Strain Fitness in Sphingobium sp. HT1-2 around GFF3556

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,599,668	-				-1.4
3,599,685	-		GFF3555	0.11	-0.4
3,599,695	-		GFF3555	0.12	-1.4
3,599,695	-		GFF3555	0.12	-0.2
3,599,695	-		GFF3555	0.12	-1.0
3,599,699	-		GFF3555	0.13	-0.8
3,599,699	-		GFF3555	0.13	-0.5
3,599,701	-		GFF3555	0.13	-0.7
3,599,701	-		GFF3555	0.13	+0.3
3,599,718	-		GFF3555	0.15	-1.6
3,599,721	-		GFF3555	0.16	+0.2
3,599,761	+		GFF3555	0.21	-0.7
3,599,766	-		GFF3555	0.21	-0.3
3,599,791	-		GFF3555	0.25	-0.6
3,599,791	-		GFF3555	0.25	-0.6
3,599,791	-		GFF3555	0.25	-0.7
3,599,791	-		GFF3555	0.25	+0.6
3,599,803	+		GFF3555	0.26	-0.6
3,599,803	-		GFF3555	0.26	-0.3
3,599,803	-		GFF3555	0.26	-0.9
3,599,803	-		GFF3555	0.26	-0.5
3,599,803	-		GFF3555	0.26	-1.2
3,599,805	+		GFF3555	0.26	-0.8
3,599,811	-		GFF3555	0.27	-0.6
3,599,811	-		GFF3555	0.27	-0.9
3,599,811	-		GFF3555	0.27	-1.5
3,599,811	-		GFF3555	0.27	+0.3
3,599,813	-		GFF3555	0.27	-0.9
3,599,823	+		GFF3555	0.29	-1.0
3,599,823	+		GFF3555	0.29	+0.2
3,599,823	+		GFF3555	0.29	-1.0
3,599,830	+		GFF3555	0.30	-0.5
3,599,830	+		GFF3555	0.30	-0.2
3,599,830	+		GFF3555	0.30	-0.3
3,599,830	+		GFF3555	0.30	-0.5
3,599,831	-		GFF3555	0.30	-1.7
3,599,831	-		GFF3555	0.30	-0.4
3,599,831	-		GFF3555	0.30	+0.4
3,599,831	-		GFF3555	0.30	+1.4
3,599,838	-		GFF3555	0.31	-0.3
3,599,849	-		GFF3555	0.32	-0.6
3,599,859	-		GFF3555	0.33	-1.2
3,599,890	-		GFF3555	0.37	+0.3
3,599,890	-		GFF3555	0.37	+0.5
3,599,894	-		GFF3555	0.38	-0.3
3,599,894	-		GFF3555	0.38	+0.6
3,599,917	-		GFF3555	0.41	+0.3
3,599,941	-		GFF3555	0.44	+1.1
3,599,965	+		GFF3555	0.47	-0.5
3,599,973	-		GFF3555	0.48	-0.0
3,599,973	-		GFF3555	0.48	-0.2
3,599,987	-		GFF3555	0.50	+0.4
3,600,005	-		GFF3555	0.52	-1.4
3,600,010	-		GFF3555	0.52	-0.6
3,600,012	-		GFF3555	0.53	+0.6
3,600,025	-		GFF3555	0.54	+0.7
3,600,027	-		GFF3555	0.55	-1.3
3,600,064	-		GFF3555	0.59	-0.5
3,600,075	+		GFF3555	0.61	-0.2
3,600,081	-		GFF3555	0.62	+0.3
3,600,082	-		GFF3555	0.62	+1.3
3,600,151	-		GFF3555	0.70	-0.6
3,600,169	+		GFF3555	0.73	-0.6
3,600,172	-		GFF3555	0.73	-0.1
3,600,172	-		GFF3555	0.73	-0.5
3,600,187	-		GFF3555	0.75	+0.6
3,600,187	-		GFF3555	0.75	-1.3
3,600,187	-		GFF3555	0.75	-1.3
3,600,198	+		GFF3555	0.77	-1.0
3,600,198	+		GFF3555	0.77	+0.8
3,600,198	+		GFF3555	0.77	-0.5
3,600,198	+		GFF3555	0.77	+0.7
3,600,206	-		GFF3555	0.78	-1.4
3,600,206	-		GFF3555	0.78	-1.8
3,600,206	-		GFF3555	0.78	+0.7
3,600,219	-		GFF3555	0.79	-0.1
3,600,221	-		GFF3555	0.79	-0.5
3,600,221	-		GFF3555	0.79	-1.7
3,600,221	-		GFF3555	0.79	+0.7
3,600,283	+		GFF3555	0.87	+0.3
3,600,288	+		GFF3555	0.88	-0.3
3,600,318	+				-0.2
3,600,318	+				+0.4
3,600,319	+				-0.2
3,600,326	-				+1.0
3,600,326	-				-0.2
3,600,327	-				+0.3
3,600,327	-				+1.6
3,600,327	-				-1.4
3,600,327	-				-0.7
3,600,327	-				-0.4
3,600,327	-				-0.7
3,600,327	-				+0.1
3,600,328	-				+1.5
3,600,345	-				-0.0
3,600,345	-				+0.0
3,600,345	-				-0.1
3,600,407	-				-0.7
3,600,416	-				+0.9
3,600,438	-				-0.8
3,600,438	-				-1.8
3,600,438	-				-0.8
3,600,438	-				-0.0
3,600,518	-				-0.4
3,600,544	-				+0.5
3,600,544	-				-0.1
3,600,560	-				-0.8
3,600,564	-				-1.2
3,600,572	-				-1.3
3,600,582	-				-1.5
3,600,608	+				-0.8
3,600,609	-				-1.0
3,600,609	-				+1.0
3,600,621	-				-0.8
3,600,623	-				-0.9
3,600,701	+				-0.5
3,600,744	-				-0.9
3,600,758	-		GFF3556	0.10	-0.3
3,600,759	-		GFF3556	0.11	-0.8
3,600,786	+		GFF3556	0.13	-0.0
3,600,787	-		GFF3556	0.13	-1.7
3,600,794	-		GFF3556	0.13	-1.9
3,600,794	-		GFF3556	0.13	+0.0
3,600,796	+		GFF3556	0.14	-0.9
3,600,796	+		GFF3556	0.14	-0.8
3,600,796	+		GFF3556	0.14	-0.1
3,600,799	+		GFF3556	0.14	-1.0
3,600,804	+		GFF3556	0.14	-0.5
3,600,804	+		GFF3556	0.14	+1.2
3,600,804	-		GFF3556	0.14	+0.4
3,600,809	+		GFF3556	0.15	-0.3
3,600,809	+		GFF3556	0.15	-0.8
3,600,809	+		GFF3556	0.15	-1.0
3,600,812	-		GFF3556	0.15	-1.6
3,600,812	-		GFF3556	0.15	-1.4
3,600,812	-		GFF3556	0.15	-0.6
3,600,812	-		GFF3556	0.15	+0.9
3,600,812	-		GFF3556	0.15	-0.2
3,600,812	-		GFF3556	0.15	-2.2
3,600,812	-		GFF3556	0.15	+0.8
3,600,812	-		GFF3556	0.15	-1.7
3,600,812	-		GFF3556	0.15	+0.8
3,600,812	-		GFF3556	0.15	-0.4
3,600,812	-		GFF3556	0.15	+0.6
3,600,812	-		GFF3556	0.15	-1.7
3,600,812	-		GFF3556	0.15	-0.8
3,600,812	-		GFF3556	0.15	+0.6
3,600,812	-		GFF3556	0.15	-1.6
3,600,817	-		GFF3556	0.15	-1.1
3,600,830	-		GFF3556	0.16	+0.0
3,600,855	+		GFF3556	0.18	-1.5
3,600,855	+		GFF3556	0.18	+0.3
3,600,855	+		GFF3556	0.18	-0.2
3,600,855	+		GFF3556	0.18	-1.3
3,600,855	+		GFF3556	0.18	-0.5
3,600,855	+		GFF3556	0.18	+0.1
3,600,863	-		GFF3556	0.19	-0.0
3,600,863	-		GFF3556	0.19	-1.4
3,600,863	-		GFF3556	0.19	+1.2
3,600,863	-		GFF3556	0.19	-1.9
3,600,863	-		GFF3556	0.19	-2.2
3,600,863	-		GFF3556	0.19	-0.3
3,600,863	-		GFF3556	0.19	-0.4
3,600,863	-		GFF3556	0.19	-0.4
3,600,863	-		GFF3556	0.19	-1.4
3,600,863	-		GFF3556	0.19	+0.4
3,600,863	-		GFF3556	0.19	+0.4
3,600,863	-		GFF3556	0.19	-0.6
3,600,868	-		GFF3556	0.19	-0.5
3,600,868	-		GFF3556	0.19	+0.6
3,600,876	+		GFF3556	0.20	-0.5
3,600,895	+		GFF3556	0.22	-0.8
3,600,895	+		GFF3556	0.22	+0.0
3,600,903	+		GFF3556	0.22	-0.2
3,600,903	-		GFF3556	0.22	-0.8
3,600,903	-		GFF3556	0.22	+0.7
3,600,904	+		GFF3556	0.22	+0.5
3,600,911	-		GFF3556	0.23	-1.4
3,600,911	-		GFF3556	0.23	-0.7
3,600,917	-		GFF3556	0.23	-1.0
3,600,988	-		GFF3556	0.29	+0.1
3,600,988	-		GFF3556	0.29	-1.3
3,601,001	-		GFF3556	0.30	-0.3
3,601,020	-		GFF3556	0.32	-0.8
3,601,038	-		GFF3556	0.33	-0.3
3,601,088	-		GFF3556	0.37	+0.7
3,601,101	-		GFF3556	0.38	-0.1
3,601,113	-		GFF3556	0.39	-0.9
3,601,128	-		GFF3556	0.41	-0.4
3,601,128	-		GFF3556	0.41	-0.2
3,601,151	-		GFF3556	0.42	-1.8
3,601,158	-		GFF3556	0.43	-0.6
3,601,168	-		GFF3556	0.44	-0.3
3,601,210	-		GFF3556	0.47	-0.7
3,601,245	-		GFF3556	0.50	-0.2
3,601,247	+		GFF3556	0.50	+1.0
3,601,279	+		GFF3556	0.53	+0.9
3,601,279	+		GFF3556	0.53	-1.1
3,601,292	-		GFF3556	0.54	-0.4
3,601,293	+		GFF3556	0.54	+0.5
3,601,296	-		GFF3556	0.54	-0.3
3,601,303	+		GFF3556	0.55	-0.8
3,601,303	+		GFF3556	0.55	+0.7
3,601,311	-		GFF3556	0.55	-0.3
3,601,311	-		GFF3556	0.55	-0.4
3,601,313	+		GFF3556	0.56	-1.6
3,601,321	+		GFF3556	0.56	-1.6
3,601,321	-		GFF3556	0.56	+0.1
3,601,321	-		GFF3556	0.56	-0.0
3,601,321	-		GFF3556	0.56	-0.3
3,601,355	+		GFF3556	0.59	-2.2
3,601,355	-		GFF3556	0.59	+0.0
3,601,357	+		GFF3556	0.59	-0.6
3,601,358	-		GFF3556	0.59	+0.5
3,601,358	-		GFF3556	0.59	-0.8
3,601,358	-		GFF3556	0.59	+0.4
3,601,364	-		GFF3556	0.60	+0.8
3,601,369	-		GFF3556	0.60	-0.5
3,601,369	-		GFF3556	0.60	-0.8
3,601,375	+		GFF3556	0.61	-0.2
3,601,375	+		GFF3556	0.61	-0.0
3,601,389	-		GFF3556	0.62	+0.8
3,601,389	-		GFF3556	0.62	-0.5
3,601,400	-		GFF3556	0.63	-0.4
3,601,403	+		GFF3556	0.63	+0.2
3,601,403	+		GFF3556	0.63	+0.8
3,601,403	+		GFF3556	0.63	-0.2
3,601,403	+		GFF3556	0.63	+0.5
3,601,403	+		GFF3556	0.63	-1.7
3,601,411	-		GFF3556	0.64	-0.0
3,601,411	-		GFF3556	0.64	+0.3
3,601,411	-		GFF3556	0.64	+0.4
3,601,414	+		GFF3556	0.64	+0.5
3,601,422	-		GFF3556	0.64	-0.2
3,601,437	-		GFF3556	0.66	+0.2
3,601,439	+		GFF3556	0.66	+0.4
3,601,459	+		GFF3556	0.67	+1.1
3,601,467	-		GFF3556	0.68	-1.1
3,601,467	-		GFF3556	0.68	-1.4
3,601,478	+		GFF3556	0.69	-1.2
3,601,479	+		GFF3556	0.69	-0.1
3,601,498	+		GFF3556	0.71	+0.8
3,601,498	+		GFF3556	0.71	+0.9
3,601,498	+		GFF3556	0.71	-1.5
3,601,498	+		GFF3556	0.71	-0.5
3,601,498	+		GFF3556	0.71	-1.0
3,601,501	-		GFF3556	0.71	+1.3
3,601,506	-		GFF3556	0.71	-1.6
3,601,506	-		GFF3556	0.71	-0.6
3,601,512	+		GFF3556	0.72	-0.0
3,601,512	+		GFF3556	0.72	+0.8
3,601,512	+		GFF3556	0.72	+0.9
3,601,517	+		GFF3556	0.72	+0.6
3,601,520	-		GFF3556	0.72	-1.0
3,601,520	-		GFF3556	0.72	-0.7
3,601,520	-		GFF3556	0.72	-0.6
3,601,525	-		GFF3556	0.73	+0.6
3,601,551	+		GFF3556	0.75	-0.3
3,601,551	+		GFF3556	0.75	+0.6
3,601,556	+		GFF3556	0.75	-0.7
3,601,559	-		GFF3556	0.76	-1.5
3,601,559	-		GFF3556	0.76	+0.5
3,601,559	-		GFF3556	0.76	-0.0
3,601,559	-		GFF3556	0.76	-0.9
3,601,559	-		GFF3556	0.76	-1.1
3,601,559	-		GFF3556	0.76	+1.1
3,601,559	-		GFF3556	0.76	+1.0
3,601,559	-		GFF3556	0.76	-1.4
3,601,564	-		GFF3556	0.76	+0.1
3,601,592	-		GFF3556	0.78	+0.7
3,601,592	-		GFF3556	0.78	+0.9
3,601,602	-		GFF3556	0.79	+0.3
3,601,603	+		GFF3556	0.79	-0.2
3,601,603	+		GFF3556	0.79	-0.2
3,601,603	+		GFF3556	0.79	-0.0
3,601,611	-		GFF3556	0.80	-1.9
3,601,611	-		GFF3556	0.80	-0.1
3,601,611	-		GFF3556	0.80	+0.7
3,601,611	-		GFF3556	0.80	-0.7
3,601,611	-		GFF3556	0.80	-0.6
3,601,618	+		GFF3556	0.80	+0.4
3,601,620	+		GFF3556	0.81	-0.7
3,601,626	-		GFF3556	0.81	+1.3
3,601,627	+		GFF3556	0.81	-1.8
3,601,627	-		GFF3556	0.81	-0.3
3,601,628	-		GFF3556	0.81	-0.7
3,601,628	-		GFF3556	0.81	+1.3
3,601,651	+		GFF3556	0.83	-1.2
3,601,663	+		GFF3556	0.84	+0.5
3,601,663	+		GFF3556	0.84	-0.3
3,601,663	+		GFF3556	0.84	-1.0
3,601,663	+		GFF3556	0.84	+1.3
3,601,663	+		GFF3556	0.84	+0.9
3,601,663	+		GFF3556	0.84	-1.2
3,601,663	+		GFF3556	0.84	-0.4
3,601,663	+		GFF3556	0.84	+1.5
3,601,663	+		GFF3556	0.84	-0.3
3,601,663	+		GFF3556	0.84	-1.4
3,601,663	+		GFF3556	0.84	-0.5
3,601,663	+		GFF3556	0.84	+0.7
3,601,663	+		GFF3556	0.84	-0.3
3,601,663	+		GFF3556	0.84	-1.6
3,601,663	+		GFF3556	0.84	-1.2
3,601,663	+		GFF3556	0.84	+0.5
3,601,663	+		GFF3556	0.84	-0.2
3,601,663	+		GFF3556	0.84	-0.8
3,601,663	+		GFF3556	0.84	-0.8
3,601,663	+		GFF3556	0.84	-0.3
3,601,670	+		GFF3556	0.85	-0.5
3,601,670	+		GFF3556	0.85	+0.1
3,601,671	-		GFF3556	0.85	-0.2
3,601,671	-		GFF3556	0.85	-0.3
3,601,671	-		GFF3556	0.85	-1.1
3,601,671	-		GFF3556	0.85	-1.1
3,601,671	-		GFF3556	0.85	-1.3
3,601,671	-		GFF3556	0.85	+0.5
3,601,671	-		GFF3556	0.85	-1.5
3,601,671	-		GFF3556	0.85	-1.4
3,601,671	-		GFF3556	0.85	-0.1
3,601,671	-		GFF3556	0.85	+1.4
3,601,671	-		GFF3556	0.85	-0.5
3,601,671	-		GFF3556	0.85	-0.7
3,601,671	-		GFF3556	0.85	+0.6
3,601,671	-		GFF3556	0.85	-1.4
3,601,671	-		GFF3556	0.85	-0.7
3,601,671	-		GFF3556	0.85	-0.9
3,601,671	-		GFF3556	0.85	+0.9
3,601,671	-		GFF3556	0.85	-0.0
3,601,671	-		GFF3556	0.85	-1.5
3,601,671	-		GFF3556	0.85	-1.3
3,601,671	-		GFF3556	0.85	-1.4
3,601,671	-		GFF3556	0.85	-0.7
3,601,671	-		GFF3556	0.85	+0.9
3,601,671	-		GFF3556	0.85	+0.3
3,601,671	-		GFF3556	0.85	-1.3
3,601,671	-		GFF3556	0.85	-1.0
3,601,671	-		GFF3556	0.85	-0.0
3,601,671	-		GFF3556	0.85	+0.5
3,601,671	-		GFF3556	0.85	+1.2
3,601,672	-		GFF3556	0.85	+0.3
3,601,678	-		GFF3556	0.85	-1.3
3,601,680	-		GFF3556	0.85	-1.3
3,601,686	-		GFF3556	0.86	-0.3
3,601,686	-		GFF3556	0.86	-0.2
3,601,701	+		GFF3556	0.87	-1.9
3,601,706	+		GFF3556	0.88	+0.8
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