Strain Fitness in Sphingobium sp. HT1-2 around GFF3538

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,585,429	+				-1.5
3,585,429	+				-1.9
3,585,429	+				-1.7
3,585,429	+				-0.9
3,585,435	+				-1.8
3,585,435	+				-0.5
3,585,437	-				-1.6
3,585,437	-				-1.9
3,585,440	+				-0.7
3,585,445	-				-1.4
3,585,451	+				-0.5
3,585,464	-				-0.7
3,585,502	-				-1.8
3,585,502	-				-0.8
3,585,507	+				-0.6
3,585,520	-				-1.9
3,585,637	+		GFF3537	0.20	+0.2
3,585,637	+		GFF3537	0.20	-0.9
3,585,653	+		GFF3537	0.22	-1.9
3,585,665	-		GFF3537	0.23	-1.0
3,585,665	-		GFF3537	0.23	-1.3
3,585,680	+		GFF3537	0.24	-2.4
3,585,686	+		GFF3537	0.25	-0.4
3,585,688	-		GFF3537	0.25	-2.8
3,585,701	-		GFF3537	0.26	+0.9
3,585,712	-		GFF3537	0.27	-0.8
3,585,712	-		GFF3537	0.27	-2.8
3,585,712	-		GFF3537	0.27	-0.6
3,585,712	-		GFF3537	0.27	-1.8
3,585,765	-		GFF3537	0.33	-0.9
3,585,767	+		GFF3537	0.33	-1.9
3,585,774	+		GFF3537	0.34	-1.7
3,585,776	-		GFF3537	0.34	-1.7
3,585,782	-		GFF3537	0.35	-2.6
3,585,791	+		GFF3537	0.35	-1.0
3,585,799	-		GFF3537	0.36	-0.4
3,585,806	+		GFF3537	0.37	-3.6
3,585,806	+		GFF3537	0.37	-1.9
3,585,806	+		GFF3537	0.37	-2.4
3,585,806	+		GFF3537	0.37	-2.0
3,585,806	+		GFF3537	0.37	-1.0
3,585,806	+		GFF3537	0.37	-1.7
3,585,806	+		GFF3537	0.37	-0.6
3,585,806	+		GFF3537	0.37	-1.7
3,585,806	+		GFF3537	0.37	-1.3
3,585,814	-		GFF3537	0.38	-1.7
3,585,814	-		GFF3537	0.38	-0.2
3,585,814	-		GFF3537	0.38	-1.8
3,585,814	-		GFF3537	0.38	-0.2
3,585,814	-		GFF3537	0.38	-1.3
3,585,814	-		GFF3537	0.38	-2.4
3,585,846	+		GFF3537	0.41	-0.6
3,585,861	-		GFF3537	0.42	-1.8
3,585,895	+		GFF3537	0.46	-1.8
3,585,951	-		GFF3537	0.52	-0.8
3,585,952	-		GFF3537	0.52	-2.0
3,585,952	-		GFF3537	0.52	-0.3
3,585,960	-		GFF3537	0.52	-1.7
3,585,962	-		GFF3537	0.53	-1.1
3,586,001	-		GFF3537	0.57	-1.0
3,586,004	-		GFF3537	0.57	-0.2
3,586,017	-		GFF3537	0.58	-1.3
3,586,021	+		GFF3537	0.59	-2.1
3,586,021	+		GFF3537	0.59	-0.6
3,586,021	+		GFF3537	0.59	-2.3
3,586,021	+		GFF3537	0.59	-1.7
3,586,021	+		GFF3537	0.59	-2.4
3,586,021	+		GFF3537	0.59	-0.8
3,586,026	+		GFF3537	0.59	-0.7
3,586,029	-		GFF3537	0.59	-1.4
3,586,029	-		GFF3537	0.59	+0.3
3,586,029	-		GFF3537	0.59	-0.8
3,586,029	-		GFF3537	0.59	-1.2
3,586,029	-		GFF3537	0.59	-2.4
3,586,050	+		GFF3537	0.62	-1.6
3,586,058	-		GFF3537	0.62	-0.6
3,586,058	-		GFF3537	0.62	-0.3
3,586,058	-		GFF3537	0.62	-1.8
3,586,058	-		GFF3537	0.62	-1.7
3,586,091	+		GFF3537	0.66	-2.3
3,586,099	-		GFF3537	0.66	-0.3
3,586,110	-		GFF3537	0.68	-0.7
3,586,141	-		GFF3537	0.71	-0.4
3,586,141	-		GFF3537	0.71	-1.6
3,586,164	+		GFF3537	0.73	-1.3
3,586,197	-		GFF3537	0.76	-0.3
3,586,206	-		GFF3537	0.77	-2.3
3,586,216	-		GFF3537	0.78	-0.6
3,586,255	+		GFF3537	0.82	-2.4
3,586,260	+		GFF3537	0.83	-2.3
3,586,260	+		GFF3537	0.83	-1.5
3,586,260	+		GFF3537	0.83	-1.6
3,586,260	+		GFF3537	0.83	-1.0
3,586,260	+		GFF3537	0.83	-1.6
3,586,264	-		GFF3537	0.83	-0.2
3,586,268	-		GFF3537	0.83	-0.4
3,586,268	-		GFF3537	0.83	-1.4
3,586,268	-		GFF3537	0.83	-1.8
3,586,294	+		GFF3537	0.86	-1.8
3,586,294	+		GFF3537	0.86	-1.1
3,586,302	-		GFF3537	0.87	-2.1
3,586,307	-		GFF3537	0.87	-0.3
3,586,320	+		GFF3537	0.89	-3.6
3,586,326	+		GFF3537	0.89	-1.8
3,586,363	-				-1.9
3,586,363	-				-2.1
3,586,363	-				-0.4
3,586,363	-				+0.3
3,586,363	-				-1.6
3,586,363	-				-3.0
3,586,363	-				-2.1
3,586,404	+				-0.4
3,586,410	-				-1.7
3,586,432	+				-1.7
3,586,440	-				-0.9
3,586,463	+				-0.4
3,586,481	+				-0.4
3,586,481	+				-1.1
3,586,481	+				-1.7
3,586,481	+				-1.4
3,586,481	+				-1.2
3,586,488	+				-1.6
3,586,509	+		GFF3538	0.10	-1.3
3,586,517	-		GFF3538	0.11	-1.0
3,586,535	-		GFF3538	0.14	-1.3
3,586,550	+		GFF3538	0.15	-1.4
3,586,557	+		GFF3538	0.16	-0.6
3,586,557	+		GFF3538	0.16	-1.4
3,586,570	-		GFF3538	0.18	-0.3
3,586,594	+		GFF3538	0.21	-1.4
3,586,604	+		GFF3538	0.22	-0.6
3,586,617	-		GFF3538	0.24	-3.1
3,586,626	+		GFF3538	0.25	-1.1
3,586,626	+		GFF3538	0.25	-0.9
3,586,626	+		GFF3538	0.25	-2.3
3,586,634	-		GFF3538	0.26	-1.3
3,586,634	-		GFF3538	0.26	-0.7
3,586,634	-		GFF3538	0.26	-1.2
3,586,634	-		GFF3538	0.26	-0.7
3,586,634	-		GFF3538	0.26	-1.6
3,586,634	-		GFF3538	0.26	-1.8
3,586,634	-		GFF3538	0.26	-2.0
3,586,634	-		GFF3538	0.26	-2.4
3,586,634	-		GFF3538	0.26	-1.3
3,586,639	-		GFF3538	0.27	-1.6
3,586,650	+		GFF3538	0.28	-0.5
3,586,667	+		GFF3538	0.30	-1.9
3,586,667	+		GFF3538	0.30	-1.1
3,586,670	-		GFF3538	0.31	-0.3
3,586,675	-		GFF3538	0.31	-2.1
3,586,701	+		GFF3538	0.34	-1.0
3,586,708	+		GFF3538	0.35	-2.0
3,586,711	-		GFF3538	0.36	-1.6
3,586,718	-		GFF3538	0.37	-1.2
3,586,755	+		GFF3538	0.41	-0.4
3,586,845	+		GFF3538	0.53	-1.1
3,586,845	+		GFF3538	0.53	-1.1
3,586,845	+		GFF3538	0.53	-0.4
3,586,845	+		GFF3538	0.53	-0.6
3,586,845	+		GFF3538	0.53	-1.4
3,586,845	+		GFF3538	0.53	-0.9
3,586,848	-		GFF3538	0.53	-1.1
3,586,853	-		GFF3538	0.54	-1.1
3,586,853	-		GFF3538	0.54	-1.6
3,586,853	-		GFF3538	0.54	-0.7
3,586,883	+		GFF3538	0.57	-0.2
3,586,889	+		GFF3538	0.58	-1.3
3,586,896	-		GFF3538	0.59	-1.1
3,586,900	-		GFF3538	0.60	-1.1
3,586,903	+		GFF3538	0.60	-3.6
3,586,913	+		GFF3538	0.61	-1.2
3,586,913	+		GFF3538	0.61	-0.8
3,586,913	+		GFF3538	0.61	-2.1
3,586,913	+		GFF3538	0.61	-1.3
3,586,917	-		GFF3538	0.62	-1.3
3,586,918	+		GFF3538	0.62	-0.7
3,586,921	-		GFF3538	0.62	-2.0
3,586,921	-		GFF3538	0.62	-1.3
3,586,921	-		GFF3538	0.62	-1.3
3,586,921	-		GFF3538	0.62	-0.6
3,586,922	-		GFF3538	0.62	-2.0
3,586,928	+		GFF3538	0.63	-0.9
3,586,935	+		GFF3538	0.64	-0.6
3,586,935	+		GFF3538	0.64	-2.2
3,586,935	-		GFF3538	0.64	+1.0
3,586,943	-		GFF3538	0.65	-2.8
3,586,943	-		GFF3538	0.65	-2.3
3,586,946	+		GFF3538	0.65	-1.1
3,586,950	+		GFF3538	0.66	-3.1
3,586,954	-		GFF3538	0.66	-1.6
3,586,965	+		GFF3538	0.68	-1.2
3,586,980	+		GFF3538	0.70	-1.6
3,586,980	+		GFF3538	0.70	-2.1
3,586,980	+		GFF3538	0.70	-2.6
3,586,999	+		GFF3538	0.72	-1.8
3,586,999	+		GFF3538	0.72	-1.8
3,587,007	-		GFF3538	0.73	-1.1
3,587,038	+		GFF3538	0.77	-0.9
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-0.2
3,587,038	+		GFF3538	0.77	-1.3
3,587,038	+		GFF3538	0.77	-0.4
3,587,038	+		GFF3538	0.77	-1.5
3,587,038	+		GFF3538	0.77	-1.4
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-2.5
3,587,038	+		GFF3538	0.77	-1.9
3,587,038	+		GFF3538	0.77	-0.2
3,587,038	+		GFF3538	0.77	-0.3
3,587,038	+		GFF3538	0.77	-0.2
3,587,038	+		GFF3538	0.77	-1.6
3,587,038	+		GFF3538	0.77	-0.7
3,587,038	+		GFF3538	0.77	-3.4
3,587,038	+		GFF3538	0.77	-1.6
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-1.4
3,587,038	+		GFF3538	0.77	-1.1
3,587,038	+		GFF3538	0.77	-1.1
3,587,038	+		GFF3538	0.77	-1.8
3,587,038	+		GFF3538	0.77	-1.3
3,587,038	+		GFF3538	0.77	-1.9
3,587,038	+		GFF3538	0.77	-1.4
3,587,038	+		GFF3538	0.77	-0.6
3,587,038	+		GFF3538	0.77	-1.0
3,587,038	+		GFF3538	0.77	-2.4
3,587,038	+		GFF3538	0.77	-0.6
3,587,038	+		GFF3538	0.77	-1.6
3,587,038	+		GFF3538	0.77	-1.7
3,587,038	+		GFF3538	0.77	-1.1
3,587,038	+		GFF3538	0.77	-1.3
3,587,038	+		GFF3538	0.77	-0.7
3,587,038	+		GFF3538	0.77	-1.2
3,587,046	-		GFF3538	0.78	-0.4
3,587,046	-		GFF3538	0.78	-0.9
3,587,046	-		GFF3538	0.78	-1.8
3,587,046	-		GFF3538	0.78	-2.3
3,587,046	-		GFF3538	0.78	-1.6
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-1.1
3,587,046	-		GFF3538	0.78	-0.4
3,587,046	-		GFF3538	0.78	-1.6
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-0.2
3,587,046	-		GFF3538	0.78	-0.7
3,587,046	-		GFF3538	0.78	-2.4
3,587,046	-		GFF3538	0.78	-1.3
3,587,046	-		GFF3538	0.78	-1.8
3,587,046	-		GFF3538	0.78	-0.2
3,587,046	-		GFF3538	0.78	-1.2
3,587,046	-		GFF3538	0.78	+0.4
3,587,046	-		GFF3538	0.78	-1.1
3,587,046	-		GFF3538	0.78	-2.2
3,587,046	-		GFF3538	0.78	-1.4
3,587,046	-		GFF3538	0.78	-0.6
3,587,046	-		GFF3538	0.78	-2.6
3,587,046	-		GFF3538	0.78	-1.8
3,587,046	-		GFF3538	0.78	-1.1
3,587,046	-		GFF3538	0.78	-0.1
3,587,046	-		GFF3538	0.78	-1.4
3,587,046	-		GFF3538	0.78	-1.9
3,587,046	-		GFF3538	0.78	-2.3
3,587,046	-		GFF3538	0.78	-1.1
3,587,046	-		GFF3538	0.78	-0.6
3,587,046	-		GFF3538	0.78	-1.0
3,587,046	-		GFF3538	0.78	-0.2
3,587,056	-		GFF3538	0.79	-0.6
3,587,066	+		GFF3538	0.81	-1.7
3,587,066	+		GFF3538	0.81	-1.2
3,587,066	-		GFF3538	0.81	-0.6
3,587,066	-		GFF3538	0.81	-1.2
3,587,075	-		GFF3538	0.82	-1.2
3,587,112	-		GFF3538	0.86	-0.7
3,587,128	+		GFF3538	0.88	-1.0
3,587,133	+		GFF3538	0.89	-1.7
3,587,143	+				-0.8
3,587,143	+				-2.2
3,587,143	+				-2.0
3,587,151	-				-1.5
3,587,160	+				-1.3
3,587,163	-				-1.6
3,587,163	-				-2.2
3,587,174	+				-0.8
3,587,201	-				-1.1
3,587,202	+				-0.2
3,587,204	+				+0.6
3,587,212	-				+0.0
3,587,222	+				-0.5
3,587,222	+				-0.3
3,587,223	+				-1.3
3,587,223	+				-0.2
3,587,223	+				-0.1
3,587,231	-				-1.6
3,587,231	-				+0.1
3,587,250	-				+0.6
3,587,261	+				-0.7
3,587,261	+				+0.6
3,587,267	+		GFF3539	0.10	-0.8
3,587,278	+		GFF3539	0.13	-0.9
3,587,278	+		GFF3539	0.13	+0.1
3,587,278	+		GFF3539	0.13	+0.5
3,587,286	-		GFF3539	0.14	-0.5
3,587,286	-		GFF3539	0.14	-1.8
3,587,303	-		GFF3539	0.18	+0.3
3,587,314	+		GFF3539	0.20	+0.2
3,587,322	-		GFF3539	0.22	-1.8
3,587,349	+		GFF3539	0.27	+0.9
3,587,359	+		GFF3539	0.29	-0.4
3,587,367	-		GFF3539	0.31	-0.2
3,587,374	+		GFF3539	0.33	-1.5
3,587,383	-		GFF3539	0.34	+0.5
3,587,383	-		GFF3539	0.34	+0.5
3,587,408	-		GFF3539	0.40	+0.8
3,587,421	+		GFF3539	0.42	+0.5
3,587,421	+		GFF3539	0.42	-2.2
3,587,427	+		GFF3539	0.43	-1.3
3,587,429	-		GFF3539	0.44	-1.2
3,587,429	-		GFF3539	0.44	-0.6
3,587,429	-		GFF3539	0.44	-1.1
3,587,437	+		GFF3539	0.45	+0.0
3,587,453	+		GFF3539	0.49	-1.2
3,587,453	+		GFF3539	0.49	-0.3
3,587,469	+		GFF3539	0.52	-0.2
3,587,475	+		GFF3539	0.53	-1.5
3,587,475	+		GFF3539	0.53	+0.6
3,587,475	+		GFF3539	0.53	-1.5
3,587,475	+		GFF3539	0.53	+0.2
3,587,475	+		GFF3539	0.53	+0.1
3,587,475	+		GFF3539	0.53	+0.1
3,587,475	+		GFF3539	0.53	-0.6
3,587,477	-		GFF3539	0.54	-0.6
3,587,481	+		GFF3539	0.55	-1.3
3,587,483	-		GFF3539	0.55	+0.4
3,587,493	-		GFF3539	0.57	+0.1
3,587,498	-		GFF3539	0.58	-1.5
3,587,503	-		GFF3539	0.59	+0.3
3,587,504	-		GFF3539	0.59	-0.2
3,587,523	+		GFF3539	0.63	-0.7
3,587,528	+		GFF3539	0.64	-1.5
3,587,531	-		GFF3539	0.65	+0.3
3,587,531	-		GFF3539	0.65	+0.1
3,587,536	-		GFF3539	0.66	+0.0
3,587,536	-		GFF3539	0.66	-0.7
3,587,537	+		GFF3539	0.66	+0.0
3,587,541	-		GFF3539	0.67	+0.0
3,587,573	+		GFF3539	0.73	+1.3
3,587,585	+		GFF3539	0.76	+0.4
3,587,585	+		GFF3539	0.76	-0.5
3,587,585	+		GFF3539	0.76	+0.6
3,587,585	+		GFF3539	0.76	-2.3
3,587,596	+		GFF3539	0.78	-0.2
3,587,604	-		GFF3539	0.80	+0.9
3,587,608	+		GFF3539	0.81	-0.5
3,587,616	-		GFF3539	0.82	-0.4
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