Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF349 and GFF350 are separated by 102 nucleotides GFF350 and GFF351 are separated by 1 nucleotides GFF351 and GFF352 are separated by 9 nucleotides
GFF349 - Capsule polysaccharide export protein, at 341,061 to 342,737
GFF349
GFF350 - Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB, at 342,840 to 344,135
GFF350
GFF351 - 'Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)' transl_table=11, at 344,137 to 344,577
GFF351
GFF352 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 344,587 to 345,222
GFF352
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 341.852 kb on + strand, within GFF349 at 341.860 kb on - strand, within GFF349 at 341.868 kb on + strand, within GFF349 at 341.910 kb on - strand, within GFF349 at 341.914 kb on + strand, within GFF349 at 341.924 kb on + strand, within GFF349 at 341.977 kb on + strand, within GFF349 at 342.039 kb on - strand, within GFF349 at 342.184 kb on - strand, within GFF349 at 342.199 kb on - strand, within GFF349 at 342.238 kb on - strand, within GFF349 at 342.247 kb on + strand, within GFF349 at 342.255 kb on - strand, within GFF349 at 342.255 kb on - strand, within GFF349 at 342.255 kb on - strand, within GFF349 at 342.262 kb on + strand, within GFF349 at 342.270 kb on - strand, within GFF349 at 342.301 kb on - strand, within GFF349 at 342.301 kb on - strand, within GFF349 at 342.329 kb on - strand, within GFF349 at 342.338 kb on + strand, within GFF349 at 342.376 kb on - strand, within GFF349 at 342.381 kb on - strand, within GFF349 at 342.421 kb on + strand, within GFF349 at 342.421 kb on + strand, within GFF349 at 342.429 kb on - strand, within GFF349 at 342.429 kb on - strand, within GFF349 at 342.438 kb on + strand, within GFF349 at 342.532 kb on - strand, within GFF349 at 342.540 kb on - strand, within GFF349 at 342.587 kb on + strand at 342.621 kb on + strand at 342.629 kb on - strand at 342.681 kb on - strand at 342.722 kb on - strand at 342.722 kb on - strand at 342.744 kb on - strand at 342.747 kb on + strand at 342.749 kb on + strand at 342.751 kb on + strand at 342.764 kb on - strand at 342.765 kb on + strand at 342.769 kb on + strand at 342.769 kb on + strand at 342.769 kb on + strand at 342.769 kb on + strand at 342.774 kb on + strand at 342.777 kb on - strand at 342.777 kb on - strand at 342.784 kb on + strand at 342.784 kb on + strand at 342.792 kb on - strand at 342.792 kb on - strand at 342.792 kb on - strand at 342.792 kb on - strand at 342.792 kb on - strand at 342.812 kb on - strand at 342.814 kb on + strand at 342.846 kb on - strand at 342.854 kb on + strand at 342.858 kb on - strand at 342.908 kb on + strand at 343.000 kb on + strand, within GFF350 at 343.010 kb on + strand, within GFF350 at 343.048 kb on - strand, within GFF350 at 343.124 kb on - strand, within GFF350 at 343.161 kb on - strand, within GFF350 at 343.227 kb on - strand, within GFF350 at 343.276 kb on + strand, within GFF350 at 343.297 kb on + strand, within GFF350 at 343.305 kb on - strand, within GFF350 at 343.338 kb on - strand, within GFF350 at 343.392 kb on - strand, within GFF350 at 343.427 kb on + strand, within GFF350 at 343.427 kb on - strand, within GFF350 at 343.435 kb on - strand, within GFF350 at 343.472 kb on + strand, within GFF350 at 343.480 kb on - strand, within GFF350 at 343.504 kb on - strand, within GFF350 at 343.558 kb on - strand, within GFF350 at 343.558 kb on - strand, within GFF350 at 343.590 kb on - strand, within GFF350 at 343.605 kb on + strand, within GFF350 at 343.627 kb on + strand, within GFF350 at 343.683 kb on - strand, within GFF350 at 343.685 kb on + strand, within GFF350 at 343.688 kb on - strand, within GFF350 at 343.695 kb on + strand, within GFF350 at 343.708 kb on + strand, within GFF350 at 343.735 kb on + strand, within GFF350 at 343.735 kb on + strand, within GFF350 at 343.743 kb on - strand, within GFF350 at 343.743 kb on - strand, within GFF350 at 343.817 kb on + strand, within GFF350 at 343.817 kb on + strand, within GFF350 at 343.825 kb on - strand, within GFF350 at 343.875 kb on + strand, within GFF350 at 343.883 kb on + strand, within GFF350 at 343.902 kb on + strand, within GFF350 at 343.976 kb on + strand, within GFF350 at 343.977 kb on + strand, within GFF350 at 343.984 kb on - strand, within GFF350 at 343.984 kb on - strand, within GFF350 at 344.005 kb on - strand, within GFF350 at 344.039 kb on + strand at 344.039 kb on + strand at 344.039 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.135 kb on + strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.143 kb on - strand at 344.188 kb on - strand, within GFF351 at 344.219 kb on + strand, within GFF351 at 344.221 kb on - strand, within GFF351 at 344.234 kb on + strand, within GFF351 at 344.255 kb on - strand, within GFF351 at 344.257 kb on - strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.291 kb on + strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.299 kb on - strand, within GFF351 at 344.304 kb on - strand, within GFF351 at 344.305 kb on + strand, within GFF351 at 344.323 kb on + strand, within GFF351 at 344.323 kb on + strand, within GFF351 at 344.323 kb on - strand, within GFF351 at 344.331 kb on - strand, within GFF351 at 344.331 kb on - strand, within GFF351 at 344.331 kb on - strand, within GFF351 at 344.336 kb on - strand, within GFF351 at 344.347 kb on + strand, within GFF351 at 344.372 kb on + strand, within GFF351 at 344.372 kb on + strand, within GFF351 at 344.372 kb on + strand, within GFF351 at 344.379 kb on - strand, within GFF351 at 344.415 kb on + strand, within GFF351 at 344.422 kb on - strand, within GFF351 at 344.439 kb on + strand, within GFF351 at 344.439 kb on + strand, within GFF351 at 344.449 kb on - strand, within GFF351 at 344.453 kb on - strand, within GFF351 at 344.467 kb on + strand, within GFF351 at 344.491 kb on - strand, within GFF351 at 344.492 kb on + strand, within GFF351 at 344.492 kb on + strand, within GFF351 at 344.492 kb on + strand, within GFF351 at 344.492 kb on + strand, within GFF351 at 344.495 kb on + strand, within GFF351 at 344.496 kb on + strand, within GFF351 at 344.516 kb on + strand, within GFF351 at 344.516 kb on + strand, within GFF351 at 344.516 kb on + strand, within GFF351 at 344.524 kb on - strand, within GFF351 at 344.524 kb on - strand, within GFF351 at 344.543 kb on - strand at 344.565 kb on + strand at 344.569 kb on - strand at 344.573 kb on - strand at 344.603 kb on - strand at 344.616 kb on - strand at 344.633 kb on + strand at 344.639 kb on + strand at 344.643 kb on + strand at 344.643 kb on + strand at 344.660 kb on - strand, within GFF352 at 344.660 kb on - strand, within GFF352 at 344.660 kb on - strand, within GFF352 at 344.666 kb on - strand, within GFF352 at 344.693 kb on + strand, within GFF352 at 344.700 kb on + strand, within GFF352 at 344.700 kb on + strand, within GFF352 at 344.700 kb on + strand, within GFF352 at 344.705 kb on + strand, within GFF352 at 344.708 kb on - strand, within GFF352 at 344.708 kb on - strand, within GFF352 at 344.709 kb on + strand, within GFF352 at 344.739 kb on + strand, within GFF352 at 344.747 kb on + strand, within GFF352 at 344.747 kb on + strand, within GFF352 at 344.747 kb on + strand, within GFF352 at 344.755 kb on - strand, within GFF352 at 344.791 kb on + strand, within GFF352 at 344.797 kb on - strand, within GFF352 at 344.799 kb on - strand, within GFF352 at 344.799 kb on - strand, within GFF352 at 344.809 kb on - strand, within GFF352 at 344.824 kb on + strand, within GFF352 at 344.825 kb on + strand, within GFF352 at 344.842 kb on + strand, within GFF352 at 344.849 kb on + strand, within GFF352 at 344.849 kb on + strand, within GFF352 at 344.849 kb on + strand, within GFF352 at 344.850 kb on - strand, within GFF352 at 344.876 kb on - strand, within GFF352 at 344.894 kb on + strand, within GFF352 at 344.912 kb on - strand, within GFF352 at 344.950 kb on - strand, within GFF352 at 344.960 kb on - strand, within GFF352 at 344.970 kb on + strand, within GFF352 at 344.970 kb on + strand, within GFF352 at 344.970 kb on + strand, within GFF352 at 344.970 kb on + strand, within GFF352 at 344.997 kb on + strand, within GFF352 at 345.017 kb on + strand, within GFF352 at 345.022 kb on + strand, within GFF352 at 345.025 kb on - strand, within GFF352 at 345.025 kb on - strand, within GFF352 at 345.025 kb on - strand, within GFF352 at 345.030 kb on - strand, within GFF352 at 345.030 kb on - strand, within GFF352 at 345.030 kb on - strand, within GFF352 at 345.045 kb on - strand, within GFF352 at 345.052 kb on - strand, within GFF352 at 345.053 kb on - strand, within GFF352 at 345.107 kb on - strand, within GFF352 at 345.107 kb on - strand, within GFF352 at 345.107 kb on - strand, within GFF352 at 345.107 kb on - strand, within GFF352
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 341,852 + GFF349 0.47 -1.3 341,860 - GFF349 0.48 +0.3 341,868 + GFF349 0.48 +1.2 341,910 - GFF349 0.51 +1.1 341,914 + GFF349 0.51 -0.8 341,924 + GFF349 0.51 -0.6 341,977 + GFF349 0.55 -0.7 342,039 - GFF349 0.58 -0.7 342,184 - GFF349 0.67 -0.7 342,199 - GFF349 0.68 -0.1 342,238 - GFF349 0.70 +0.5 342,247 + GFF349 0.71 -1.4 342,255 - GFF349 0.71 -0.6 342,255 - GFF349 0.71 +1.6 342,255 - GFF349 0.71 -0.4 342,262 + GFF349 0.72 -1.0 342,270 - GFF349 0.72 -0.7 342,301 - GFF349 0.74 +1.1 342,301 - GFF349 0.74 +0.6 342,329 - GFF349 0.76 +0.7 342,338 + GFF349 0.76 +0.8 342,376 - GFF349 0.78 +0.6 342,381 - GFF349 0.79 -0.5 342,421 + GFF349 0.81 -0.8 342,421 + GFF349 0.81 -0.6 342,429 - GFF349 0.82 -0.1 342,429 - GFF349 0.82 -0.9 342,438 + GFF349 0.82 +0.3 342,532 - GFF349 0.88 +0.2 342,540 - GFF349 0.88 -0.7 342,587 + +0.0 342,621 + -0.5 342,629 - -1.2 342,681 - -1.8 342,722 - -0.5 342,722 - +0.6 342,744 - -0.4 342,747 + +0.4 342,749 + -1.2 342,751 + +0.5 342,764 - +0.4 342,765 + -0.9 342,769 + +0.4 342,769 + +0.9 342,769 + +0.4 342,769 + +0.2 342,774 + -0.4 342,777 - +0.0 342,777 - -1.2 342,784 + -0.9 342,784 + -1.1 342,792 - -0.5 342,792 - +1.2 342,792 - -1.2 342,792 - -0.4 342,792 - -1.3 342,812 - -1.3 342,814 + +0.0 342,846 - -2.3 342,854 + -0.7 342,858 - -0.2 342,908 + -0.6 343,000 + GFF350 0.12 -0.9 343,010 + GFF350 0.13 +0.7 343,048 - GFF350 0.16 -0.3 343,124 - GFF350 0.22 -0.3 343,161 - GFF350 0.25 -0.4 343,227 - GFF350 0.30 -1.2 343,276 + GFF350 0.34 +0.7 343,297 + GFF350 0.35 -1.1 343,305 - GFF350 0.36 +0.6 343,338 - GFF350 0.38 -0.6 343,392 - GFF350 0.43 -0.8 343,427 + GFF350 0.45 +0.7 343,427 - GFF350 0.45 -0.3 343,435 - GFF350 0.46 +0.3 343,472 + GFF350 0.49 -0.3 343,480 - GFF350 0.49 -0.5 343,504 - GFF350 0.51 -0.4 343,558 - GFF350 0.55 -0.4 343,558 - GFF350 0.55 +0.6 343,590 - GFF350 0.58 -0.3 343,605 + GFF350 0.59 +0.5 343,627 + GFF350 0.61 -0.5 343,683 - GFF350 0.65 +0.4 343,685 + GFF350 0.65 -0.7 343,688 - GFF350 0.65 +0.5 343,695 + GFF350 0.66 -0.6 343,708 + GFF350 0.67 -0.5 343,735 + GFF350 0.69 -0.6 343,735 + GFF350 0.69 -0.5 343,743 - GFF350 0.70 -1.1 343,743 - GFF350 0.70 -0.4 343,817 + GFF350 0.75 -1.6 343,817 + GFF350 0.75 -1.2 343,825 - GFF350 0.76 -2.1 343,875 + GFF350 0.80 -1.1 343,883 + GFF350 0.80 -0.1 343,902 + GFF350 0.82 -0.9 343,976 + GFF350 0.88 -1.0 343,977 + GFF350 0.88 -1.0 343,984 - GFF350 0.88 -1.2 343,984 - GFF350 0.88 -0.5 344,005 - GFF350 0.90 -0.1 344,039 + -0.5 344,039 + -0.5 344,039 + +1.0 344,135 + -1.6 344,135 + -0.4 344,135 + +0.8 344,135 + -1.8 344,135 + -1.3 344,135 + -0.2 344,135 + -0.5 344,135 + -1.1 344,135 + +0.7 344,135 + -0.3 344,135 + -1.1 344,135 + -0.3 344,135 + -1.9 344,135 + -0.6 344,135 + -0.9 344,135 + -2.1 344,143 - -1.1 344,143 - -1.4 344,143 - -0.1 344,143 - -0.6 344,143 - -1.7 344,143 - -0.5 344,143 - -0.1 344,143 - -0.6 344,143 - +1.3 344,143 - +0.2 344,143 - +1.0 344,143 - +0.8 344,143 - -1.6 344,143 - -1.6 344,143 - -0.6 344,143 - -1.0 344,143 - -0.6 344,143 - -0.7 344,188 - GFF351 0.12 -2.1 344,219 + GFF351 0.19 -0.9 344,221 - GFF351 0.19 -1.0 344,234 + GFF351 0.22 +0.9 344,255 - GFF351 0.27 -1.1 344,257 - GFF351 0.27 -0.8 344,291 + GFF351 0.35 -0.3 344,291 + GFF351 0.35 -1.1 344,291 + GFF351 0.35 -0.3 344,291 + GFF351 0.35 -1.0 344,291 + GFF351 0.35 +0.3 344,291 + GFF351 0.35 +1.1 344,291 + GFF351 0.35 -1.1 344,291 + GFF351 0.35 -1.8 344,291 + GFF351 0.35 -0.6 344,291 + GFF351 0.35 -0.3 344,291 + GFF351 0.35 -0.4 344,291 + GFF351 0.35 -1.0 344,291 + GFF351 0.35 -2.2 344,291 + GFF351 0.35 -1.3 344,291 + GFF351 0.35 -2.1 344,291 + GFF351 0.35 +0.5 344,291 + GFF351 0.35 +1.5 344,291 + GFF351 0.35 -0.8 344,291 + GFF351 0.35 +0.3 344,299 - GFF351 0.37 -0.5 344,299 - GFF351 0.37 -0.7 344,299 - GFF351 0.37 -0.8 344,299 - GFF351 0.37 -0.1 344,299 - GFF351 0.37 +0.1 344,299 - GFF351 0.37 -1.6 344,299 - GFF351 0.37 -1.7 344,299 - GFF351 0.37 -0.8 344,299 - GFF351 0.37 -0.7 344,299 - GFF351 0.37 +0.7 344,299 - GFF351 0.37 -1.3 344,299 - GFF351 0.37 +0.3 344,299 - GFF351 0.37 -0.5 344,299 - GFF351 0.37 +0.6 344,299 - GFF351 0.37 +0.1 344,299 - GFF351 0.37 +0.7 344,299 - GFF351 0.37 -1.4 344,304 - GFF351 0.38 +0.2 344,305 + GFF351 0.38 -0.4 344,323 + GFF351 0.42 -1.1 344,323 + GFF351 0.42 +1.1 344,323 - GFF351 0.42 -0.6 344,331 - GFF351 0.44 +0.6 344,331 - GFF351 0.44 -1.1 344,331 - GFF351 0.44 -0.4 344,336 - GFF351 0.45 -0.3 344,347 + GFF351 0.48 -1.0 344,372 + GFF351 0.53 -0.5 344,372 + GFF351 0.53 -0.4 344,372 + GFF351 0.53 +1.1 344,379 - GFF351 0.55 -0.3 344,415 + GFF351 0.63 -1.1 344,422 - GFF351 0.65 -0.4 344,439 + GFF351 0.68 -0.3 344,439 + GFF351 0.68 +0.6 344,449 - GFF351 0.71 -0.4 344,453 - GFF351 0.72 -1.2 344,467 + GFF351 0.75 -0.6 344,491 - GFF351 0.80 -1.8 344,492 + GFF351 0.80 -0.8 344,492 + GFF351 0.80 -0.5 344,492 + GFF351 0.80 -0.6 344,492 + GFF351 0.80 -0.9 344,495 + GFF351 0.81 -0.3 344,496 + GFF351 0.81 -0.3 344,516 + GFF351 0.86 -0.5 344,516 + GFF351 0.86 -0.5 344,516 + GFF351 0.86 -1.2 344,524 - GFF351 0.88 +0.3 344,524 - GFF351 0.88 +0.4 344,543 - -1.2 344,565 + -0.9 344,569 - -1.6 344,573 - -1.1 344,603 - +0.7 344,616 - -1.0 344,633 + -0.1 344,639 + +0.0 344,643 + -0.7 344,643 + -0.6 344,660 - GFF352 0.11 +0.4 344,660 - GFF352 0.11 -0.8 344,660 - GFF352 0.11 -0.3 344,666 - GFF352 0.12 -1.6 344,693 + GFF352 0.17 -0.8 344,700 + GFF352 0.18 -0.1 344,700 + GFF352 0.18 -1.3 344,700 + GFF352 0.18 -0.4 344,705 + GFF352 0.19 -1.0 344,708 - GFF352 0.19 -0.1 344,708 - GFF352 0.19 -0.1 344,709 + GFF352 0.19 -0.5 344,739 + GFF352 0.24 -0.4 344,747 + GFF352 0.25 +0.3 344,747 + GFF352 0.25 -0.8 344,747 + GFF352 0.25 +0.7 344,755 - GFF352 0.26 +0.7 344,791 + GFF352 0.32 +0.8 344,797 - GFF352 0.33 -0.3 344,799 - GFF352 0.33 -0.6 344,799 - GFF352 0.33 -1.2 344,809 - GFF352 0.35 -0.8 344,824 + GFF352 0.37 +0.0 344,825 + GFF352 0.37 +0.5 344,842 + GFF352 0.40 +0.0 344,849 + GFF352 0.41 -1.3 344,849 + GFF352 0.41 +0.8 344,849 + GFF352 0.41 -1.5 344,850 - GFF352 0.41 -0.6 344,876 - GFF352 0.45 -0.1 344,894 + GFF352 0.48 -1.8 344,912 - GFF352 0.51 -0.6 344,950 - GFF352 0.57 -0.7 344,960 - GFF352 0.59 +0.5 344,970 + GFF352 0.60 +1.0 344,970 + GFF352 0.60 -1.1 344,970 + GFF352 0.60 -0.1 344,970 + GFF352 0.60 -0.9 344,997 + GFF352 0.64 +1.0 345,017 + GFF352 0.68 -0.4 345,022 + GFF352 0.68 +0.1 345,025 - GFF352 0.69 +0.3 345,025 - GFF352 0.69 -0.8 345,025 - GFF352 0.69 -3.8 345,030 - GFF352 0.70 -0.1 345,030 - GFF352 0.70 -0.7 345,030 - GFF352 0.70 -0.5 345,045 - GFF352 0.72 -1.1 345,052 - GFF352 0.73 -0.5 345,053 - GFF352 0.73 -1.1 345,107 - GFF352 0.82 -0.2 345,107 - GFF352 0.82 -0.9 345,107 - GFF352 0.82 -1.8 345,107 - GFF352 0.82 +0.5
Or see this region's nucleotide sequence