Strain Fitness in Sphingobium sp. HT1-2 around GFF341

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
331,934	+		GFF339	0.53	-1.3
331,935	-		GFF339	0.53	-1.1
331,944	+		GFF339	0.54	-1.6
331,957	+		GFF339	0.56	+0.1
331,957	+		GFF339	0.56	-1.1
331,967	-		GFF339	0.58	-0.5
331,980	+		GFF339	0.59	-0.4
331,980	+		GFF339	0.59	-1.7
331,980	+		GFF339	0.59	-0.2
331,983	-		GFF339	0.60	-1.0
331,985	+		GFF339	0.60	+0.9
331,988	-		GFF339	0.61	+0.2
331,988	-		GFF339	0.61	-0.5
331,988	-		GFF339	0.61	-1.3
331,988	-		GFF339	0.61	-0.7
332,099	-		GFF339	0.77	+0.6
332,117	+		GFF339	0.80	-1.5
332,145	+		GFF339	0.84	+0.4
332,151	+		GFF339	0.85	+0.4
332,151	+		GFF339	0.85	-0.5
332,151	+		GFF339	0.85	+0.2
332,152	+		GFF339	0.85	-1.7
332,153	-		GFF339	0.85	-0.4
332,159	-		GFF339	0.86	+0.6
332,159	-		GFF339	0.86	+0.4
332,160	-		GFF339	0.86	-0.8
332,160	-		GFF339	0.86	-0.7
332,169	+		GFF339	0.87	-1.9
332,179	+		GFF339	0.89	-0.6
332,229	+				-0.4
332,229	+				-1.0
332,229	+				+1.2
332,229	+				-0.1
332,229	+				-0.2
332,229	+				-1.7
332,229	+				+0.0
332,229	+				-0.5
332,237	-				-0.8
332,237	-				-2.1
332,237	-				-1.1
332,237	-				+0.2
332,282	+				-0.1
332,287	+				-1.5
332,287	+				-0.8
332,287	+				-1.1
332,287	+				-1.3
332,302	+				-0.8
332,302	+				-0.4
332,302	+				-0.7
332,310	-		GFF340	0.11	-0.9
332,310	-		GFF340	0.11	-0.5
332,310	-		GFF340	0.11	-0.4
332,310	-		GFF340	0.11	+0.4
332,344	-		GFF340	0.17	-0.4
332,344	-		GFF340	0.17	-0.6
332,367	+		GFF340	0.21	-1.1
332,390	+		GFF340	0.25	-1.7
332,403	+		GFF340	0.28	-0.6
332,408	-		GFF340	0.29	+0.2
332,451	+		GFF340	0.37	+0.8
332,451	+		GFF340	0.37	-0.5
332,459	-		GFF340	0.38	-1.1
332,459	-		GFF340	0.38	-0.6
332,459	-		GFF340	0.38	-0.1
332,478	-		GFF340	0.42	-0.4
332,500	+		GFF340	0.46	+0.3
332,513	-		GFF340	0.48	-0.7
332,557	+		GFF340	0.56	-1.1
332,607	+		GFF340	0.65	-1.8
332,607	+		GFF340	0.65	-0.6
332,607	+		GFF340	0.65	-0.7
332,607	+		GFF340	0.65	-1.3
332,607	+		GFF340	0.65	-1.2
332,607	+		GFF340	0.65	-1.6
332,607	+		GFF340	0.65	-1.0
332,607	+		GFF340	0.65	+1.0
332,607	+		GFF340	0.65	-0.4
332,607	+		GFF340	0.65	-0.6
332,607	+		GFF340	0.65	-1.3
332,607	+		GFF340	0.65	-1.2
332,612	+		GFF340	0.66	-0.9
332,615	-		GFF340	0.67	+0.3
332,615	-		GFF340	0.67	+0.7
332,615	-		GFF340	0.67	+0.7
332,615	-		GFF340	0.67	-2.0
332,615	-		GFF340	0.67	-1.5
332,615	-		GFF340	0.67	-0.8
332,620	-		GFF340	0.68	+0.7
332,625	+		GFF340	0.69	-1.3
332,625	+		GFF340	0.69	+0.7
332,625	-		GFF340	0.69	-0.8
332,625	-		GFF340	0.69	-1.3
332,633	-		GFF340	0.70	+0.2
332,633	-		GFF340	0.70	-0.2
332,635	+		GFF340	0.71	-0.1
332,635	+		GFF340	0.71	+1.2
332,635	+		GFF340	0.71	-0.1
332,635	+		GFF340	0.71	+0.1
332,639	-		GFF340	0.71	-1.7
332,643	-		GFF340	0.72	+1.7
332,643	-		GFF340	0.72	-0.6
332,643	-		GFF340	0.72	-1.9
332,667	+		GFF340	0.76	-0.3
332,703	-		GFF340	0.83	-0.9
332,706	+		GFF340	0.84	-0.2
332,714	-		GFF340	0.85	-0.5
332,714	-		GFF340	0.85	-1.3
332,735	-		GFF340	0.89	+0.7
332,735	-		GFF340	0.89	-0.5
332,735	-		GFF340	0.89	+0.2
332,737	+		GFF340	0.89	-0.4
332,737	+		GFF340	0.89	-1.0
332,737	+		GFF340	0.89	+0.2
332,737	+		GFF340	0.89	-1.2
332,740	-				-0.4
332,751	+				-0.9
332,769	-				+1.5
332,773	-				-1.1
332,775	+				-0.8
332,775	+				+0.4
332,775	+				+0.3
332,775	+				-0.6
332,775	+				-1.1
332,778	-				-0.8
332,780	+				+0.9
332,782	+				-1.3
332,783	-				+0.2
332,783	-				-1.1
332,783	-				+0.7
332,783	-				+0.7
332,783	-				-0.7
332,783	-				-0.9
332,788	-				+0.1
332,795	+				-0.9
332,818	+				+0.5
332,826	-				-2.2
332,826	-				-0.6
332,828	+				-0.8
332,828	+				+1.1
332,834	+				+0.7
332,834	+				-1.5
332,854	+				-0.1
332,860	-				-3.0
332,876	+				-0.9
332,883	+				+0.3
332,884	-				+1.1
332,889	+				+0.3
332,901	+				+0.1
332,909	-				+0.2
332,915	+				-1.9
332,915	+				-1.2
332,919	-				-0.2
332,919	-				-0.7
332,919	-				+0.5
332,922	-				-0.8
332,922	-				-0.3
332,923	-				-1.0
332,934	-				-0.6
332,943	+				-2.2
332,943	+				+0.9
332,944	-				-0.3
332,948	+				+0.7
332,953	+				-2.0
332,987	+		GFF341	0.15	-0.5
332,988	+		GFF341	0.15	+0.0
332,988	+		GFF341	0.15	-1.7
332,993	+		GFF341	0.16	-0.4
332,995	-		GFF341	0.17	-0.3
332,996	-		GFF341	0.17	+0.4
333,014	+		GFF341	0.21	-1.3
333,014	+		GFF341	0.21	-0.5
333,014	+		GFF341	0.21	-0.2
333,022	-		GFF341	0.23	+0.9
333,022	-		GFF341	0.23	-0.8
333,022	-		GFF341	0.23	-0.3
333,027	+		GFF341	0.24	+1.5
333,050	-		GFF341	0.29	-0.5
333,059	-		GFF341	0.31	-0.3
333,061	+		GFF341	0.31	+0.5
333,061	+		GFF341	0.31	-0.5
333,069	-		GFF341	0.33	-0.1
333,069	-		GFF341	0.33	-0.5
333,069	-		GFF341	0.33	-1.6
333,082	+		GFF341	0.36	-1.2
333,087	+		GFF341	0.37	-0.7
333,087	+		GFF341	0.37	-1.2
333,087	+		GFF341	0.37	-0.2
333,087	+		GFF341	0.37	-0.8
333,095	-		GFF341	0.39	-0.9
333,095	-		GFF341	0.39	-0.6
333,127	+		GFF341	0.46	-0.8
333,127	+		GFF341	0.46	-0.3
333,127	+		GFF341	0.46	-1.7
333,127	+		GFF341	0.46	+0.3
333,139	+		GFF341	0.48	-1.4
333,139	+		GFF341	0.48	+0.3
333,161	+		GFF341	0.53	-0.7
333,186	+		GFF341	0.58	+0.0
333,205	+		GFF341	0.63	+0.1
333,205	+		GFF341	0.63	+0.3
333,212	-		GFF341	0.64	+0.2
333,227	+		GFF341	0.67	+1.1
333,233	+		GFF341	0.69	-1.8
333,235	-		GFF341	0.69	+0.0
333,235	-		GFF341	0.69	-0.7
333,248	+		GFF341	0.72	-1.5
333,251	-		GFF341	0.73	+0.3
333,258	-		GFF341	0.74	-1.1
333,276	-		GFF341	0.78	-0.6
333,276	-		GFF341	0.78	+0.4
333,311	+		GFF341	0.86	-0.9
333,313	+		GFF341	0.86	-0.8
333,321	+		GFF341	0.88	-0.7
333,392	-				-0.1
333,394	+				-1.3
333,395	+				+0.6
333,396	+				+0.3
333,402	-				-1.5
333,402	-				-0.4
333,404	+				-0.1
333,404	+				-1.1
333,404	+				-1.4
333,412	-				+0.5
333,412	-				-0.4
333,418	-				-1.6
333,423	-				-0.5
333,474	+				-0.2
333,474	+				+0.7
333,482	-				-0.7
333,488	+				+0.9
333,491	-				-0.7
333,506	+				+1.5
333,508	-				-0.6
333,508	-				-0.8
333,514	-				-0.4
333,521	-				-0.2
333,528	-				-0.1
333,528	-				+0.5
333,528	-				-1.0
333,529	+				+0.0
333,534	+		GFF342	0.10	-2.2
333,534	+		GFF342	0.10	+0.4
333,534	+		GFF342	0.10	-0.7
333,534	+		GFF342	0.10	-0.5
333,534	+		GFF342	0.10	+0.5
333,539	+		GFF342	0.11	-0.4
333,539	+		GFF342	0.11	-1.3
333,539	+		GFF342	0.11	+0.1
333,539	+		GFF342	0.11	-1.1
333,539	+		GFF342	0.11	-1.4
333,542	-		GFF342	0.12	-1.7
333,542	-		GFF342	0.12	-0.5
333,542	-		GFF342	0.12	-0.9
333,542	-		GFF342	0.12	-0.7
333,547	-		GFF342	0.12	-0.3
333,552	-		GFF342	0.13	-1.0
333,561	+		GFF342	0.15	+0.8
333,561	+		GFF342	0.15	-0.1
333,561	+		GFF342	0.15	+0.6
333,561	+		GFF342	0.15	+0.7
333,564	-		GFF342	0.15	+0.0
333,569	-		GFF342	0.16	-2.1
333,569	-		GFF342	0.16	-2.0
333,586	-		GFF342	0.19	-0.7
333,612	+		GFF342	0.24	-1.3
333,634	+		GFF342	0.28	-1.6
333,649	+		GFF342	0.30	-0.4
333,649	+		GFF342	0.30	-0.9
333,652	-		GFF342	0.31	-0.3
333,657	-		GFF342	0.32	-0.6
333,657	-		GFF342	0.32	-1.5
333,657	-		GFF342	0.32	-0.4
333,657	-		GFF342	0.32	-0.3
333,666	-		GFF342	0.34	+1.2
333,667	+		GFF342	0.34	+0.2
333,667	+		GFF342	0.34	-1.6
333,691	+		GFF342	0.38	+0.7
333,691	+		GFF342	0.38	-0.9
333,691	+		GFF342	0.38	+0.4
333,691	+		GFF342	0.38	-1.6
333,694	-		GFF342	0.38	+1.3
333,696	+		GFF342	0.39	-0.5
333,699	-		GFF342	0.39	+0.8
333,701	+		GFF342	0.40	+0.2
333,701	+		GFF342	0.40	+0.8
333,704	-		GFF342	0.40	-1.7
333,709	-		GFF342	0.41	-0.3
333,714	-		GFF342	0.42	-2.4
333,735	+		GFF342	0.46	-1.8
333,736	-		GFF342	0.46	-0.1
333,740	+		GFF342	0.47	+1.8
333,767	+		GFF342	0.51	+0.2
333,781	-		GFF342	0.54	-1.0
333,789	+		GFF342	0.55	+0.4
333,791	+		GFF342	0.56	-0.1
333,825	+		GFF342	0.62	-0.8
333,837	-		GFF342	0.64	-2.2
333,864	+		GFF342	0.69	+0.2
333,864	+		GFF342	0.69	+0.2
333,872	-		GFF342	0.70	-0.1
333,872	-		GFF342	0.70	+0.4
333,872	-		GFF342	0.70	+0.6
333,872	-		GFF342	0.70	-1.5
333,944	+		GFF342	0.83	+0.6
333,952	-		GFF342	0.84	-1.5
333,964	+		GFF342	0.86	-0.3
333,983	+		GFF342	0.90	-0.8
333,983	+		GFF342	0.90	-1.3
333,984	+				-0.9
333,989	+				-0.0
333,991	-				+1.2
333,997	-				-0.4
333,998	+				+1.5
333,999	+				-0.5
333,999	+				+0.1
333,999	+				-0.7
334,007	-				-1.5
334,007	-				-0.7
334,007	-				-0.6
334,009	-				+0.7
334,017	+				-0.1
334,052	+				+0.8
334,060	-				-0.1
334,066	-				-2.0
334,067	-				-0.6
334,082	+				+1.3
334,083	-				-1.2
334,090	-				-0.4
334,090	-				-0.3
334,092	+				+1.1
334,093	+				-0.1
334,094	+				-0.4
334,102	-				-2.1
334,102	-				+0.1
334,119	-				+0.2
334,125	-				+0.0
334,136	-				-0.6
334,137	+				-0.9
334,178	+				+0.4
334,196	-				+0.9
334,198	+				-0.4
334,206	-				-0.9
334,208	-				-0.5
334,278	-		GFF343	0.15	+0.2
334,302	+		GFF343	0.17	+1.2
334,318	-		GFF343	0.19	-2.1
334,319	-		GFF343	0.19	+0.2
334,371	+		GFF343	0.23	+0.0
334,371	+		GFF343	0.23	-0.3
334,371	-		GFF343	0.23	-0.3
334,373	+		GFF343	0.24	-0.2