Strain Fitness in Sphingobium sp. HT1-2 around GFF3602

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,646,626	+				-0.7
3,646,641	-				-1.2
3,646,643	+				-0.2
3,646,651	-				-0.2
3,646,695	+				-0.5
3,646,695	+				-0.9
3,646,703	-				-0.8
3,646,703	-				-0.8
3,646,703	-				+1.0
3,646,703	-				-1.5
3,646,703	-				-0.8
3,646,710	+				-0.8
3,646,728	-				-0.7
3,646,731	+				+0.5
3,646,739	-		GFF3601	0.11	-0.8
3,646,780	+		GFF3601	0.23	-1.0
3,646,792	-		GFF3601	0.26	-0.5
3,646,793	+		GFF3601	0.27	-2.3
3,646,799	+		GFF3601	0.28	+1.1
3,646,822	-		GFF3601	0.35	+0.2
3,646,830	-		GFF3601	0.37	-0.9
3,646,870	+		GFF3601	0.48	+0.2
3,646,902	+		GFF3601	0.57	-0.4
3,646,905	-		GFF3601	0.58	+0.8
3,646,910	-		GFF3601	0.59	+1.2
3,646,914	-		GFF3601	0.61	-1.6
3,646,915	-		GFF3601	0.61	-0.6
3,646,920	-		GFF3601	0.62	+0.4
3,646,933	+		GFF3601	0.66	-0.3
3,646,978	+		GFF3601	0.78	-0.2
3,646,987	+		GFF3601	0.81	-0.8
3,646,991	+		GFF3601	0.82	+0.7
3,646,991	+		GFF3601	0.82	-0.8
3,646,999	-		GFF3601	0.84	-0.2
3,647,004	+		GFF3601	0.86	-0.8
3,647,012	-		GFF3601	0.88	-1.5
3,647,020	-				-0.5
3,647,027	+				-0.2
3,647,027	+				-0.3
3,647,032	+				+0.2
3,647,035	-				-0.8
3,647,035	-				+2.1
3,647,036	+				-0.5
3,647,037	+				-2.4
3,647,056	+				-1.6
3,647,058	-				+0.8
3,647,059	-				+0.1
3,647,059	-				+0.4
3,647,064	-				+0.1
3,647,071	-				+0.4
3,647,073	-				-1.1
3,647,122	+				+0.4
3,647,122	+				-2.3
3,647,130	-				-1.9
3,647,142	+		GFF3602	0.11	-0.5
3,647,149	+		GFF3602	0.11	-1.0
3,647,152	-		GFF3602	0.12	-1.1
3,647,152	-		GFF3602	0.12	-0.9
3,647,154	+		GFF3602	0.12	-1.4
3,647,154	+		GFF3602	0.12	+0.4
3,647,154	+		GFF3602	0.12	-1.9
3,647,154	+		GFF3602	0.12	-0.2
3,647,154	+		GFF3602	0.12	-0.1
3,647,154	+		GFF3602	0.12	-0.2
3,647,154	+		GFF3602	0.12	+2.0
3,647,154	+		GFF3602	0.12	-1.2
3,647,154	+		GFF3602	0.12	-1.8
3,647,154	+		GFF3602	0.12	-0.8
3,647,157	-		GFF3602	0.12	-0.0
3,647,162	-		GFF3602	0.13	-1.0
3,647,162	-		GFF3602	0.13	-0.2
3,647,162	-		GFF3602	0.13	-1.4
3,647,162	-		GFF3602	0.13	-1.3
3,647,162	-		GFF3602	0.13	-0.9
3,647,180	+		GFF3602	0.14	-1.2
3,647,192	-		GFF3602	0.15	-1.3
3,647,199	+		GFF3602	0.16	+0.7
3,647,199	+		GFF3602	0.16	-2.3
3,647,207	-		GFF3602	0.17	-0.8
3,647,207	-		GFF3602	0.17	+0.5
3,647,226	-		GFF3602	0.19	-0.6
3,647,229	+		GFF3602	0.19	-0.7
3,647,229	+		GFF3602	0.19	-0.7
3,647,229	+		GFF3602	0.19	+0.5
3,647,229	+		GFF3602	0.19	-1.0
3,647,237	-		GFF3602	0.20	-1.7
3,647,237	-		GFF3602	0.20	-0.1
3,647,237	-		GFF3602	0.20	-0.3
3,647,237	-		GFF3602	0.20	-1.5
3,647,237	-		GFF3602	0.20	-1.4
3,647,237	-		GFF3602	0.20	+1.4
3,647,324	+		GFF3602	0.28	-1.7
3,647,324	+		GFF3602	0.28	-0.3
3,647,329	+		GFF3602	0.28	-0.6
3,647,332	-		GFF3602	0.28	-0.2
3,647,332	-		GFF3602	0.28	-1.0
3,647,339	+		GFF3602	0.29	-2.2
3,647,339	+		GFF3602	0.29	+1.0
3,647,339	+		GFF3602	0.29	-0.1
3,647,349	+		GFF3602	0.30	-0.8
3,647,349	+		GFF3602	0.30	-0.4
3,647,349	+		GFF3602	0.30	+0.6
3,647,349	-		GFF3602	0.30	+0.5
3,647,357	-		GFF3602	0.31	-0.5
3,647,419	-		GFF3602	0.36	+0.3
3,647,419	-		GFF3602	0.36	-1.0
3,647,426	+		GFF3602	0.37	+0.6
3,647,426	+		GFF3602	0.37	+1.4
3,647,426	+		GFF3602	0.37	-1.2
3,647,434	-		GFF3602	0.38	-1.1
3,647,439	+		GFF3602	0.38	+0.4
3,647,439	+		GFF3602	0.38	+1.0
3,647,443	+		GFF3602	0.39	-1.5
3,647,447	-		GFF3602	0.39	+1.2
3,647,452	-		GFF3602	0.40	-0.7
3,647,453	+		GFF3602	0.40	-0.7
3,647,461	-		GFF3602	0.40	+0.4
3,647,490	-		GFF3602	0.43	+0.3
3,647,527	+		GFF3602	0.47	-0.6
3,647,586	-		GFF3602	0.52	+0.7
3,647,592	-		GFF3602	0.53	-0.4
3,647,599	+		GFF3602	0.53	+0.3
3,647,663	-		GFF3602	0.59	-0.3
3,647,666	+		GFF3602	0.59	-1.6
3,647,699	+		GFF3602	0.62	-0.8
3,647,707	-		GFF3602	0.63	-0.3
3,647,716	-		GFF3602	0.64	+1.4
3,647,716	-		GFF3602	0.64	+0.9
3,647,778	+		GFF3602	0.70	-0.1
3,647,782	+		GFF3602	0.70	+0.4
3,647,782	+		GFF3602	0.70	+0.8
3,647,791	+		GFF3602	0.71	+1.7
3,647,829	+		GFF3602	0.75	-0.8
3,647,836	+		GFF3602	0.75	-0.3
3,647,897	+		GFF3602	0.81	-0.0
3,647,898	+		GFF3602	0.81	-0.5
3,647,898	+		GFF3602	0.81	-2.1
3,647,906	-		GFF3602	0.82	-0.8
3,647,922	+		GFF3602	0.83	-2.0
3,647,930	-		GFF3602	0.84	-0.5
3,647,930	-		GFF3602	0.84	-0.4
3,647,948	-		GFF3602	0.86	-0.8
3,647,966	+		GFF3602	0.87	-0.2
3,647,966	+		GFF3602	0.87	-1.8
3,647,966	+		GFF3602	0.87	-1.4
3,647,974	-		GFF3602	0.88	-0.5
3,647,974	-		GFF3602	0.88	-0.0
3,647,974	-		GFF3602	0.88	-0.0
3,647,974	-		GFF3602	0.88	-0.8
3,647,974	-		GFF3602	0.88	-1.0
3,647,985	+		GFF3602	0.89	+0.1
3,647,989	-		GFF3602	0.89	-0.9
3,648,004	+				-0.8
3,648,007	+				-0.5
3,648,010	-				-0.2
3,648,010	-				-1.2
3,648,038	+				-0.4
3,648,046	-				-0.2
3,648,046	-				-0.5
3,648,081	+				+0.8
3,648,082	+				-0.3
3,648,087	+				-0.4
3,648,087	+				+1.4
3,648,089	-				-1.1
3,648,091	+				-1.7
3,648,095	-				-1.2
3,648,095	-				+0.4
3,648,095	-				+0.2
3,648,095	-				-0.3
3,648,095	-				-0.9
3,648,098	+				+0.7
3,648,099	-				-1.4
3,648,103	+				-0.3
3,648,103	+				-1.4
3,648,103	+				-0.0
3,648,164	+				+0.7
3,648,173	+				-0.5
3,648,173	+				-0.2
3,648,173	+				-0.3
3,648,173	+				-0.6
3,648,173	+				-2.3
3,648,173	+				-0.7
3,648,173	+				-0.8
3,648,173	+				-1.0
3,648,173	+				-0.2
3,648,173	-				-0.8
3,648,181	-				+1.2
3,648,181	-				-0.9
3,648,181	-				-0.3
3,648,181	-				-0.8
3,648,181	-				-1.1
3,648,181	-				+0.8
3,648,181	-				-0.6
3,648,181	-				-0.2
3,648,181	-				-0.9
3,648,181	-				-0.6
3,648,181	-				+0.2
3,648,183	+				+0.8
3,648,188	-				-0.3
3,648,191	+				+0.1
3,648,191	-				-0.2
3,648,191	-				-0.9
3,648,192	-				-0.2
3,648,198	+				-0.6
3,648,203	+				-0.8
3,648,203	+				+1.2
3,648,203	+				-0.8
3,648,203	+				+1.0
3,648,203	+				-1.6
3,648,206	-				-1.0
3,648,206	-				-1.6
3,648,211	-				-0.2
3,648,211	-				-1.0
3,648,212	-				-0.9
3,648,218	+				-0.1
3,648,226	-				-1.4
3,648,235	-				-1.3
3,648,281	+				+0.5
3,648,281	+				-0.9
3,648,281	+				-1.6
3,648,281	+				+0.5
3,648,289	-				-2.1
3,648,289	-				-1.9
3,648,289	-				-0.6
3,648,289	-				-1.6
3,648,289	-				-0.4
3,648,289	-				-0.4
3,648,296	-				-0.3
3,648,296	-				-0.3
3,648,298	+				-1.0
3,648,305	+				-2.0
3,648,308	-				-2.1
3,648,317	+				-1.8
3,648,325	-				-0.7
3,648,370	+		GFF3603	0.22	-2.3
3,648,375	+		GFF3603	0.24	-0.3
3,648,378	-		GFF3603	0.25	-2.2
3,648,413	+		GFF3603	0.35	-0.2
3,648,430	+		GFF3603	0.40	-0.0
3,648,431	-		GFF3603	0.41	-1.2
3,648,453	-		GFF3603	0.47	-2.3
3,648,474	-		GFF3603	0.53	-0.1
3,648,476	+		GFF3603	0.54	+0.7
3,648,480	+		GFF3603	0.55	-0.8
3,648,480	+		GFF3603	0.55	-1.1
3,648,488	-		GFF3603	0.58	-0.2
3,648,502	+		GFF3603	0.62	-2.2
3,648,504	+		GFF3603	0.62	-0.6
3,648,505	-		GFF3603	0.63	-0.8
3,648,519	+		GFF3603	0.67	+0.3
3,648,546	+		GFF3603	0.75	+0.1
3,648,588	+		GFF3603	0.88	-1.2
3,648,588	+		GFF3603	0.88	+0.8
3,648,592	+		GFF3603	0.89	+0.8
3,648,593	+		GFF3603	0.89	+1.2
3,648,596	-				-1.7
3,648,601	-				-2.2
3,648,601	-				-1.9
3,648,617	+				-2.4
3,648,623	+				-1.2
3,648,623	+				-1.4
3,648,623	+				+0.1
3,648,623	+				-0.3
3,648,630	-				-1.4
3,648,630	-				-1.2
3,648,631	+				-1.0
3,648,631	+				-0.8
3,648,631	+				-1.4
3,648,637	-				+0.5
3,648,640	+				-0.6
3,648,646	-				-0.2
3,648,649	-				+0.5
3,648,685	-				-0.8
3,648,687	+				-0.0
3,648,687	+				-0.7
3,648,687	+				-0.5
3,648,687	+				-0.2
3,648,687	+				-0.3
3,648,687	+				-0.5
3,648,695	-				-0.2
3,648,695	-				+0.0
3,648,695	-				-1.1
3,648,700	-				-0.3
3,648,724	+				-0.2
3,648,724	+				-0.6
3,648,724	+				+0.2
3,648,724	+				+0.7
3,648,724	+				-0.0
3,648,732	-				+0.8
3,648,732	-				+1.0
3,648,732	-				+1.0
3,648,756	-				-0.2
3,648,761	-				-0.7
3,648,773	+				-0.5
3,648,781	-				-1.6
3,648,819	-				-0.9
3,648,824	-				-0.5
3,648,824	-				-1.7
3,648,825	+				-0.6
3,648,833	-				+0.7
3,648,841	+				-0.2
3,648,841	+				-1.5
3,648,849	-				-0.8
3,648,852	+				+0.9
3,648,860	-		GFF3604	0.10	-0.0
3,648,867	+		GFF3604	0.11	-0.5
3,648,912	-		GFF3604	0.13	+1.1
3,648,938	+		GFF3604	0.14	-0.6
3,648,938	+		GFF3604	0.14	+1.2
3,648,938	+		GFF3604	0.14	-0.2
3,648,946	-		GFF3604	0.14	-0.9
3,648,956	-		GFF3604	0.15	+0.2
3,648,971	-		GFF3604	0.16	-1.5
3,648,996	+		GFF3604	0.17	-0.5
3,648,996	+		GFF3604	0.17	-1.2
3,649,014	+		GFF3604	0.18	-1.2
3,649,055	-		GFF3604	0.20	-0.7
3,649,062	+		GFF3604	0.20	-0.6
3,649,062	+		GFF3604	0.20	+1.2
3,649,062	+		GFF3604	0.20	+0.1
3,649,077	+		GFF3604	0.21	+0.4
3,649,085	-		GFF3604	0.21	-0.8
3,649,096	-		GFF3604	0.22	-0.4
3,649,096	-		GFF3604	0.22	-0.8