Strain Fitness in Sphingobium sp. HT1-2 around GFF3360

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,409,138	-		GFF3358	0.82	+0.2
3,409,146	-		GFF3358	0.83	-0.3
3,409,149	+		GFF3358	0.84	-0.1
3,409,213	-				+0.5
3,409,223	-				+0.3
3,409,228	-				-1.0
3,409,228	-				-0.2
3,409,234	-				-0.8
3,409,234	-				-1.0
3,409,234	-				-0.6
3,409,252	+				-0.3
3,409,257	+				+0.3
3,409,257	+				-1.0
3,409,265	+				-1.3
3,409,265	-				-0.3
3,409,265	-				+0.0
3,409,265	-				+0.3
3,409,265	-				-2.0
3,409,267	+				+1.1
3,409,275	-				-0.3
3,409,283	-				+0.4
3,409,290	+				-1.0
3,409,295	+				-1.0
3,409,298	-				-1.7
3,409,303	-				-1.0
3,409,303	-				+1.2
3,409,315	+				-1.8
3,409,320	-				+0.4
3,409,361	-		GFF3359	0.12	-1.9
3,409,367	-		GFF3359	0.13	-0.5
3,409,381	+		GFF3359	0.15	-1.3
3,409,389	-		GFF3359	0.16	-0.0
3,409,391	-		GFF3359	0.16	+1.1
3,409,395	+		GFF3359	0.16	-0.9
3,409,395	+		GFF3359	0.16	-1.5
3,409,396	-		GFF3359	0.16	+0.9
3,409,403	-		GFF3359	0.17	-1.1
3,409,403	-		GFF3359	0.17	-1.6
3,409,453	-		GFF3359	0.23	-0.3
3,409,468	-		GFF3359	0.25	+1.8
3,409,473	-		GFF3359	0.25	-0.6
3,409,493	+		GFF3359	0.28	-1.9
3,409,493	+		GFF3359	0.28	-1.7
3,409,498	+		GFF3359	0.28	-2.5
3,409,498	+		GFF3359	0.28	-1.1
3,409,501	-		GFF3359	0.29	-0.8
3,409,514	+		GFF3359	0.30	-1.3
3,409,514	+		GFF3359	0.30	-0.7
3,409,522	-		GFF3359	0.31	-1.9
3,409,529	-		GFF3359	0.32	-1.2
3,409,541	+		GFF3359	0.33	-0.3
3,409,541	+		GFF3359	0.33	-0.8
3,409,541	+		GFF3359	0.33	-0.6
3,409,546	+		GFF3359	0.34	-2.3
3,409,549	-		GFF3359	0.34	+0.3
3,409,549	-		GFF3359	0.34	-0.3
3,409,557	+		GFF3359	0.35	-0.8
3,409,562	+		GFF3359	0.36	-1.8
3,409,565	-		GFF3359	0.36	-1.5
3,409,570	-		GFF3359	0.36	-0.5
3,409,583	-		GFF3359	0.38	-0.9
3,409,606	+		GFF3359	0.41	-0.5
3,409,654	+		GFF3359	0.46	-0.9
3,409,654	+		GFF3359	0.46	+0.6
3,409,656	-		GFF3359	0.46	-0.6
3,409,661	+		GFF3359	0.47	-1.6
3,409,662	-		GFF3359	0.47	-0.3
3,409,662	-		GFF3359	0.47	-1.5
3,409,662	-		GFF3359	0.47	-1.1
3,409,662	-		GFF3359	0.47	-0.3
3,409,669	-		GFF3359	0.48	-0.8
3,409,671	-		GFF3359	0.48	-1.5
3,409,682	+		GFF3359	0.49	-1.2
3,409,695	-		GFF3359	0.51	-1.8
3,409,695	-		GFF3359	0.51	-1.5
3,409,705	+		GFF3359	0.52	-1.7
3,409,705	+		GFF3359	0.52	-0.8
3,409,710	+		GFF3359	0.53	-0.1
3,409,710	+		GFF3359	0.53	-0.3
3,409,717	+		GFF3359	0.53	+0.1
3,409,718	-		GFF3359	0.53	-0.5
3,409,762	+		GFF3359	0.59	-0.6
3,409,762	+		GFF3359	0.59	-1.2
3,409,762	+		GFF3359	0.59	+0.2
3,409,785	+		GFF3359	0.61	+0.0
3,409,798	+		GFF3359	0.63	-0.5
3,409,806	-		GFF3359	0.64	+1.3
3,409,837	+		GFF3359	0.67	-1.1
3,409,837	+		GFF3359	0.67	-0.2
3,409,837	+		GFF3359	0.67	-0.9
3,409,837	+		GFF3359	0.67	-0.9
3,409,837	+		GFF3359	0.67	-1.4
3,409,837	+		GFF3359	0.67	-0.3
3,409,837	+		GFF3359	0.67	-0.8
3,409,845	-		GFF3359	0.68	+1.0
3,409,845	-		GFF3359	0.68	-0.7
3,409,845	-		GFF3359	0.68	+1.0
3,409,845	-		GFF3359	0.68	-1.9
3,409,845	-		GFF3359	0.68	+1.7
3,409,846	+		GFF3359	0.68	+1.1
3,409,846	+		GFF3359	0.68	+0.2
3,409,854	-		GFF3359	0.69	-1.0
3,409,854	-		GFF3359	0.69	-1.0
3,409,883	-		GFF3359	0.72	+0.5
3,409,885	+		GFF3359	0.73	-1.3
3,409,900	+		GFF3359	0.74	+0.3
3,409,908	-		GFF3359	0.75	-0.2
3,409,908	-		GFF3359	0.75	+0.0
3,409,916	+		GFF3359	0.76	-0.4
3,409,919	-		GFF3359	0.77	+0.7
3,409,935	+		GFF3359	0.78	-0.6
3,409,940	+		GFF3359	0.79	+0.2
3,409,944	-		GFF3359	0.79	-0.8
3,409,984	+		GFF3359	0.84	-0.0
3,409,984	+		GFF3359	0.84	-0.8
3,409,987	-		GFF3359	0.84	-0.3
3,409,987	-		GFF3359	0.84	+0.6
3,410,021	-		GFF3359	0.88	-0.7
3,410,030	+		GFF3359	0.89	-0.5
3,410,058	+				-1.1
3,410,066	-				-1.4
3,410,071	-				+0.5
3,410,085	+				+0.1
3,410,109	+				-1.9
3,410,111	+				-1.0
3,410,153	+				-1.1
3,410,163	-				-0.6
3,410,180	-		GFF3360	0.13	-1.2
3,410,191	-		GFF3360	0.15	-0.3
3,410,218	+		GFF3360	0.21	-1.6
3,410,218	+		GFF3360	0.21	+0.1
3,410,218	+		GFF3360	0.21	+0.5
3,410,222	+		GFF3360	0.21	-0.4
3,410,226	-		GFF3360	0.22	+0.8
3,410,226	-		GFF3360	0.22	+0.2
3,410,230	-		GFF3360	0.23	+0.1
3,410,241	-		GFF3360	0.25	-0.9
3,410,246	+		GFF3360	0.26	-1.5
3,410,246	+		GFF3360	0.26	+1.3
3,410,256	-		GFF3360	0.29	-0.0
3,410,264	-		GFF3360	0.30	-0.3
3,410,274	+		GFF3360	0.32	-2.5
3,410,293	+		GFF3360	0.36	-1.5
3,410,293	+		GFF3360	0.36	-0.6
3,410,293	+		GFF3360	0.36	+0.2
3,410,298	+		GFF3360	0.37	-0.8
3,410,298	+		GFF3360	0.37	+1.5
3,410,301	-		GFF3360	0.38	-1.3
3,410,301	-		GFF3360	0.38	+0.0
3,410,301	-		GFF3360	0.38	-0.3
3,410,301	-		GFF3360	0.38	-1.2
3,410,306	-		GFF3360	0.39	-0.8
3,410,306	-		GFF3360	0.39	-2.2
3,410,306	-		GFF3360	0.39	+0.5
3,410,310	-		GFF3360	0.40	+1.1
3,410,311	-		GFF3360	0.40	-0.6
3,410,311	-		GFF3360	0.40	+1.4
3,410,326	+		GFF3360	0.43	-1.6
3,410,330	+		GFF3360	0.44	-0.7
3,410,335	+		GFF3360	0.45	+0.4
3,410,335	+		GFF3360	0.45	-0.7
3,410,347	+		GFF3360	0.47	-1.6
3,410,348	-		GFF3360	0.48	-0.0
3,410,349	+		GFF3360	0.48	-1.4
3,410,353	+		GFF3360	0.49	+0.9
3,410,355	-		GFF3360	0.49	-2.0
3,410,358	+		GFF3360	0.50	-1.6
3,410,366	-		GFF3360	0.51	+0.4
3,410,376	+		GFF3360	0.54	-0.9
3,410,381	+		GFF3360	0.55	-1.1
3,410,387	-		GFF3360	0.56	+0.3
3,410,387	-		GFF3360	0.56	+0.0
3,410,389	-		GFF3360	0.56	+0.1
3,410,395	+		GFF3360	0.57	+0.4
3,410,395	-		GFF3360	0.57	+0.0
3,410,402	+		GFF3360	0.59	-1.3
3,410,405	-		GFF3360	0.60	-0.5
3,410,408	+		GFF3360	0.60	-0.3
3,410,413	+		GFF3360	0.61	+0.4
3,410,445	+		GFF3360	0.68	-0.8
3,410,461	-		GFF3360	0.71	+0.6
3,410,477	+		GFF3360	0.75	-1.6
3,410,478	+		GFF3360	0.75	-1.5
3,410,504	+		GFF3360	0.80	-1.4
3,410,510	-		GFF3360	0.81	-1.5
3,410,511	-		GFF3360	0.82	-0.8
3,410,511	-		GFF3360	0.82	-1.3
3,410,521	+		GFF3360	0.84	+0.0
3,410,521	+		GFF3360	0.84	+1.7
3,410,524	-		GFF3360	0.84	-0.3
3,410,529	-		GFF3360	0.85	-0.3
3,410,540	+		GFF3360	0.88	-0.3
3,410,548	+		GFF3360	0.89	+0.3
3,410,556	-				-0.6
3,410,583	+				-1.4
3,410,583	+				-0.4
3,410,584	-				-0.8
3,410,621	+				-1.8
3,410,648	-				-0.6
3,410,652	+				-0.7
3,410,660	-				+0.2
3,410,662	-				-1.5
3,410,664	+				+0.0
3,410,695	+				-0.8
3,410,695	+				-0.5
3,410,703	-				+0.5
3,410,703	-				-1.3
3,410,712	+				+1.1
3,410,723	-				-1.4
3,410,724	+				-0.5
3,410,729	+				-0.2
3,410,745	-				+0.0
3,410,774	-				-0.5
3,410,808	+				-1.5
3,410,808	+				+0.2
3,410,808	+				-1.2
3,410,808	+				-1.2
3,410,808	+				-0.3
3,410,808	+				-1.0
3,410,808	+				-0.3
3,410,808	+				+0.6
3,410,808	+				-0.5
3,410,808	+				+0.5
3,410,813	+				+0.9
3,410,816	-				+0.8
3,410,816	-				-1.5
3,410,816	-				-0.0
3,410,816	-				+0.7
3,410,816	-				-0.2
3,410,816	-				+0.5
3,410,816	-				+1.1
3,410,816	-				-0.5
3,410,816	-				+0.0
3,410,816	-				+0.6
3,410,816	-				+0.2
3,410,816	-				-1.1
3,410,816	-				-1.3
3,410,816	-				+0.7
3,410,816	-				-0.9
3,410,816	-				-0.7
3,410,816	-				-0.9
3,410,834	+				-0.8
3,410,847	+				+0.3
3,410,847	+				-0.9
3,410,855	-				+0.1
3,410,855	-				+1.6
3,410,860	+		GFF3361	0.10	-1.3
3,410,868	-		GFF3361	0.10	+0.0
3,410,874	-		GFF3361	0.11	-1.3
3,410,874	-		GFF3361	0.11	-1.6
3,410,914	+		GFF3361	0.12	-0.4
3,410,936	+		GFF3361	0.13	-0.5
3,410,939	+		GFF3361	0.13	+1.4
3,410,977	+		GFF3361	0.14	-0.3
3,410,979	-		GFF3361	0.15	-0.3
3,410,985	-		GFF3361	0.15	-0.6
3,410,985	-		GFF3361	0.15	+0.3
3,411,018	+		GFF3361	0.16	-1.1
3,411,018	+		GFF3361	0.16	-0.8
3,411,031	-		GFF3361	0.17	-0.5
3,411,042	-		GFF3361	0.17	-1.3
3,411,048	-		GFF3361	0.17	+0.0
3,411,048	-		GFF3361	0.17	-1.7
3,411,048	-		GFF3361	0.17	+1.4
3,411,048	-		GFF3361	0.17	-0.3
3,411,048	-		GFF3361	0.17	-1.7
3,411,061	-		GFF3361	0.18	-0.0
3,411,068	+		GFF3361	0.18	+0.5
3,411,078	+		GFF3361	0.18	-0.4
3,411,093	+		GFF3361	0.19	-1.0
3,411,100	-		GFF3361	0.19	-1.3
3,411,117	+		GFF3361	0.20	-0.7
3,411,130	-		GFF3361	0.20	+1.2
3,411,175	-		GFF3361	0.22	-0.6
3,411,204	+		GFF3361	0.23	+0.4
3,411,213	-		GFF3361	0.23	-0.3
3,411,237	+		GFF3361	0.24	-0.8
3,411,237	+		GFF3361	0.24	-0.8
3,411,240	+		GFF3361	0.24	-0.9
3,411,245	-		GFF3361	0.25	-0.2
3,411,250	+		GFF3361	0.25	-0.9
3,411,264	-		GFF3361	0.25	-1.2
3,411,277	+		GFF3361	0.26	-2.4
3,411,288	+		GFF3361	0.26	-0.1
3,411,298	+		GFF3361	0.27	-0.5
3,411,298	+		GFF3361	0.27	+0.7
3,411,306	-		GFF3361	0.27	+0.7
3,411,306	-		GFF3361	0.27	-0.0
3,411,311	-		GFF3361	0.27	-0.5
3,411,312	+		GFF3361	0.27	-0.4
3,411,330	+		GFF3361	0.28	-1.5
3,411,343	+		GFF3361	0.28	-0.5
3,411,351	-		GFF3361	0.29	+1.8
3,411,372	+		GFF3361	0.29	-1.2
3,411,372	+		GFF3361	0.29	-0.3
3,411,372	+		GFF3361	0.29	-0.8
3,411,375	-		GFF3361	0.30	+0.6
3,411,377	+		GFF3361	0.30	-0.9
3,411,378	+		GFF3361	0.30	+0.8
3,411,385	-		GFF3361	0.30	-0.5
3,411,390	-		GFF3361	0.30	-0.9
3,411,407	+		GFF3361	0.31	-0.1
3,411,454	+		GFF3361	0.33	-1.0
3,411,454	+		GFF3361	0.33	+2.0
3,411,454	+		GFF3361	0.33	+0.0
3,411,462	-		GFF3361	0.33	+0.4
3,411,462	-		GFF3361	0.33	-0.8
3,411,467	-		GFF3361	0.33	+0.1
3,411,476	+		GFF3361	0.33	-1.1
3,411,476	+		GFF3361	0.33	+0.1
3,411,476	+		GFF3361	0.33	-0.6
3,411,476	+		GFF3361	0.33	-1.0
3,411,478	+		GFF3361	0.33	-0.4
3,411,484	-		GFF3361	0.34	-1.0
3,411,503	-		GFF3361	0.34	-0.9
3,411,508	-		GFF3361	0.35	+0.9
3,411,575	+		GFF3361	0.37	+0.2
3,411,583	-		GFF3361	0.37	-0.7
3,411,586	-		GFF3361	0.38	-1.5
3,411,588	+		GFF3361	0.38	-1.9
3,411,588	+		GFF3361	0.38	-0.6
3,411,596	-		GFF3361	0.38	+0.1