Strain Fitness in Sphingobium sp. HT1-2 around GFF3359

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,408,327	-		GFF3357	0.88	-0.9
3,408,349	+		GFF3357	0.89	-1.3
3,408,351	+		GFF3357	0.89	+0.1
3,408,389	+				-1.6
3,408,389	+				-1.5
3,408,399	+				-1.8
3,408,430	+				+0.8
3,408,438	-				-0.4
3,408,475	-				-0.8
3,408,549	+				-0.6
3,408,611	-				-1.6
3,408,628	-				+1.3
3,408,636	-				+0.7
3,408,689	+		GFF3358	0.15	+1.0
3,408,732	+		GFF3358	0.22	-0.0
3,408,744	-		GFF3358	0.24	-0.0
3,408,769	+		GFF3358	0.27	-0.3
3,408,769	+		GFF3358	0.27	+0.6
3,408,769	+		GFF3358	0.27	-0.7
3,408,777	-		GFF3358	0.29	-0.3
3,408,777	-		GFF3358	0.29	-0.4
3,408,777	-		GFF3358	0.29	-1.0
3,408,779	+		GFF3358	0.29	-1.5
3,408,783	-		GFF3358	0.29	-0.6
3,408,817	+		GFF3358	0.35	-1.8
3,408,825	-		GFF3358	0.36	-0.8
3,408,827	+		GFF3358	0.36	+2.4
3,408,849	-		GFF3358	0.39	-0.5
3,408,854	-		GFF3358	0.40	+0.3
3,408,854	-		GFF3358	0.40	-1.2
3,408,854	-		GFF3358	0.40	+0.4
3,408,864	-		GFF3358	0.42	-1.2
3,408,894	+		GFF3358	0.46	-0.7
3,408,894	+		GFF3358	0.46	-1.3
3,408,894	+		GFF3358	0.46	-0.4
3,408,894	+		GFF3358	0.46	-0.5
3,408,896	+		GFF3358	0.46	-0.5
3,408,899	+		GFF3358	0.47	-0.9
3,408,899	+		GFF3358	0.47	-0.5
3,408,902	-		GFF3358	0.47	+1.4
3,408,902	-		GFF3358	0.47	+0.0
3,408,907	-		GFF3358	0.48	+2.8
3,408,907	-		GFF3358	0.48	-1.4
3,408,907	-		GFF3358	0.48	-0.6
3,408,907	-		GFF3358	0.48	+0.5
3,408,907	-		GFF3358	0.48	-0.5
3,408,907	-		GFF3358	0.48	+0.0
3,409,021	+		GFF3358	0.65	-1.9
3,409,071	+		GFF3358	0.72	-1.7
3,409,071	+		GFF3358	0.72	-1.0
3,409,084	-		GFF3358	0.74	-1.3
3,409,084	-		GFF3358	0.74	-1.8
3,409,084	-		GFF3358	0.74	-1.3
3,409,107	+		GFF3358	0.78	-0.8
3,409,107	+		GFF3358	0.78	+1.0
3,409,149	+		GFF3358	0.84	+0.1
3,409,213	-				+0.7
3,409,223	-				+0.6
3,409,228	-				-0.7
3,409,257	+				+0.5
3,409,265	-				-0.1
3,409,265	-				+0.6
3,409,265	-				-1.7
3,409,275	-				-0.1
3,409,298	-				-1.5
3,409,303	-				-0.8
3,409,315	+				-1.6
3,409,381	+		GFF3359	0.15	-1.0
3,409,389	-		GFF3359	0.16	+0.2
3,409,391	-		GFF3359	0.16	+1.4
3,409,453	-		GFF3359	0.23	-0.0
3,409,473	-		GFF3359	0.25	-0.3
3,409,493	+		GFF3359	0.28	-1.6
3,409,493	+		GFF3359	0.28	-1.4
3,409,498	+		GFF3359	0.28	-2.3
3,409,498	+		GFF3359	0.28	+3.8
3,409,498	+		GFF3359	0.28	-0.8
3,409,514	+		GFF3359	0.30	-1.0
3,409,522	-		GFF3359	0.31	-1.6
3,409,541	+		GFF3359	0.33	-0.5
3,409,546	+		GFF3359	0.34	-2.0
3,409,549	-		GFF3359	0.34	-0.1
3,409,557	+		GFF3359	0.35	-0.6
3,409,656	-		GFF3359	0.46	-0.3
3,409,662	-		GFF3359	0.47	-1.2
3,409,695	-		GFF3359	0.51	-1.3
3,409,698	+		GFF3359	0.51	+1.6
3,409,705	+		GFF3359	0.52	-1.5
3,409,710	+		GFF3359	0.53	+0.1
3,409,717	+		GFF3359	0.53	+0.4
3,409,762	+		GFF3359	0.59	-0.9
3,409,762	+		GFF3359	0.59	+0.5
3,409,785	+		GFF3359	0.61	+0.3
3,409,806	-		GFF3359	0.64	+1.5
3,409,806	-		GFF3359	0.64	+0.1
3,409,837	+		GFF3359	0.67	-0.9
3,409,837	+		GFF3359	0.67	+1.4
3,409,837	+		GFF3359	0.67	-0.7
3,409,837	+		GFF3359	0.67	-0.1
3,409,837	+		GFF3359	0.67	-0.6
3,409,837	+		GFF3359	0.67	-1.1
3,409,837	+		GFF3359	0.67	-0.0
3,409,837	+		GFF3359	0.67	+1.4
3,409,845	-		GFF3359	0.68	-0.4
3,409,845	-		GFF3359	0.68	+1.2
3,409,845	-		GFF3359	0.68	+2.0
3,409,845	-		GFF3359	0.68	+1.8
3,409,846	+		GFF3359	0.68	+1.4
3,409,846	+		GFF3359	0.68	+0.4
3,409,854	-		GFF3359	0.69	-0.7
3,409,854	-		GFF3359	0.69	-0.6
3,409,908	-		GFF3359	0.75	+0.1
3,409,908	-		GFF3359	0.75	+0.3
3,409,916	+		GFF3359	0.76	-0.1
3,409,919	-		GFF3359	0.77	+1.0
3,409,944	-		GFF3359	0.79	-0.6
3,409,987	-		GFF3359	0.84	+0.9
3,410,085	+				+0.4
3,410,103	+				-1.1
3,410,111	+				-0.8
3,410,153	+				-0.9
3,410,180	-		GFF3360	0.13	-0.9
3,410,183	+		GFF3360	0.13	+1.4
3,410,191	-		GFF3360	0.15	-0.0
3,410,218	+		GFF3360	0.21	+0.3
3,410,222	+		GFF3360	0.21	-0.2
3,410,226	-		GFF3360	0.22	+0.4
3,410,246	+		GFF3360	0.26	-1.3
3,410,254	-		GFF3360	0.28	+0.2
3,410,256	-		GFF3360	0.29	+0.2
3,410,264	-		GFF3360	0.30	-0.1
3,410,274	+		GFF3360	0.32	-2.3
3,410,293	+		GFF3360	0.36	-1.2
3,410,293	+		GFF3360	0.36	+0.8
3,410,293	+		GFF3360	0.36	+0.5
3,410,298	+		GFF3360	0.37	+1.8
3,410,301	-		GFF3360	0.38	+0.3
3,410,302	+		GFF3360	0.38	+2.4
3,410,306	-		GFF3360	0.39	-0.5
3,410,306	-		GFF3360	0.39	-1.9
3,410,306	-		GFF3360	0.39	+0.1
3,410,306	-		GFF3360	0.39	+0.7
3,410,310	-		GFF3360	0.40	+1.4
3,410,311	-		GFF3360	0.40	-0.4
3,410,311	-		GFF3360	0.40	+1.6
3,410,330	+		GFF3360	0.44	-0.4
3,410,335	+		GFF3360	0.45	+0.7
3,410,335	+		GFF3360	0.45	-0.4
3,410,338	-		GFF3360	0.46	+1.1
3,410,348	-		GFF3360	0.48	+0.2
3,410,349	+		GFF3360	0.48	-1.1
3,410,353	+		GFF3360	0.49	+1.1
3,410,358	+		GFF3360	0.50	-1.3
3,410,376	+		GFF3360	0.54	-0.6
3,410,381	+		GFF3360	0.55	-0.9
3,410,387	-		GFF3360	0.56	+0.6
3,410,387	-		GFF3360	0.56	+0.3
3,410,389	-		GFF3360	0.56	+0.4
3,410,395	+		GFF3360	0.57	+0.7
3,410,395	-		GFF3360	0.57	+0.3
3,410,402	+		GFF3360	0.59	-1.1
3,410,408	+		GFF3360	0.60	-0.1
3,410,461	-		GFF3360	0.71	+0.9
3,410,478	+		GFF3360	0.75	-1.3
3,410,511	-		GFF3360	0.82	-0.5
3,410,521	+		GFF3360	0.84	+0.3
3,410,556	-				-0.3
3,410,583	+				-0.1
3,410,584	-				-0.6
3,410,591	-				+1.1
3,410,652	+				-0.5
3,410,664	+				+0.3
3,410,695	+				-0.5
3,410,712	+				+1.4
3,410,724	+				-0.3
3,410,729	+				+0.1
3,410,745	-				+0.3
3,410,752	+				+1.4
3,410,774	-				-0.3
3,410,808	+				-1.0
3,410,808	+				-0.9
3,410,816	-				+1.1
3,410,816	-				-1.2
3,410,816	-				+0.2
3,410,816	-				+0.9
3,410,816	-				+0.1
3,410,816	-				+1.1
3,410,816	-				+0.8
3,410,816	-				+1.3
3,410,816	-				+0.3
3,410,816	-				+0.9
3,410,816	-				+0.5
3,410,816	-				+0.2
3,410,816	-				-1.1
3,410,816	-				-0.6
3,410,834	+				-0.6
3,410,855	-				+1.9
3,410,860	+		GFF3361	0.10	-1.1
3,410,874	-		GFF3361	0.11	-1.0
3,410,874	-		GFF3361	0.11	-1.3
3,410,914	+		GFF3361	0.12	-0.1
3,410,977	+		GFF3361	0.14	-0.0
3,410,982	+		GFF3361	0.15	+1.2
3,411,018	+		GFF3361	0.16	-0.9
3,411,031	-		GFF3361	0.17	-0.3
3,411,031	-		GFF3361	0.17	+0.1
3,411,042	-		GFF3361	0.17	-1.0
3,411,048	-		GFF3361	0.17	+1.6
3,411,048	-		GFF3361	0.17	-0.1
3,411,059	-		GFF3361	0.18	+1.4
3,411,078	+		GFF3361	0.18	-0.1
3,411,100	-		GFF3361	0.19	-1.0
3,411,106	-		GFF3361	0.19	+2.1