Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF359 and GFF360 overlap by 4 nucleotides GFF360 and GFF361 are separated by 102 nucleotides GFF361 and GFF362 are separated by 9 nucleotides
GFF359 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 350,321 to 351,673
GFF359
GFF360 - Uncharacterized protein YfgD, not an arsenate reductase, at 351,670 to 352,014
GFF360
GFF361 - ParA-like protein, at 352,117 to 352,848
GFF361
GFF362 - Sensory box/GGDEF family protein, at 352,858 to 355,158
GFF362
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2 at 351.636 kb on + strand at 351.668 kb on - strand at 351.678 kb on - strand at 351.678 kb on - strand at 351.684 kb on - strand at 351.694 kb on + strand at 351.702 kb on - strand at 351.719 kb on - strand, within GFF360 at 351.746 kb on + strand, within GFF360 at 351.752 kb on + strand, within GFF360 at 351.753 kb on + strand, within GFF360 at 351.760 kb on - strand, within GFF360 at 351.771 kb on + strand, within GFF360 at 351.780 kb on - strand, within GFF360 at 351.800 kb on - strand, within GFF360 at 351.820 kb on + strand, within GFF360 at 351.824 kb on + strand, within GFF360 at 351.852 kb on + strand, within GFF360 at 351.863 kb on + strand, within GFF360 at 351.868 kb on + strand, within GFF360 at 351.871 kb on - strand, within GFF360 at 351.880 kb on + strand, within GFF360 at 351.899 kb on + strand, within GFF360 at 351.901 kb on - strand, within GFF360 at 351.942 kb on - strand, within GFF360 at 351.990 kb on + strand at 351.990 kb on + strand at 351.990 kb on + strand at 351.998 kb on - strand at 351.998 kb on - strand at 351.998 kb on - strand at 351.998 kb on - strand at 351.998 kb on - strand at 352.073 kb on - strand at 352.082 kb on - strand at 352.114 kb on + strand at 352.117 kb on - strand at 352.139 kb on + strand at 352.147 kb on - strand at 352.147 kb on - strand at 352.185 kb on - strand at 352.202 kb on - strand, within GFF361 at 352.210 kb on - strand, within GFF361 at 352.210 kb on - strand, within GFF361 at 352.221 kb on + strand, within GFF361 at 352.221 kb on + strand, within GFF361 at 352.221 kb on + strand, within GFF361 at 352.221 kb on + strand, within GFF361 at 352.229 kb on - strand, within GFF361 at 352.229 kb on - strand, within GFF361 at 352.229 kb on - strand, within GFF361 at 352.231 kb on + strand, within GFF361 at 352.246 kb on + strand, within GFF361 at 352.252 kb on + strand, within GFF361 at 352.260 kb on + strand, within GFF361 at 352.260 kb on + strand, within GFF361 at 352.268 kb on - strand, within GFF361 at 352.268 kb on - strand, within GFF361 at 352.273 kb on - strand, within GFF361 at 352.273 kb on - strand, within GFF361 at 352.288 kb on - strand, within GFF361 at 352.291 kb on + strand, within GFF361 at 352.291 kb on + strand, within GFF361 at 352.291 kb on + strand, within GFF361 at 352.296 kb on + strand, within GFF361 at 352.298 kb on - strand, within GFF361 at 352.299 kb on - strand, within GFF361 at 352.321 kb on - strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.338 kb on + strand, within GFF361 at 352.340 kb on - strand, within GFF361 at 352.341 kb on - strand, within GFF361 at 352.343 kb on + strand, within GFF361 at 352.346 kb on - strand, within GFF361 at 352.346 kb on - strand, within GFF361 at 352.349 kb on + strand, within GFF361 at 352.354 kb on + strand, within GFF361 at 352.354 kb on + strand, within GFF361 at 352.355 kb on + strand, within GFF361 at 352.355 kb on + strand, within GFF361 at 352.355 kb on + strand, within GFF361 at 352.355 kb on + strand, within GFF361 at 352.355 kb on + strand, within GFF361 at 352.359 kb on + strand, within GFF361 at 352.362 kb on - strand, within GFF361 at 352.363 kb on - strand, within GFF361 at 352.363 kb on - strand, within GFF361 at 352.363 kb on - strand, within GFF361 at 352.363 kb on - strand, within GFF361 at 352.365 kb on + strand, within GFF361 at 352.386 kb on + strand, within GFF361 at 352.386 kb on + strand, within GFF361 at 352.386 kb on + strand, within GFF361 at 352.391 kb on + strand, within GFF361 at 352.399 kb on - strand, within GFF361 at 352.399 kb on - strand, within GFF361 at 352.434 kb on + strand, within GFF361 at 352.462 kb on + strand, within GFF361 at 352.462 kb on + strand, within GFF361 at 352.463 kb on - strand, within GFF361 at 352.470 kb on - strand, within GFF361 at 352.476 kb on - strand, within GFF361 at 352.498 kb on - strand, within GFF361 at 352.501 kb on + strand, within GFF361 at 352.519 kb on + strand, within GFF361 at 352.522 kb on - strand, within GFF361 at 352.529 kb on + strand, within GFF361 at 352.529 kb on + strand, within GFF361 at 352.537 kb on - strand, within GFF361 at 352.537 kb on - strand, within GFF361 at 352.537 kb on - strand, within GFF361 at 352.537 kb on - strand, within GFF361 at 352.556 kb on + strand, within GFF361 at 352.562 kb on - strand, within GFF361 at 352.584 kb on + strand, within GFF361 at 352.592 kb on - strand, within GFF361 at 352.592 kb on - strand, within GFF361 at 352.599 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.601 kb on + strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.609 kb on - strand, within GFF361 at 352.614 kb on - strand, within GFF361 at 352.636 kb on - strand, within GFF361 at 352.646 kb on + strand, within GFF361 at 352.662 kb on - strand, within GFF361 at 352.759 kb on + strand, within GFF361 at 352.769 kb on + strand, within GFF361 at 352.770 kb on - strand, within GFF361 at 352.777 kb on - strand at 352.792 kb on + strand at 352.792 kb on + strand at 352.792 kb on + strand at 352.792 kb on + strand at 352.792 kb on + strand at 352.792 kb on + strand at 352.792 kb on + strand at 352.799 kb on - strand at 352.810 kb on + strand at 352.834 kb on + strand at 352.842 kb on + strand at 352.842 kb on + strand at 352.842 kb on - strand at 352.844 kb on + strand at 352.844 kb on + strand at 352.844 kb on + strand at 352.850 kb on - strand at 352.850 kb on - strand at 352.851 kb on - strand at 352.855 kb on + strand at 352.855 kb on + strand at 352.855 kb on + strand at 352.861 kb on - strand at 352.868 kb on + strand at 352.868 kb on + strand at 352.868 kb on + strand at 352.868 kb on + strand at 352.868 kb on + strand at 352.868 kb on + strand at 352.868 kb on + strand at 352.868 kb on - strand at 352.873 kb on + strand at 352.873 kb on + strand at 352.873 kb on + strand at 352.873 kb on + strand at 352.873 kb on + strand at 352.873 kb on + strand at 352.876 kb on - strand at 352.876 kb on - strand at 352.881 kb on - strand at 352.881 kb on - strand at 352.881 kb on - strand at 352.892 kb on + strand at 352.937 kb on + strand at 352.942 kb on + strand at 352.942 kb on + strand at 352.942 kb on + strand at 352.943 kb on + strand at 352.943 kb on + strand at 352.968 kb on + strand at 352.978 kb on + strand at 352.978 kb on + strand at 352.978 kb on + strand at 352.978 kb on + strand at 352.981 kb on - strand at 353.002 kb on - strand at 353.002 kb on - strand at 353.003 kb on + strand at 353.004 kb on - strand at 353.004 kb on - strand at 353.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 351,636 + -0.5 351,668 - +0.9 351,678 - -0.8 351,678 - +1.5 351,684 - +0.4 351,694 + -0.9 351,702 - -2.4 351,719 - GFF360 0.14 -0.1 351,746 + GFF360 0.22 +0.6 351,752 + GFF360 0.24 -1.2 351,753 + GFF360 0.24 -0.7 351,760 - GFF360 0.26 -0.5 351,771 + GFF360 0.29 -0.4 351,780 - GFF360 0.32 -1.1 351,800 - GFF360 0.38 +1.0 351,820 + GFF360 0.43 -0.9 351,824 + GFF360 0.45 -1.0 351,852 + GFF360 0.53 +0.3 351,863 + GFF360 0.56 +0.0 351,868 + GFF360 0.57 +0.2 351,871 - GFF360 0.58 +0.0 351,880 + GFF360 0.61 +0.3 351,899 + GFF360 0.66 -2.1 351,901 - GFF360 0.67 -0.7 351,942 - GFF360 0.79 -0.5 351,990 + +0.7 351,990 + -1.1 351,990 + -1.1 351,998 - -1.0 351,998 - -1.3 351,998 - -0.6 351,998 - -0.6 351,998 - +1.9 352,073 - -0.3 352,082 - -0.1 352,114 + -0.8 352,117 - +0.3 352,139 + -0.6 352,147 - +0.9 352,147 - -0.4 352,185 - -1.4 352,202 - GFF361 0.12 -2.1 352,210 - GFF361 0.13 -0.5 352,210 - GFF361 0.13 -0.4 352,221 + GFF361 0.14 -1.1 352,221 + GFF361 0.14 -0.6 352,221 + GFF361 0.14 -0.3 352,221 + GFF361 0.14 +0.8 352,229 - GFF361 0.15 +0.5 352,229 - GFF361 0.15 -1.4 352,229 - GFF361 0.15 +0.7 352,231 + GFF361 0.16 -0.6 352,246 + GFF361 0.18 +0.9 352,252 + GFF361 0.18 -0.3 352,260 + GFF361 0.20 -0.6 352,260 + GFF361 0.20 -0.2 352,268 - GFF361 0.21 -0.4 352,268 - GFF361 0.21 -1.0 352,273 - GFF361 0.21 -0.9 352,273 - GFF361 0.21 -1.9 352,288 - GFF361 0.23 +0.0 352,291 + GFF361 0.24 -0.6 352,291 + GFF361 0.24 -1.6 352,291 + GFF361 0.24 +0.7 352,296 + GFF361 0.24 -1.2 352,298 - GFF361 0.25 -0.5 352,299 - GFF361 0.25 -1.8 352,321 - GFF361 0.28 +0.7 352,338 + GFF361 0.30 -0.4 352,338 + GFF361 0.30 -1.8 352,338 + GFF361 0.30 +0.5 352,338 + GFF361 0.30 +0.4 352,338 + GFF361 0.30 -0.0 352,338 + GFF361 0.30 +0.7 352,338 + GFF361 0.30 -1.1 352,338 + GFF361 0.30 +0.1 352,340 - GFF361 0.30 -1.1 352,341 - GFF361 0.31 -0.3 352,343 + GFF361 0.31 -0.1 352,346 - GFF361 0.31 -0.9 352,346 - GFF361 0.31 -1.0 352,349 + GFF361 0.32 -0.1 352,354 + GFF361 0.32 -1.0 352,354 + GFF361 0.32 -0.9 352,355 + GFF361 0.33 -0.8 352,355 + GFF361 0.33 -0.9 352,355 + GFF361 0.33 -1.1 352,355 + GFF361 0.33 -0.8 352,355 + GFF361 0.33 -0.2 352,359 + GFF361 0.33 -0.9 352,362 - GFF361 0.33 -0.3 352,363 - GFF361 0.34 -1.5 352,363 - GFF361 0.34 -0.6 352,363 - GFF361 0.34 -1.9 352,363 - GFF361 0.34 -1.1 352,365 + GFF361 0.34 -0.9 352,386 + GFF361 0.37 +0.8 352,386 + GFF361 0.37 -1.1 352,386 + GFF361 0.37 -1.0 352,391 + GFF361 0.37 +0.5 352,399 - GFF361 0.39 -1.1 352,399 - GFF361 0.39 -0.4 352,434 + GFF361 0.43 -0.9 352,462 + GFF361 0.47 -0.6 352,462 + GFF361 0.47 -0.6 352,463 - GFF361 0.47 +0.1 352,470 - GFF361 0.48 +0.3 352,476 - GFF361 0.49 +0.2 352,498 - GFF361 0.52 -0.6 352,501 + GFF361 0.52 +0.9 352,519 + GFF361 0.55 -1.1 352,522 - GFF361 0.55 -0.2 352,529 + GFF361 0.56 +1.7 352,529 + GFF361 0.56 -0.9 352,537 - GFF361 0.57 -0.1 352,537 - GFF361 0.57 -0.2 352,537 - GFF361 0.57 -1.5 352,537 - GFF361 0.57 -1.5 352,556 + GFF361 0.60 -0.1 352,562 - GFF361 0.61 -2.7 352,584 + GFF361 0.64 +1.2 352,592 - GFF361 0.65 -1.6 352,592 - GFF361 0.65 -0.4 352,599 + GFF361 0.66 -1.4 352,601 + GFF361 0.66 -1.4 352,601 + GFF361 0.66 +0.8 352,601 + GFF361 0.66 -1.7 352,601 + GFF361 0.66 -0.4 352,601 + GFF361 0.66 +1.1 352,601 + GFF361 0.66 -0.2 352,601 + GFF361 0.66 -0.4 352,601 + GFF361 0.66 -0.0 352,609 - GFF361 0.67 -0.1 352,609 - GFF361 0.67 -0.8 352,609 - GFF361 0.67 +1.0 352,609 - GFF361 0.67 -0.9 352,609 - GFF361 0.67 +0.7 352,609 - GFF361 0.67 +0.2 352,609 - GFF361 0.67 -1.7 352,609 - GFF361 0.67 +0.4 352,609 - GFF361 0.67 +0.7 352,614 - GFF361 0.68 -0.3 352,636 - GFF361 0.71 -1.5 352,646 + GFF361 0.72 +0.5 352,662 - GFF361 0.74 +1.5 352,759 + GFF361 0.88 -0.2 352,769 + GFF361 0.89 -0.6 352,770 - GFF361 0.89 +0.1 352,777 - -1.1 352,792 + -0.0 352,792 + -1.4 352,792 + -0.5 352,792 + -1.0 352,792 + -0.7 352,792 + +0.2 352,792 + -1.1 352,799 - +0.7 352,810 + -0.4 352,834 + -0.9 352,842 + -0.7 352,842 + -0.4 352,842 - +0.2 352,844 + -0.9 352,844 + +0.9 352,844 + -0.9 352,850 - -0.6 352,850 - -0.1 352,851 - -1.6 352,855 + -1.1 352,855 + -0.6 352,855 + -0.7 352,861 - -0.3 352,868 + -1.4 352,868 + -1.3 352,868 + -0.6 352,868 + +1.1 352,868 + -0.8 352,868 + -0.4 352,868 + -1.1 352,868 - +0.2 352,873 + +1.7 352,873 + +0.6 352,873 + -1.6 352,873 + -1.1 352,873 + -1.2 352,873 + +0.1 352,876 - -0.1 352,876 - +0.3 352,881 - +1.2 352,881 - +0.2 352,881 - -0.6 352,892 + -2.0 352,937 + -0.7 352,942 + -0.3 352,942 + -0.4 352,942 + -1.1 352,943 + -1.0 352,943 + +0.7 352,968 + -0.4 352,978 + -0.3 352,978 + +0.1 352,978 + -0.5 352,978 + -0.6 352,981 - -0.4 353,002 - +0.5 353,002 - -0.9 353,003 + -0.8 353,004 - +0.1 353,004 - -0.8 353,004 - -1.2
Or see this region's nucleotide sequence