Strain Fitness in Sphingobium sp. HT1-2 around GFF3271

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,323,633	+				-0.3
3,323,645	+				-0.4
3,323,645	+				-0.5
3,323,655	+				+0.5
3,323,655	+				-0.5
3,323,663	-				+0.5
3,323,668	-				+1.5
3,323,679	+				-0.4
3,323,679	+				-0.2
3,323,679	+				-0.5
3,323,684	+				-0.2
3,323,687	+				-1.1
3,323,687	-				-1.4
3,323,687	-				-1.9
3,323,687	-				+0.2
3,323,689	+				+0.5
3,323,689	+				+0.6
3,323,708	+				-0.5
3,323,708	+				-1.2
3,323,708	+				-0.5
3,323,708	+				-1.7
3,323,715	+				-0.4
3,323,715	+				-1.1
3,323,715	+				-0.1
3,323,715	+				+1.0
3,323,715	+				+0.2
3,323,715	+				-2.7
3,323,716	-				-0.3
3,323,716	-				-1.1
3,323,716	-				-0.6
3,323,716	-				+0.8
3,323,716	-				-0.4
3,323,716	-				-1.2
3,323,716	-				-0.7
3,323,716	-				-0.5
3,323,716	-				-1.4
3,323,716	-				+0.1
3,323,716	-				+0.8
3,323,716	-				-0.8
3,323,716	-				-1.7
3,323,716	-				-0.9
3,323,716	-				+0.4
3,323,716	-				-1.1
3,323,716	-				-1.1
3,323,720	+				-0.7
3,323,720	+				-1.0
3,323,720	+				-1.0
3,323,720	+				-0.5
3,323,720	+				-0.6
3,323,720	+				-0.6
3,323,722	+				+1.3
3,323,722	+				+1.5
3,323,722	+				+0.6
3,323,722	+				-0.0
3,323,722	+				-0.5
3,323,722	+				-0.9
3,323,722	+				-0.7
3,323,722	+				-1.1
3,323,722	+				-1.1
3,323,723	-				+0.1
3,323,728	-				-0.5
3,323,728	-				+0.2
3,323,728	-				-0.2
3,323,728	-				+0.1
3,323,728	-				-0.9
3,323,730	-				-1.1
3,323,751	+				+1.1
3,323,770	-		GFF3270	0.11	-0.5
3,323,776	+		GFF3270	0.12	+0.2
3,323,783	+		GFF3270	0.13	+0.4
3,323,791	-		GFF3270	0.13	-1.1
3,323,802	+		GFF3270	0.15	-0.8
3,323,810	-		GFF3270	0.15	+0.2
3,323,819	+		GFF3270	0.16	+0.9
3,323,828	-		GFF3270	0.17	+1.0
3,323,850	-		GFF3270	0.20	-0.8
3,323,872	+		GFF3270	0.22	-0.4
3,323,892	-		GFF3270	0.24	+0.7
3,323,896	+		GFF3270	0.24	-0.7
3,323,942	+		GFF3270	0.29	-0.7
3,323,969	-		GFF3270	0.32	+0.2
3,323,995	+		GFF3270	0.34	-1.4
3,323,995	+		GFF3270	0.34	+0.3
3,323,995	+		GFF3270	0.34	-2.1
3,324,003	-		GFF3270	0.35	-0.9
3,324,003	-		GFF3270	0.35	+1.2
3,324,005	+		GFF3270	0.36	-0.6
3,324,005	+		GFF3270	0.36	-0.9
3,324,005	+		GFF3270	0.36	-1.8
3,324,005	+		GFF3270	0.36	-1.7
3,324,011	-		GFF3270	0.36	-1.6
3,324,012	+		GFF3270	0.36	-1.2
3,324,013	-		GFF3270	0.36	+0.2
3,324,013	-		GFF3270	0.36	+0.9
3,324,013	-		GFF3270	0.36	-1.5
3,324,020	-		GFF3270	0.37	-0.2
3,324,027	-		GFF3270	0.38	+1.1
3,324,051	+		GFF3270	0.40	-0.7
3,324,078	+		GFF3270	0.43	+0.1
3,324,078	+		GFF3270	0.43	-0.1
3,324,078	+		GFF3270	0.43	-1.6
3,324,086	-		GFF3270	0.44	-1.5
3,324,086	-		GFF3270	0.44	-0.7
3,324,091	-		GFF3270	0.44	-0.7
3,324,108	+		GFF3270	0.46	-0.7
3,324,128	+		GFF3270	0.48	-0.8
3,324,143	+		GFF3270	0.50	+0.0
3,324,151	-		GFF3270	0.51	-1.1
3,324,182	-		GFF3270	0.54	-0.5
3,324,196	-		GFF3270	0.55	-1.1
3,324,259	+		GFF3270	0.62	-1.5
3,324,269	-		GFF3270	0.63	-1.7
3,324,279	-		GFF3270	0.64	-0.5
3,324,281	+		GFF3270	0.64	+0.5
3,324,284	-		GFF3270	0.64	-0.2
3,324,284	-		GFF3270	0.64	+0.5
3,324,284	-		GFF3270	0.64	+0.6
3,324,286	+		GFF3270	0.64	-0.6
3,324,294	-		GFF3270	0.65	-0.1
3,324,294	-		GFF3270	0.65	-0.3
3,324,296	-		GFF3270	0.66	-0.5
3,324,306	-		GFF3270	0.67	-0.5
3,324,319	+		GFF3270	0.68	-0.2
3,324,327	-		GFF3270	0.69	-0.8
3,324,327	-		GFF3270	0.69	-0.4
3,324,329	+		GFF3270	0.69	+0.5
3,324,330	+		GFF3270	0.69	-1.6
3,324,354	-		GFF3270	0.72	-0.4
3,324,354	-		GFF3270	0.72	+1.5
3,324,365	+		GFF3270	0.73	+0.6
3,324,385	-		GFF3270	0.75	-2.1
3,324,398	+		GFF3270	0.76	-2.0
3,324,398	+		GFF3270	0.76	-0.1
3,324,398	+		GFF3270	0.76	-0.7
3,324,398	+		GFF3270	0.76	-1.4
3,324,398	+		GFF3270	0.76	+0.6
3,324,398	+		GFF3270	0.76	-1.5
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	+0.1
3,324,398	+		GFF3270	0.76	-1.5
3,324,398	+		GFF3270	0.76	-2.0
3,324,398	+		GFF3270	0.76	-0.1
3,324,398	+		GFF3270	0.76	-0.5
3,324,398	+		GFF3270	0.76	+0.3
3,324,398	+		GFF3270	0.76	+1.2
3,324,398	+		GFF3270	0.76	-0.5
3,324,398	+		GFF3270	0.76	-0.3
3,324,398	+		GFF3270	0.76	-1.7
3,324,398	+		GFF3270	0.76	-0.9
3,324,398	+		GFF3270	0.76	-0.3
3,324,398	+		GFF3270	0.76	+0.4
3,324,398	+		GFF3270	0.76	-0.4
3,324,398	+		GFF3270	0.76	-0.8
3,324,398	+		GFF3270	0.76	-1.5
3,324,398	+		GFF3270	0.76	+0.3
3,324,398	+		GFF3270	0.76	+0.6
3,324,398	+		GFF3270	0.76	-1.9
3,324,398	+		GFF3270	0.76	-0.2
3,324,398	+		GFF3270	0.76	+0.0
3,324,398	+		GFF3270	0.76	+1.7
3,324,398	+		GFF3270	0.76	-1.4
3,324,398	+		GFF3270	0.76	+0.5
3,324,398	+		GFF3270	0.76	-0.6
3,324,398	+		GFF3270	0.76	-1.1
3,324,398	+		GFF3270	0.76	-1.2
3,324,398	+		GFF3270	0.76	-0.4
3,324,398	+		GFF3270	0.76	-0.8
3,324,398	+		GFF3270	0.76	-0.6
3,324,398	+		GFF3270	0.76	-1.9
3,324,398	+		GFF3270	0.76	-1.1
3,324,401	-		GFF3270	0.76	-0.6
3,324,406	-		GFF3270	0.77	+0.3
3,324,406	-		GFF3270	0.77	-1.0
3,324,406	-		GFF3270	0.77	+0.1
3,324,406	-		GFF3270	0.77	-1.5
3,324,406	-		GFF3270	0.77	-1.1
3,324,406	-		GFF3270	0.77	+0.2
3,324,406	-		GFF3270	0.77	-0.6
3,324,406	-		GFF3270	0.77	+1.0
3,324,406	-		GFF3270	0.77	-1.4
3,324,406	-		GFF3270	0.77	-2.4
3,324,406	-		GFF3270	0.77	-1.2
3,324,406	-		GFF3270	0.77	+1.1
3,324,406	-		GFF3270	0.77	+0.7
3,324,406	-		GFF3270	0.77	+1.3
3,324,406	-		GFF3270	0.77	-0.8
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-0.7
3,324,406	-		GFF3270	0.77	-1.3
3,324,406	-		GFF3270	0.77	-1.9
3,324,406	-		GFF3270	0.77	-1.3
3,324,406	-		GFF3270	0.77	-0.4
3,324,406	-		GFF3270	0.77	+0.4
3,324,406	-		GFF3270	0.77	-0.4
3,324,406	-		GFF3270	0.77	-2.1
3,324,406	-		GFF3270	0.77	-0.5
3,324,406	-		GFF3270	0.77	+0.4
3,324,406	-		GFF3270	0.77	-0.7
3,324,406	-		GFF3270	0.77	-2.4
3,324,406	-		GFF3270	0.77	-0.9
3,324,406	-		GFF3270	0.77	+0.2
3,324,406	-		GFF3270	0.77	-1.5
3,324,406	-		GFF3270	0.77	-1.9
3,324,406	-		GFF3270	0.77	-1.3
3,324,406	-		GFF3270	0.77	-0.5
3,324,406	-		GFF3270	0.77	-0.6
3,324,406	-		GFF3270	0.77	+0.1
3,324,406	-		GFF3270	0.77	-1.6
3,324,406	-		GFF3270	0.77	-0.5
3,324,406	-		GFF3270	0.77	-1.2
3,324,406	-		GFF3270	0.77	-0.2
3,324,406	-		GFF3270	0.77	-0.8
3,324,406	-		GFF3270	0.77	+0.6
3,324,406	-		GFF3270	0.77	-0.9
3,324,406	-		GFF3270	0.77	-0.3
3,324,406	-		GFF3270	0.77	-0.8
3,324,412	+		GFF3270	0.78	-0.9
3,324,414	+		GFF3270	0.78	-1.6
3,324,422	-		GFF3270	0.79	-1.1
3,324,422	-		GFF3270	0.79	+0.4
3,324,431	+		GFF3270	0.79	+1.3
3,324,431	+		GFF3270	0.79	-1.8
3,324,431	+		GFF3270	0.79	-0.4
3,324,431	+		GFF3270	0.79	-0.6
3,324,439	-		GFF3270	0.80	-1.2
3,324,479	-		GFF3270	0.84	+1.0
3,324,481	-		GFF3270	0.85	-1.2
3,324,481	-		GFF3270	0.85	+0.7
3,324,488	+		GFF3270	0.85	-0.8
3,324,488	+		GFF3270	0.85	-1.4
3,324,488	+		GFF3270	0.85	+0.4
3,324,488	+		GFF3270	0.85	+0.4
3,324,488	+		GFF3270	0.85	-0.4
3,324,488	+		GFF3270	0.85	-1.2
3,324,488	+		GFF3270	0.85	-0.4
3,324,488	+		GFF3270	0.85	-0.3
3,324,488	+		GFF3270	0.85	+0.6
3,324,490	+		GFF3270	0.86	+1.6
3,324,496	-		GFF3270	0.86	-1.1
3,324,496	-		GFF3270	0.86	+0.9
3,324,496	-		GFF3270	0.86	+1.2
3,324,496	-		GFF3270	0.86	-1.2
3,324,496	-		GFF3270	0.86	+0.3
3,324,496	-		GFF3270	0.86	+0.5
3,324,496	-		GFF3270	0.86	-1.1
3,324,498	-		GFF3270	0.86	+0.9
3,324,498	-		GFF3270	0.86	-1.8
3,324,521	+		GFF3270	0.89	-0.6
3,324,545	-				-0.8
3,324,555	+				-1.3
3,324,558	-				-2.1
3,324,560	+				-0.6
3,324,560	+				-2.3
3,324,560	+				-0.8
3,324,560	+				+0.7
3,324,568	-				+0.7
3,324,568	-				-0.1
3,324,568	-				-0.0
3,324,568	-				+0.9
3,324,594	-				-0.4
3,324,607	+				+0.0
3,324,607	+				-0.3
3,324,607	+				+1.1
3,324,607	+				-2.4
3,324,609	-				-0.4
3,324,615	-				-0.7
3,324,615	-				-0.5
3,324,615	-				-1.0
3,324,615	-				+0.2
3,324,615	-				+0.3
3,324,615	-				+1.4
3,324,695	+		GFF3271	0.21	-1.1
3,324,749	-		GFF3271	0.38	-0.3
3,324,759	-		GFF3271	0.41	-0.4
3,324,759	-		GFF3271	0.41	+0.6
3,324,808	+		GFF3271	0.56	-1.0
3,324,808	+		GFF3271	0.56	-0.8
3,324,813	-		GFF3271	0.58	-0.7
3,324,835	+		GFF3271	0.65	-0.4
3,324,837	+		GFF3271	0.65	-0.6
3,324,837	+		GFF3271	0.65	-1.0
3,324,845	-		GFF3271	0.68	-0.7
3,324,845	-		GFF3271	0.68	-1.6
3,324,858	+		GFF3271	0.72	-2.5
3,324,867	+		GFF3271	0.75	-0.4
3,324,867	+		GFF3271	0.75	+0.5
3,324,867	+		GFF3271	0.75	+0.0
3,324,867	+		GFF3271	0.75	-0.6
3,324,875	-		GFF3271	0.77	-1.4
3,324,875	-		GFF3271	0.77	-0.1
3,324,875	-		GFF3271	0.77	+0.6
3,324,875	-		GFF3271	0.77	-0.3
3,324,885	+		GFF3271	0.81	+0.3
3,324,887	-		GFF3271	0.81	+0.1
3,324,900	-		GFF3271	0.85	-1.1
3,324,905	-		GFF3271	0.87	-0.5
3,324,919	+				-0.8
3,324,919	+				-0.4
3,324,919	+				-0.4
3,324,919	+				-0.1
3,324,919	+				-0.6
3,324,919	+				-2.0
3,324,919	+				-1.7
3,324,919	+				+0.2
3,324,927	-				-0.5
3,324,927	-				+0.7
3,324,927	-				-0.3
3,324,927	-				-2.2
3,324,927	-				+0.1
3,324,927	-				-0.8
3,324,927	-				-0.5
3,324,929	+				-1.2
3,324,929	+				+0.4
3,324,929	+				-0.4
3,324,937	-				+0.2
3,324,937	-				-0.6
3,324,937	-				-1.2
3,324,953	+				-0.7
3,324,953	+				+0.1
3,324,961	-				+0.5
3,325,002	-				+0.1
3,325,004	-				-0.2
3,325,004	-				-0.7
3,325,007	+				+0.6
3,325,033	+				+0.8
3,325,059	+				+0.0
3,325,059	+				-1.5
3,325,059	+				-1.0
3,325,059	+				+0.0
3,325,059	+				-0.4
3,325,059	+				+1.8
3,325,059	+				+0.1
3,325,059	+				+0.6
3,325,062	+				-1.0
3,325,067	-				-0.7
3,325,067	-				+1.6
3,325,067	-				+0.4
3,325,067	-				+0.3
3,325,067	-				-1.4
3,325,067	-				-0.2
3,325,067	-				-0.6
3,325,078	-				+0.5
3,325,115	+		GFF3272	0.10	-1.5
3,325,115	+		GFF3272	0.10	-0.7
3,325,115	+		GFF3272	0.10	+0.4
3,325,120	+		GFF3272	0.10	+0.8
3,325,125	+		GFF3272	0.11	+0.3
3,325,125	+		GFF3272	0.11	-1.2
3,325,133	-		GFF3272	0.11	-0.8
3,325,160	+		GFF3272	0.13	+1.1
3,325,160	+		GFF3272	0.13	+0.6
3,325,160	+		GFF3272	0.13	+0.7
3,325,168	-		GFF3272	0.14	-0.8
3,325,168	-		GFF3272	0.14	+0.8
3,325,169	-		GFF3272	0.14	+1.1
3,325,173	-		GFF3272	0.14	+0.6
3,325,191	+		GFF3272	0.16	+1.2
3,325,212	+		GFF3272	0.17	+0.6
3,325,214	+		GFF3272	0.18	-1.3
3,325,222	-		GFF3272	0.18	+0.1
3,325,257	-		GFF3272	0.21	-0.6
3,325,264	-		GFF3272	0.21	-0.7
3,325,266	+		GFF3272	0.22	-0.3
3,325,266	+		GFF3272	0.22	-0.7
3,325,266	+		GFF3272	0.22	+2.2
3,325,266	+		GFF3272	0.22	-0.4
3,325,266	+		GFF3272	0.22	+0.0
3,325,272	-		GFF3272	0.22	-0.7
3,325,274	-		GFF3272	0.22	+1.4
3,325,274	-		GFF3272	0.22	+0.3
3,325,278	+		GFF3272	0.22	-1.0
3,325,278	+		GFF3272	0.22	+0.2
3,325,283	+		GFF3272	0.23	+0.2
3,325,283	+		GFF3272	0.23	-1.1
3,325,286	-		GFF3272	0.23	-0.5
3,325,340	-		GFF3272	0.27	-2.2
3,325,351	-		GFF3272	0.28	-0.7
3,325,363	+		GFF3272	0.29	-1.0
3,325,367	+		GFF3272	0.29	-1.4
3,325,379	+		GFF3272	0.30	-0.1
3,325,387	-		GFF3272	0.31	+0.0
3,325,387	-		GFF3272	0.31	-0.6
3,325,391	+		GFF3272	0.31	-2.1
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