Strain Fitness in Sphingobium sp. HT1-2 around GFF3296

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,348,742	-				-1.3
3,348,742	-				+0.7
3,348,742	-				-1.3
3,348,742	-				+0.8
3,348,742	-				-0.7
3,348,742	-				-0.1
3,348,742	-				-0.9
3,348,742	-				-1.3
3,348,801	+				-0.7
3,348,803	+				-0.7
3,348,851	+				-0.1
3,349,580	+				-0.2
3,349,580	+				-2.0
3,349,605	-				-0.2
3,349,614	-				-0.1
3,349,624	-				-0.0
3,349,640	+				+0.3
3,349,654	-				-0.5
3,349,669	-				-1.5
3,349,682	+				-1.3
3,349,709	+				+1.2
3,349,760	+				+1.1
3,349,760	+				+0.2
3,349,760	+				+0.4
3,349,760	+				-0.1
3,349,760	+				-1.3
3,349,760	+				+0.8
3,349,760	+				+0.5
3,349,760	+				-0.1
3,349,760	+				-1.1
3,349,760	+				-0.3
3,349,760	+				+0.4
3,349,760	+				-1.1
3,349,760	+				-1.1
3,349,765	+				-0.5
3,349,765	+				+0.1
3,349,768	-				-0.6
3,349,768	-				-0.1
3,349,768	-				+0.2
3,349,768	-				+0.0
3,349,768	-				-0.5
3,349,768	-				-0.5
3,349,768	-				-0.7
3,349,768	-				-0.6
3,349,768	-				-0.3
3,349,768	-				-1.2
3,349,768	-				-1.4
3,349,768	-				-1.2
3,349,768	-				+0.3
3,349,768	-				-0.5
3,349,768	-				-0.2
3,349,768	-				-1.7
3,349,768	-				+1.1
3,349,768	-				-0.5
3,349,768	-				-0.7
3,349,768	-				-0.5
3,349,768	-				-0.5
3,349,768	-				+0.2
3,349,768	-				+1.1
3,349,768	-				-0.2
3,349,773	-				+0.5
3,349,774	+				-1.3
3,349,779	+				+0.7
3,349,779	+				-1.3
3,349,789	+				+1.0
3,349,791	+				+0.3
3,349,793	-				-0.3
3,349,808	+		GFF3296	0.12	-0.4
3,349,821	+		GFF3296	0.13	-2.0
3,349,825	-		GFF3296	0.14	-1.3
3,349,843	+		GFF3296	0.16	+0.2
3,349,843	+		GFF3296	0.16	-0.1
3,349,843	+		GFF3296	0.16	-0.6
3,349,874	-		GFF3296	0.20	+0.2
3,349,879	+		GFF3296	0.20	-1.1
3,349,882	+		GFF3296	0.21	-0.5
3,349,890	-		GFF3296	0.22	-1.7
3,349,902	+		GFF3296	0.23	-0.0
3,349,907	+		GFF3296	0.24	-0.8
3,349,919	+		GFF3296	0.25	-1.2
3,349,927	-		GFF3296	0.26	-0.5
3,349,934	-		GFF3296	0.27	-0.3
3,349,987	+		GFF3296	0.34	+0.4
3,349,999	+		GFF3296	0.35	+1.1
3,350,012	-		GFF3296	0.37	-0.2
3,350,019	+		GFF3296	0.38	+0.1
3,350,019	+		GFF3296	0.38	-1.7
3,350,021	+		GFF3296	0.38	+0.7
3,350,021	+		GFF3296	0.38	+1.7
3,350,027	-		GFF3296	0.38	-1.3
3,350,029	+		GFF3296	0.39	-1.3
3,350,029	-		GFF3296	0.39	+0.4
3,350,029	-		GFF3296	0.39	+0.8
3,350,029	-		GFF3296	0.39	-1.0
3,350,029	-		GFF3296	0.39	-1.8
3,350,029	-		GFF3296	0.39	-2.1
3,350,056	-		GFF3296	0.42	-0.3
3,350,076	-		GFF3296	0.44	-0.9
3,350,091	-		GFF3296	0.46	+1.2
3,350,149	-		GFF3296	0.53	-0.3
3,350,158	+		GFF3296	0.55	-0.8
3,350,158	+		GFF3296	0.55	+0.2
3,350,158	+		GFF3296	0.55	-1.9
3,350,158	+		GFF3296	0.55	+0.5
3,350,158	+		GFF3296	0.55	-3.2
3,350,158	+		GFF3296	0.55	-0.1
3,350,158	+		GFF3296	0.55	-0.8
3,350,166	-		GFF3296	0.56	-2.4
3,350,166	-		GFF3296	0.56	-2.1
3,350,166	-		GFF3296	0.56	+0.8
3,350,173	+		GFF3296	0.56	-1.0
3,350,173	+		GFF3296	0.56	-0.6
3,350,173	+		GFF3296	0.56	-2.6
3,350,173	+		GFF3296	0.56	-1.1
3,350,173	+		GFF3296	0.56	-0.3
3,350,181	-		GFF3296	0.57	-0.8
3,350,181	-		GFF3296	0.57	-0.3
3,350,181	-		GFF3296	0.57	-0.4
3,350,181	-		GFF3296	0.57	-0.6
3,350,181	-		GFF3296	0.57	-1.2
3,350,181	-		GFF3296	0.57	-1.4
3,350,190	+		GFF3296	0.58	-1.8
3,350,207	+		GFF3296	0.61	+0.1
3,350,207	+		GFF3296	0.61	+0.4
3,350,215	-		GFF3296	0.62	-0.0
3,350,215	-		GFF3296	0.62	+0.8
3,350,215	-		GFF3296	0.62	+0.6
3,350,215	-		GFF3296	0.62	-0.4
3,350,215	-		GFF3296	0.62	-1.3
3,350,221	-		GFF3296	0.62	-1.3
3,350,243	-		GFF3296	0.65	-0.6
3,350,275	-		GFF3296	0.69	-0.3
3,350,278	+		GFF3296	0.69	-0.3
3,350,292	+		GFF3296	0.71	-0.8
3,350,300	-		GFF3296	0.72	-0.7
3,350,324	-		GFF3296	0.75	-0.7
3,350,333	-		GFF3296	0.76	-0.4
3,350,360	-		GFF3296	0.79	-0.1
3,350,366	+		GFF3296	0.80	-1.3
3,350,366	+		GFF3296	0.80	+1.9
3,350,366	+		GFF3296	0.80	-0.6
3,350,366	+		GFF3296	0.80	-2.2
3,350,371	+		GFF3296	0.81	-1.0
3,350,386	+		GFF3296	0.82	-0.8
3,350,386	+		GFF3296	0.82	-1.4
3,350,394	-		GFF3296	0.83	-0.9
3,350,394	-		GFF3296	0.83	-2.3
3,350,447	+				-0.3
3,350,457	+				-0.3
3,350,457	+				-0.3
3,350,463	+				+0.3
3,350,465	-				-1.2
3,350,465	-				-1.7
3,350,465	-				-0.3
3,350,465	-				-0.9
3,350,513	-				-1.6
3,350,536	+				-1.2
3,350,540	-				-0.7
3,350,544	-				-0.4
3,350,544	-				-1.1
3,350,546	+				-0.9
3,350,546	+				+0.9
3,350,551	+				+0.0
3,350,552	+				-1.1
3,350,554	-				-0.4
3,350,569	+				-1.5
3,350,569	-				-1.3
3,350,576	-				-1.4
3,350,584	+		GFF3297	0.11	-0.1
3,350,668	+		GFF3297	0.30	+0.1
3,350,670	+		GFF3297	0.30	-0.7
3,350,672	+		GFF3297	0.31	+0.4
3,350,677	+		GFF3297	0.32	+0.0
3,350,677	+		GFF3297	0.32	+1.0
3,350,686	-		GFF3297	0.34	-1.0
3,350,711	+		GFF3297	0.40	-0.3
3,350,719	-		GFF3297	0.41	+0.3
3,350,742	-		GFF3297	0.46	-0.9
3,350,785	-		GFF3297	0.56	-1.5
3,350,820	+		GFF3297	0.64	+0.2
3,350,827	+		GFF3297	0.65	+0.9
3,350,850	+		GFF3297	0.70	-0.0
3,350,850	+		GFF3297	0.70	+0.4
3,350,852	+		GFF3297	0.71	-0.6
3,350,852	+		GFF3297	0.71	-0.2
3,350,852	+		GFF3297	0.71	-0.6
3,350,860	-		GFF3297	0.73	-1.5
3,350,860	-		GFF3297	0.73	-1.5
3,350,861	-		GFF3297	0.73	-1.7
3,350,882	+		GFF3297	0.78	-0.7
3,350,917	-		GFF3297	0.85	-0.3
3,350,919	+		GFF3297	0.86	-0.3
3,350,939	+				-0.6
3,350,947	-				-0.3
3,350,952	+				+0.4
3,350,965	+				-1.6
3,350,965	+				-1.6
3,350,970	-				+0.7
3,350,972	+				-1.0
3,350,973	-				-0.9
3,350,973	-				-1.1
3,350,978	-				+1.2
3,351,001	+				+0.1
3,351,001	+				+1.5
3,351,010	-				-1.1
3,351,016	+				-1.5
3,351,016	+				-1.1
3,351,016	+				+1.0
3,351,016	+				-1.8
3,351,016	+				+0.2
3,351,016	+				-0.2
3,351,016	+				+0.5
3,351,019	-				-1.0
3,351,024	-				+0.4
3,351,024	-				-1.5
3,351,034	+				-0.5
3,351,038	-				-1.3
3,351,042	-				-1.3
3,351,046	-				-1.0