Strain Fitness in Sphingobium sp. HT1-2 around GFF3529

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,573,766	-		GFF3528	0.18	+0.3
3,573,784	-		GFF3528	0.23	-2.1
3,573,795	-		GFF3528	0.25	+0.7
3,573,834	+		GFF3528	0.36	-0.8
3,573,845	+		GFF3528	0.39	-0.1
3,573,845	+		GFF3528	0.39	-2.1
3,573,850	+		GFF3528	0.40	-0.8
3,573,853	-		GFF3528	0.41	+0.7
3,573,853	-		GFF3528	0.41	-0.0
3,573,854	+		GFF3528	0.41	+0.2
3,573,861	+		GFF3528	0.43	+0.2
3,573,870	+		GFF3528	0.45	-0.1
3,573,879	-		GFF3528	0.48	+0.8
3,573,892	+		GFF3528	0.51	-0.6
3,573,901	+		GFF3528	0.53	-0.0
3,573,901	+		GFF3528	0.53	-1.7
3,573,904	-		GFF3528	0.54	-1.3
3,573,909	-		GFF3528	0.55	-0.7
3,573,909	-		GFF3528	0.55	+0.4
3,573,909	-		GFF3528	0.55	-0.9
3,573,909	-		GFF3528	0.55	+0.2
3,573,909	-		GFF3528	0.55	-0.2
3,573,916	+		GFF3528	0.57	-0.8
3,573,930	-		GFF3528	0.61	-0.0
3,573,968	+		GFF3528	0.71	+0.2
3,573,976	-		GFF3528	0.73	-0.2
3,573,990	+		GFF3528	0.77	-1.7
3,573,990	+		GFF3528	0.77	+0.7
3,573,990	+		GFF3528	0.77	-0.5
3,573,993	-		GFF3528	0.77	+0.4
3,574,025	+		GFF3528	0.86	+0.5
3,574,025	+		GFF3528	0.86	-1.3
3,574,033	-		GFF3528	0.88	-1.1
3,574,035	+		GFF3528	0.88	-1.1
3,574,035	+		GFF3528	0.88	-1.0
3,574,043	-				-1.0
3,574,043	-				-1.3
3,574,043	-				+0.9
3,574,043	-				+0.2
3,574,043	-				+0.3
3,574,068	+				+0.4
3,574,068	+				-0.3
3,574,076	-				-0.1
3,574,076	-				+0.5
3,574,158	-				-0.6
3,574,281	+				-0.7
3,574,281	+				+1.1
3,574,740	-				-0.7
3,574,759	-				+0.6
3,574,773	+				-0.7
3,574,773	+				-0.3
3,574,773	+				-1.1
3,574,773	+				-0.9
3,574,773	+				+0.0
3,574,773	+				-0.3
3,574,773	+				+0.7
3,574,776	-				-0.9
3,574,781	-				+0.7
3,574,786	-				-0.0
3,574,799	+				-0.7
3,574,799	+				+0.0
3,574,828	+				-0.7
3,574,836	-		GFF3529	0.10	-0.2
3,574,876	+		GFF3529	0.16	-0.3
3,574,876	+		GFF3529	0.16	+0.1
3,574,876	+		GFF3529	0.16	-0.3
3,574,884	-		GFF3529	0.17	+0.6
3,574,884	-		GFF3529	0.17	+1.3
3,574,940	-		GFF3529	0.24	-1.6
3,574,967	+		GFF3529	0.28	-1.1
3,574,975	-		GFF3529	0.29	+0.1
3,575,003	+		GFF3529	0.32	+0.2
3,575,003	+		GFF3529	0.32	-1.4
3,575,003	+		GFF3529	0.32	-1.3
3,575,003	+		GFF3529	0.32	-0.2
3,575,003	+		GFF3529	0.32	-0.2
3,575,003	+		GFF3529	0.32	-0.7
3,575,011	-		GFF3529	0.33	-0.7
3,575,011	-		GFF3529	0.33	-1.5
3,575,011	-		GFF3529	0.33	-1.5
3,575,018	-		GFF3529	0.34	-0.2
3,575,025	+		GFF3529	0.35	-0.8
3,575,028	-		GFF3529	0.36	+0.9
3,575,033	-		GFF3529	0.36	+0.7
3,575,072	+		GFF3529	0.41	-0.4
3,575,072	+		GFF3529	0.41	-0.4
3,575,080	-		GFF3529	0.42	-0.4
3,575,080	-		GFF3529	0.42	-1.0
3,575,080	-		GFF3529	0.42	-0.3
3,575,080	-		GFF3529	0.42	+0.3
3,575,082	+		GFF3529	0.43	-0.3
3,575,082	+		GFF3529	0.43	+1.1
3,575,090	-		GFF3529	0.44	+0.5
3,575,126	-		GFF3529	0.48	+0.8
3,575,140	+		GFF3529	0.50	-1.7
3,575,140	+		GFF3529	0.50	-1.7
3,575,148	-		GFF3529	0.51	-0.4
3,575,148	-		GFF3529	0.51	-0.3
3,575,166	+		GFF3529	0.54	-0.6
3,575,167	-		GFF3529	0.54	+1.3
3,575,167	-		GFF3529	0.54	-0.7
3,575,178	+		GFF3529	0.55	-0.4
3,575,178	+		GFF3529	0.55	-1.2
3,575,178	+		GFF3529	0.55	+0.1
3,575,199	+		GFF3529	0.58	+0.0
3,575,199	+		GFF3529	0.58	-0.4
3,575,199	+		GFF3529	0.58	-0.2
3,575,199	+		GFF3529	0.58	-1.3
3,575,204	+		GFF3529	0.59	-1.2
3,575,204	+		GFF3529	0.59	-1.9
3,575,205	+		GFF3529	0.59	-1.9
3,575,205	+		GFF3529	0.59	-1.0
3,575,205	+		GFF3529	0.59	+0.7
3,575,207	-		GFF3529	0.59	-0.6
3,575,207	-		GFF3529	0.59	-0.8
3,575,207	-		GFF3529	0.59	-1.1
3,575,207	-		GFF3529	0.59	+0.8
3,575,207	-		GFF3529	0.59	-0.8
3,575,212	-		GFF3529	0.60	-0.7
3,575,231	-		GFF3529	0.62	-0.4
3,575,245	-		GFF3529	0.64	-0.4
3,575,284	+		GFF3529	0.69	-0.3
3,575,292	-		GFF3529	0.70	-0.4
3,575,307	-		GFF3529	0.72	-1.0
3,575,310	-		GFF3529	0.72	-0.3
3,575,342	-		GFF3529	0.77	-1.5
3,575,366	-		GFF3529	0.80	+0.2
3,575,366	-		GFF3529	0.80	-1.5
3,575,371	-		GFF3529	0.80	+0.6
3,575,371	-		GFF3529	0.80	-0.4
3,575,371	-		GFF3529	0.80	-0.5
3,575,371	-		GFF3529	0.80	-1.5
3,575,376	-		GFF3529	0.81	-2.0
3,575,376	-		GFF3529	0.81	-1.6
3,575,384	-		GFF3529	0.82	-0.8
3,575,391	-		GFF3529	0.83	-0.4
3,575,413	-		GFF3529	0.86	-0.7
3,575,435	-		GFF3529	0.89	-0.7
3,575,437	+		GFF3529	0.89	-1.5
3,575,437	+		GFF3529	0.89	-1.2
3,575,440	-		GFF3529	0.89	-0.1
3,575,444	+				+0.8
3,575,444	+				-0.7
3,575,445	-				+1.3
3,575,445	-				-0.7
3,575,462	-				-0.6
3,575,469	+				-1.1
3,575,469	+				+0.2
3,575,469	+				-0.3
3,575,469	+				-1.0
3,575,477	-				-0.6
3,575,477	-				+0.9
3,575,483	-				-0.1
3,575,502	+				-0.7
3,575,528	+				-0.6
3,575,528	+				-0.9
3,575,528	+				+0.6
3,575,528	+				+0.0
3,575,528	+				+0.9
3,575,528	+				+0.7
3,575,536	-				-1.8
3,575,536	-				-0.3
3,575,550	-				+0.1
3,575,550	-				+0.3
3,575,560	-				-1.7
3,575,567	+				-1.1
3,575,570	-				-0.6
3,575,589	-				-0.0
3,575,589	-				+0.3
3,575,605	-				+0.7
3,575,606	+				-0.8
3,575,654	+				-2.5
3,575,659	+				-0.2
3,575,662	-				-1.4
3,575,664	+				+0.8
3,575,669	+				-1.1
3,575,669	+				+1.4
3,575,669	+				-1.5
3,575,669	+				+0.6
3,575,669	+				-1.4
3,575,712	-				-0.1
3,575,712	-				+1.0
3,575,729	+				-1.4
3,575,729	+				-0.7
3,575,735	+				-0.2
3,575,737	-				-0.9
3,575,737	-				-0.9
3,575,737	-				-2.6
3,575,737	-				+1.3
3,575,738	+				-0.9
3,575,743	-				+0.8
3,575,746	-				-1.0
3,575,761	+				-0.3
3,575,776	+		GFF3530	0.13	-0.4
3,575,776	+		GFF3530	0.13	+1.4
3,575,784	-		GFF3530	0.15	+0.3
3,575,784	-		GFF3530	0.15	+0.3
3,575,798	+		GFF3530	0.20	+0.9
3,575,798	+		GFF3530	0.20	+0.1
3,575,801	-		GFF3530	0.20	+0.1
3,575,808	+		GFF3530	0.23	-1.2
3,575,824	+		GFF3530	0.27	-0.7
3,575,827	-		GFF3530	0.28	-0.8
3,575,829	+		GFF3530	0.29	+0.5
3,575,832	-		GFF3530	0.30	+0.4
3,575,832	-		GFF3530	0.30	-0.3
3,575,857	+		GFF3530	0.37	-0.7
3,575,896	-		GFF3530	0.48	-1.4
3,575,898	+		GFF3530	0.49	+1.0
3,575,898	+		GFF3530	0.49	-1.1
3,575,902	-		GFF3530	0.50	-2.2
3,575,920	-		GFF3530	0.55	-0.9
3,575,926	+		GFF3530	0.57	-1.1
3,575,931	+		GFF3530	0.58	-0.5
3,575,939	-		GFF3530	0.61	-1.0
3,575,944	+		GFF3530	0.62	+0.1
3,575,944	-		GFF3530	0.62	+1.1
3,575,948	-		GFF3530	0.63	+0.5
3,575,961	+		GFF3530	0.67	-1.6
3,575,984	+		GFF3530	0.74	-0.4
3,575,997	-		GFF3530	0.78	-1.4
3,575,997	-		GFF3530	0.78	-1.3
3,575,998	-		GFF3530	0.78	-0.3
3,576,002	-		GFF3530	0.79	-0.6
3,576,017	+		GFF3530	0.84	-0.4
3,576,017	+		GFF3530	0.84	-0.1
3,576,024	-		GFF3530	0.86	+1.8
3,576,032	-		GFF3530	0.88	-0.7
3,576,050	+				+1.0
3,576,062	+				+1.2
3,576,080	-				+0.1
3,576,080	-				+1.7
3,576,083	+				-0.3
3,576,083	+				+0.3
3,576,083	+				+0.8
3,576,083	+				-0.3
3,576,086	-				-1.3
3,576,088	+				-0.3
3,576,091	-				-0.4
3,576,093	+				-0.3
3,576,093	+				+1.1
3,576,093	+				-1.6
3,576,093	+				+0.8
3,576,096	-				-0.4
3,576,096	-				-0.4
3,576,096	-				-2.0
3,576,101	-				-1.0
3,576,101	-				-0.8
3,576,101	-				-1.1
3,576,101	-				-0.6
3,576,120	-				+2.0
3,576,125	-				+0.6
3,576,131	+				-1.4
3,576,131	+				+0.3
3,576,144	-				-2.2
3,576,171	-				-0.8
3,576,181	-				+0.8
3,576,196	+				-0.9
3,576,196	+				-0.1
3,576,196	+				-1.6
3,576,203	-				-0.7
3,576,213	-				+0.9
3,576,214	-				-1.0
3,576,223	+				-1.1
3,576,223	+				-0.7
3,576,223	+				+0.4
3,576,223	+				-0.1
3,576,223	+				-1.1
3,576,223	+				-0.2
3,576,223	+				-0.8
3,576,223	+				-1.5
3,576,223	+				-0.1
3,576,223	+				-1.8
3,576,223	+				-1.4
3,576,226	-				-1.2
3,576,231	-		GFF3531	0.10	+0.4
3,576,231	-		GFF3531	0.10	+1.0
3,576,231	-		GFF3531	0.10	-0.2
3,576,231	-		GFF3531	0.10	+0.5
3,576,231	-		GFF3531	0.10	-0.6
3,576,233	+		GFF3531	0.10	-1.3
3,576,236	-		GFF3531	0.10	-0.7
3,576,236	-		GFF3531	0.10	-0.1
3,576,246	-		GFF3531	0.11	-0.1
3,576,246	-		GFF3531	0.11	-0.2
3,576,282	+		GFF3531	0.14	-0.6
3,576,283	+		GFF3531	0.14	+0.0
3,576,283	+		GFF3531	0.14	+0.6
3,576,290	-		GFF3531	0.14	+0.8
3,576,291	-		GFF3531	0.14	-1.4
3,576,291	-		GFF3531	0.14	+0.3
3,576,295	-		GFF3531	0.15	+0.0
3,576,297	+		GFF3531	0.15	-1.0
3,576,310	-		GFF3531	0.16	-0.9
3,576,316	+		GFF3531	0.16	+0.6
3,576,321	-		GFF3531	0.17	-0.5
3,576,324	-		GFF3531	0.17	-0.9
3,576,342	-		GFF3531	0.18	-1.1
3,576,373	+		GFF3531	0.20	-1.1
3,576,386	-		GFF3531	0.21	+1.3
3,576,388	+		GFF3531	0.21	-0.2
3,576,396	-		GFF3531	0.22	-0.3
3,576,398	+		GFF3531	0.22	-1.5
3,576,406	+		GFF3531	0.23	-1.8
3,576,411	+		GFF3531	0.23	-1.0
3,576,424	-		GFF3531	0.24	+1.7
3,576,424	-		GFF3531	0.24	-0.3
3,576,439	+		GFF3531	0.25	-1.4
3,576,439	+		GFF3531	0.25	-0.3
3,576,446	+		GFF3531	0.25	-0.7
3,576,462	-		GFF3531	0.27	-0.8
3,576,466	-		GFF3531	0.27	+0.2
3,576,474	+		GFF3531	0.27	-0.3
3,576,477	-		GFF3531	0.28	+0.8
3,576,479	+		GFF3531	0.28	+0.4
3,576,482	-		GFF3531	0.28	-0.8
3,576,482	-		GFF3531	0.28	-0.2
3,576,493	+		GFF3531	0.29	+0.1
3,576,493	+		GFF3531	0.29	-1.7
3,576,501	-		GFF3531	0.29	+0.4
3,576,501	-		GFF3531	0.29	-2.1
3,576,501	-		GFF3531	0.29	-1.5