Strain Fitness in Sphingobium sp. HT1-2 around GFF3336

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,386,961	-		GFF3334	0.47	-0.7
3,387,051	+		GFF3334	0.56	-0.3
3,387,096	+		GFF3334	0.61	-1.0
3,387,100	-		GFF3334	0.61	-1.3
3,387,125	-		GFF3334	0.63	-0.5
3,387,238	-		GFF3334	0.75	-0.9
3,387,248	-		GFF3334	0.76	-0.7
3,387,279	+		GFF3334	0.79	-0.3
3,387,323	-		GFF3334	0.83	-0.3
3,387,333	-		GFF3334	0.84	-1.3
3,387,340	-		GFF3334	0.85	-0.6
3,387,494	+				-0.5
3,387,495	-				+0.8
3,387,511	+				-0.6
3,387,519	+				-1.5
3,387,519	+				-1.1
3,387,519	+				+0.7
3,387,528	-				-0.9
3,387,529	-				+0.3
3,387,547	+				-1.3
3,387,555	-				-0.7
3,387,572	+				-0.2
3,387,576	+		GFF3335	0.11	-1.2
3,387,606	-		GFF3335	0.18	-0.1
3,387,612	+		GFF3335	0.19	+1.0
3,387,613	+		GFF3335	0.20	-0.6
3,387,620	+		GFF3335	0.21	+0.4
3,387,628	-		GFF3335	0.23	-1.4
3,387,668	+		GFF3335	0.33	-1.5
3,387,685	+		GFF3335	0.37	+0.3
3,387,692	+		GFF3335	0.38	-0.8
3,387,693	-		GFF3335	0.39	-0.3
3,387,693	-		GFF3335	0.39	+0.9
3,387,697	+		GFF3335	0.39	+0.7
3,387,702	+		GFF3335	0.41	-0.9
3,387,702	+		GFF3335	0.41	-0.3
3,387,702	+		GFF3335	0.41	-0.6
3,387,702	+		GFF3335	0.41	-0.5
3,387,702	+		GFF3335	0.41	+0.5
3,387,702	+		GFF3335	0.41	-1.1
3,387,702	+		GFF3335	0.41	-0.9
3,387,702	+		GFF3335	0.41	-0.8
3,387,702	+		GFF3335	0.41	-0.6
3,387,702	+		GFF3335	0.41	+0.3
3,387,702	+		GFF3335	0.41	-1.3
3,387,702	+		GFF3335	0.41	-0.1
3,387,702	+		GFF3335	0.41	-2.1
3,387,705	-		GFF3335	0.41	-0.8
3,387,707	+		GFF3335	0.42	-1.2
3,387,708	-		GFF3335	0.42	-2.0
3,387,710	-		GFF3335	0.43	-1.3
3,387,710	-		GFF3335	0.43	-0.7
3,387,710	-		GFF3335	0.43	-1.2
3,387,710	-		GFF3335	0.43	-1.1
3,387,710	-		GFF3335	0.43	+1.2
3,387,712	+		GFF3335	0.43	+0.0
3,387,712	+		GFF3335	0.43	+0.2
3,387,718	+		GFF3335	0.44	-1.4
3,387,720	-		GFF3335	0.45	-1.2
3,387,720	-		GFF3335	0.45	+1.0
3,387,720	-		GFF3335	0.45	-0.6
3,387,737	+		GFF3335	0.49	-1.3
3,387,749	+		GFF3335	0.52	-1.1
3,387,764	+		GFF3335	0.55	-0.7
3,387,765	+		GFF3335	0.56	-0.1
3,387,784	+		GFF3335	0.60	-1.6
3,387,799	+		GFF3335	0.64	-0.1
3,387,814	-		GFF3335	0.67	+0.5
3,387,815	+		GFF3335	0.67	-1.1
3,387,833	-		GFF3335	0.72	+1.0
3,387,872	+		GFF3335	0.81	-2.4
3,387,872	+		GFF3335	0.81	-0.5
3,387,872	+		GFF3335	0.81	-1.0
3,387,900	-		GFF3335	0.87	+0.5
3,387,904	+		GFF3335	0.88	-0.6
3,387,904	+		GFF3335	0.88	-1.3
3,387,904	+		GFF3335	0.88	-0.8
3,387,904	+		GFF3335	0.88	+0.4
3,387,912	+				-0.1
3,387,912	+				+0.5
3,387,912	-				-0.3
3,387,945	+				-0.6
3,387,946	-				+0.3
3,387,953	-				+1.2
3,387,958	+				-1.3
3,387,964	+				-1.2
3,387,967	+				-1.7
3,387,975	+				+0.1
3,387,990	+				-1.1
3,387,990	+				-0.9
3,387,990	+				-1.0
3,387,995	+				-1.1
3,387,998	-				-1.6
3,388,074	+				-0.3
3,388,100	-				-0.5
3,388,133	+		GFF3336	0.10	-0.5
3,388,232	-		GFF3336	0.15	-0.3
3,388,293	+		GFF3336	0.19	-0.5
3,388,327	+		GFF3336	0.21	-0.6
3,388,382	+		GFF3336	0.24	-0.6
3,388,382	+		GFF3336	0.24	-0.5
3,388,505	-		GFF3336	0.30	-0.5
3,388,648	+		GFF3336	0.38	-0.7
3,388,721	+		GFF3336	0.42	-0.3
3,388,729	-		GFF3336	0.43	-0.8
3,388,731	+		GFF3336	0.43	-1.4
3,388,739	-		GFF3336	0.43	-0.5
3,388,763	-		GFF3336	0.45	-0.5
3,388,787	+		GFF3336	0.46	-0.5
3,388,809	-		GFF3336	0.47	-1.2
3,388,832	+		GFF3336	0.48	-0.3
3,388,921	+		GFF3336	0.53	-1.1
3,388,987	-		GFF3336	0.57	-1.0
3,389,209	+		GFF3336	0.69	-1.0
3,389,355	+		GFF3336	0.77	-1.0
3,389,406	-		GFF3336	0.80	-1.1
3,389,478	+		GFF3336	0.84	-0.5
3,389,668	+				-1.0
3,389,748	-				-0.9
3,389,755	+				-1.1
3,389,769	+				-0.5
3,389,777	-				-0.4
3,389,782	+				+0.6
3,389,811	+				-0.4
3,389,821	+				-0.5
3,389,821	+				-0.6
3,389,821	+				-0.3
3,389,821	+				+0.8
3,389,829	-				+0.2
3,389,829	-				-2.5
3,389,829	-				-0.1
3,389,839	-				-0.2
3,389,861	+				-0.8
3,389,869	-				-0.9
3,389,871	+				-0.1
3,389,871	+				-0.1
3,389,871	+				-1.0
3,389,876	+		GFF3337	0.10	-1.2
3,389,877	+		GFF3337	0.11	-0.8
3,389,877	-		GFF3337	0.11	-1.4
3,389,884	+		GFF3337	0.12	-1.3
3,389,924	+		GFF3337	0.21	-1.5
3,389,932	-		GFF3337	0.22	+0.4
3,389,936	+		GFF3337	0.23	+0.7
3,389,936	+		GFF3337	0.23	-0.5
3,389,938	+		GFF3337	0.24	-1.6
3,389,940	+		GFF3337	0.24	-0.3
3,389,970	-		GFF3337	0.30	-0.8
3,390,003	+		GFF3337	0.37	-1.1
3,390,003	+		GFF3337	0.37	-2.4
3,390,003	+		GFF3337	0.37	+0.1
3,390,013	+		GFF3337	0.39	-1.7
3,390,015	+		GFF3337	0.40	-0.3
3,390,016	-		GFF3337	0.40	+1.1
3,390,021	-		GFF3337	0.41	-1.0
3,390,036	+		GFF3337	0.44	-0.7
3,390,044	+		GFF3337	0.46	-0.5
3,390,044	+		GFF3337	0.46	-1.3
3,390,044	+		GFF3337	0.46	-1.7
3,390,044	+		GFF3337	0.46	-1.4
3,390,052	-		GFF3337	0.48	-0.2
3,390,057	-		GFF3337	0.49	-0.4
3,390,061	+		GFF3337	0.50	-0.2
3,390,061	+		GFF3337	0.50	-0.5
3,390,061	+		GFF3337	0.50	+0.6
3,390,094	+		GFF3337	0.57	+0.7
3,390,109	-		GFF3337	0.60	-0.8
3,390,120	+		GFF3337	0.62	+0.6
3,390,190	+		GFF3337	0.77	-2.4
3,390,190	+		GFF3337	0.77	-0.7
3,390,190	+		GFF3337	0.77	-0.6
3,390,190	+		GFF3337	0.77	-1.6
3,390,198	-		GFF3337	0.79	-2.9
3,390,198	-		GFF3337	0.79	-0.4
3,390,198	-		GFF3337	0.79	-1.6
3,390,198	-		GFF3337	0.79	-1.7
3,390,267	-				-0.5
3,390,281	-				-2.0
3,390,292	+				+0.6
3,390,292	+				-1.5
3,390,299	+				-0.1
3,390,300	-				+0.8
3,390,307	-				+0.2
3,390,315	-				+0.0
3,390,315	-				-2.0
3,390,315	-				+0.6
3,390,315	-				-0.1
3,390,317	+				+0.3
3,390,325	-				-1.4
3,390,325	-				+0.3
3,390,325	-				-0.4
3,390,370	-				+1.1
3,390,410	-				+0.0
3,390,435	-				+0.6
3,390,449	-		GFF3338	0.13	-0.4
3,390,458	-		GFF3338	0.15	+0.6
3,390,466	-		GFF3338	0.16	-1.2
3,390,466	-		GFF3338	0.16	-0.5
3,390,513	+		GFF3338	0.26	-0.4
3,390,521	-		GFF3338	0.27	+0.8
3,390,521	-		GFF3338	0.27	+0.4
3,390,521	-		GFF3338	0.27	+0.4
3,390,521	-		GFF3338	0.27	+0.6
3,390,523	+		GFF3338	0.28	+1.4
3,390,531	-		GFF3338	0.29	+0.4
3,390,531	-		GFF3338	0.29	-1.1
3,390,546	+		GFF3338	0.33	-0.6
3,390,547	-		GFF3338	0.33	-0.8
3,390,554	-		GFF3338	0.34	+1.1
3,390,577	-		GFF3338	0.39	-1.4
3,390,582	+		GFF3338	0.40	-0.8
3,390,590	-		GFF3338	0.41	+1.0
3,390,590	-		GFF3338	0.41	+0.0
3,390,599	-		GFF3338	0.43	+1.1
3,390,609	-		GFF3338	0.45	-1.1
3,390,616	+		GFF3338	0.47	+1.2
3,390,621	+		GFF3338	0.48	-0.7
3,390,626	+		GFF3338	0.49	-0.6
3,390,629	-		GFF3338	0.49	-0.2
3,390,629	-		GFF3338	0.49	+0.2
3,390,648	-		GFF3338	0.53	-1.2
3,390,683	-		GFF3338	0.60	-0.7
3,390,718	-		GFF3338	0.67	+0.7
3,390,736	+		GFF3338	0.71	-0.5
3,390,750	-		GFF3338	0.74	-0.9