	+		GFF3661	0.43	-1.0
3,704,854	+		GFF3661	0.43	-1.3
3,704,854	+		GFF3661	0.43	-0.7
3,704,854	+		GFF3661	0.43	-0.8
3,704,860	-		GFF3661	0.43	-0.8
3,704,860	-		GFF3661	0.43	-0.7
3,704,860	-		GFF3661	0.43	-0.9
3,704,862	-		GFF3661	0.44	-0.3
3,704,872	-		GFF3661	0.45	-1.0
3,704,910	+		GFF3661	0.48	+1.2
3,704,913	-		GFF3661	0.48	-1.0
3,704,923	+		GFF3661	0.49	-1.0
3,704,937	+		GFF3661	0.51	+1.0
3,704,940	-		GFF3661	0.51	-0.3
3,704,941	-		GFF3661	0.51	-1.7
3,704,945	-		GFF3661	0.51	-0.5
3,704,971	-		GFF3661	0.54	-0.2
3,704,984	+		GFF3661	0.55	-0.3
3,704,984	+		GFF3661	0.55	-0.9
3,704,984	-		GFF3661	0.55	-0.3
3,704,989	+		GFF3661	0.55	+0.1
3,704,992	-		GFF3661	0.56	+0.9
3,704,992	-		GFF3661	0.56	-1.0
3,704,997	-		GFF3661	0.56	-1.1
3,704,997	-		GFF3661	0.56	-0.6
3,704,998	+		GFF3661	0.56	-1.6
3,704,998	+		GFF3661	0.56	-0.6
3,704,998	+		GFF3661	0.56	-0.9
3,705,006	-		GFF3661	0.57	-0.8
3,705,006	-		GFF3661	0.57	+0.2
3,705,006	-		GFF3661	0.57	-0.2
3,705,011	-		GFF3661	0.57	-0.9
3,705,014	+		GFF3661	0.58	+0.4
3,705,014	+		GFF3661	0.58	-0.5
3,705,014	+		GFF3661	0.58	+0.2
3,705,014	+		GFF3661	0.58	-0.6
3,705,022	-		GFF3661	0.58	-1.4
3,705,022	-		GFF3661	0.58	+0.5
3,705,022	-		GFF3661	0.58	-1.3
3,705,035	+		GFF3661	0.60	-0.2
3,705,036	-		GFF3661	0.60	+0.9
3,705,158	+		GFF3661	0.71	-0.0
3,705,172	-		GFF3661	0.72	-1.6
3,705,187	-		GFF3661	0.74	-0.3
3,705,194	+		GFF3661	0.74	-1.8
3,705,194	+		GFF3661	0.74	-0.5
3,705,194	+		GFF3661	0.74	+0.4
3,705,194	+		GFF3661	0.74	-0.8
3,705,194	+		GFF3661	0.74	+1.5
3,705,194	+		GFF3661	0.74	-0.2
3,705,194	+		GFF3661	0.74	-0.3
3,705,194	+		GFF3661	0.74	-1.0
3,705,194	+		GFF3661	0.74	-0.5
3,705,194	+		GFF3661	0.74	+0.2
3,705,202	-		GFF3661	0.75	-0.2
3,705,202	-		GFF3661	0.75	+0.7
3,705,202	-		GFF3661	0.75	-0.5
3,705,202	-		GFF3661	0.75	+0.4
3,705,209	+		GFF3661	0.76	-1.9
3,705,212	-		GFF3661	0.76	-0.7
3,705,222	-		GFF3661	0.77	+0.4
3,705,249	+		GFF3661	0.80	-1.3
3,705,251	+		GFF3661	0.80	-1.3
3,705,256	-		GFF3661	0.80	+0.4
3,705,266	+		GFF3661	0.81	+1.0
3,705,271	+		GFF3661	0.82	-0.1
3,705,279	+		GFF3661	0.82	-0.5
3,705,279	-		GFF3661	0.82	-0.7
3,705,286	-		GFF3661	0.83	+0.5
3,705,288	-		GFF3661	0.83	-0.5