Strain Fitness in Sphingobium sp. HT1-2 around GFF3253

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,309,115	+				+0.7
3,309,115	+				-2.0
3,309,204	+				-1.4
3,309,214	+				+0.9
3,309,214	+				+0.4
3,309,245	-				-1.3
3,309,245	-				-1.1
3,309,250	-				-0.2
3,309,250	-				-0.2
3,309,250	-				+0.4
3,309,266	+				+0.3
3,309,272	+				+0.9
3,309,281	+				-1.0
3,309,291	+				+0.3
3,309,291	+				-0.4
3,309,291	+				-0.1
3,309,299	-				-0.3
3,309,299	-				+0.3
3,309,299	-				-2.4
3,309,300	+				+1.4
3,309,301	-				-1.3
3,309,314	+				+0.3
3,309,315	-				-1.1
3,309,322	-				+0.9
3,309,325	+				-0.6
3,309,325	+				+0.6
3,309,327	+				-0.2
3,309,335	-				-1.1
3,309,340	-				+0.7
3,309,344	+				-0.5
3,309,346	+				-0.6
3,309,359	+				+0.8
3,309,369	+				-2.1
3,309,382	+				-0.1
3,309,385	-		GFF3252	0.10	-0.4
3,309,385	-		GFF3252	0.10	+0.0
3,309,435	-		GFF3252	0.19	-1.2
3,309,458	+		GFF3252	0.22	-1.4
3,309,477	+		GFF3252	0.26	-0.3
3,309,477	+		GFF3252	0.26	-0.9
3,309,477	+		GFF3252	0.26	-1.4
3,309,478	-		GFF3252	0.26	-0.8
3,309,482	+		GFF3252	0.26	-1.0
3,309,482	+		GFF3252	0.26	-0.4
3,309,482	+		GFF3252	0.26	-0.8
3,309,485	-		GFF3252	0.27	-0.0
3,309,485	-		GFF3252	0.27	-0.9
3,309,485	-		GFF3252	0.27	-0.5
3,309,490	-		GFF3252	0.28	-0.7
3,309,490	-		GFF3252	0.28	-2.0
3,309,490	-		GFF3252	0.28	-0.7
3,309,490	-		GFF3252	0.28	-1.8
3,309,490	-		GFF3252	0.28	-0.1
3,309,490	-		GFF3252	0.28	+0.9
3,309,490	-		GFF3252	0.28	+0.0
3,309,499	+		GFF3252	0.29	-0.4
3,309,499	+		GFF3252	0.29	-0.4
3,309,499	+		GFF3252	0.29	-0.6
3,309,499	+		GFF3252	0.29	-0.1
3,309,499	+		GFF3252	0.29	-2.2
3,309,499	+		GFF3252	0.29	-1.0
3,309,499	+		GFF3252	0.29	-0.2
3,309,506	+		GFF3252	0.30	+0.6
3,309,507	-		GFF3252	0.31	-1.4
3,309,507	-		GFF3252	0.31	-0.4
3,309,507	-		GFF3252	0.31	+0.4
3,309,507	-		GFF3252	0.31	-0.6
3,309,513	+		GFF3252	0.32	+0.4
3,309,514	-		GFF3252	0.32	+1.4
3,309,514	-		GFF3252	0.32	+0.4
3,309,519	-		GFF3252	0.33	-0.5
3,309,519	-		GFF3252	0.33	-0.5
3,309,532	-		GFF3252	0.35	-1.5
3,309,551	-		GFF3252	0.38	-1.9
3,309,551	-		GFF3252	0.38	-0.3
3,309,553	+		GFF3252	0.38	-0.8
3,309,563	+		GFF3252	0.40	+0.4
3,309,571	-		GFF3252	0.41	-0.4
3,309,577	-		GFF3252	0.42	-0.7
3,309,618	-		GFF3252	0.49	-0.2
3,309,625	+		GFF3252	0.50	-1.0
3,309,631	+		GFF3252	0.51	-0.8
3,309,631	+		GFF3252	0.51	+0.6
3,309,638	-		GFF3252	0.52	+0.0
3,309,639	-		GFF3252	0.52	+0.1
3,309,642	-		GFF3252	0.53	-1.7
3,309,644	-		GFF3252	0.53	-1.5
3,309,645	+		GFF3252	0.53	+1.0
3,309,645	+		GFF3252	0.53	+0.6
3,309,653	-		GFF3252	0.55	-0.9
3,309,655	+		GFF3252	0.55	-0.3
3,309,658	-		GFF3252	0.55	-1.3
3,309,661	-		GFF3252	0.56	-0.4
3,309,663	-		GFF3252	0.56	-0.5
3,309,699	+		GFF3252	0.62	-1.0
3,309,699	+		GFF3252	0.62	-1.1
3,309,707	-		GFF3252	0.64	-1.3
3,309,707	-		GFF3252	0.64	+1.0
3,309,740	+		GFF3252	0.69	-0.8
3,309,745	+		GFF3252	0.70	+0.5
3,309,745	+		GFF3252	0.70	-0.3
3,309,745	+		GFF3252	0.70	-0.8
3,309,748	-		GFF3252	0.70	+0.5
3,309,748	-		GFF3252	0.70	-0.4
3,309,753	-		GFF3252	0.71	-0.9
3,309,760	-		GFF3252	0.72	+0.4
3,309,764	-		GFF3252	0.73	-0.3
3,309,771	+		GFF3252	0.74	-0.4
3,309,772	+		GFF3252	0.74	+0.0
3,309,779	-		GFF3252	0.75	-0.5
3,309,797	-		GFF3252	0.78	-1.1
3,309,802	-		GFF3252	0.79	-0.6
3,309,802	-		GFF3252	0.79	-1.4
3,309,802	-		GFF3252	0.79	-1.7
3,309,802	-		GFF3252	0.79	-1.4
3,309,802	-		GFF3252	0.79	-1.1
3,309,802	-		GFF3252	0.79	+0.5
3,309,809	+		GFF3252	0.80	-0.6
3,309,815	+		GFF3252	0.81	-0.3
3,309,818	-		GFF3252	0.82	-1.3
3,309,821	-		GFF3252	0.82	-2.1
3,309,829	-		GFF3252	0.84	-0.6
3,309,833	+		GFF3252	0.84	+0.4
3,309,833	+		GFF3252	0.84	-1.2
3,309,833	+		GFF3252	0.84	-0.4
3,309,833	+		GFF3252	0.84	-0.2
3,309,833	-		GFF3252	0.84	+1.1
3,309,841	-		GFF3252	0.86	-0.4
3,309,841	-		GFF3252	0.86	-0.1
3,309,841	-		GFF3252	0.86	+1.7
3,309,841	-		GFF3252	0.86	-1.1
3,309,860	-		GFF3252	0.89	+0.3
3,309,860	-		GFF3252	0.89	-0.1
3,309,902	-				-1.5
3,309,904	+				-1.2
3,309,904	-				-0.6
3,309,909	+				-1.7
3,309,912	-				-0.8
3,309,912	-				-0.3
3,309,939	+				-1.1
3,309,957	+				+0.7
3,309,957	-				-1.7
3,309,965	+				+0.6
3,309,965	-				-0.8
3,309,967	+				+0.3
3,310,096	+				-0.7
3,310,096	+				-0.9
3,310,102	-				-0.7
3,310,104	+				-0.2
3,310,104	+				+0.5
3,310,106	+				-0.3
3,310,114	-				+0.5
3,310,117	+				-0.2
3,310,117	+				-1.4
3,310,117	+				-1.7
3,310,125	-				+1.5
3,310,125	-				-0.8
3,310,125	-				-0.7
3,310,141	+				-1.1
3,310,152	+				-0.6
3,310,156	+				-1.1
3,310,161	+				+0.5
3,310,164	-				-0.5
3,310,164	-				+0.8
3,310,169	-				-0.1
3,310,179	-				-0.8
3,310,192	-		GFF3253	0.11	+0.1
3,310,208	+		GFF3253	0.13	-1.1
3,310,212	+		GFF3253	0.14	-0.7
3,310,216	-		GFF3253	0.15	-1.9
3,310,242	+		GFF3253	0.18	+0.5
3,310,242	+		GFF3253	0.18	-0.3
3,310,250	-		GFF3253	0.20	-0.5
3,310,250	-		GFF3253	0.20	+0.3
3,310,270	+		GFF3253	0.22	-1.2
3,310,285	-		GFF3253	0.25	-0.7
3,310,293	+		GFF3253	0.26	+0.9
3,310,306	+		GFF3253	0.28	-0.6
3,310,309	-		GFF3253	0.28	-2.7
3,310,314	-		GFF3253	0.29	-2.3
3,310,315	+		GFF3253	0.29	-1.9
3,310,338	+		GFF3253	0.32	-1.5
3,310,352	+		GFF3253	0.34	-0.4
3,310,352	+		GFF3253	0.34	+0.6
3,310,352	+		GFF3253	0.34	+0.1
3,310,352	+		GFF3253	0.34	+1.5
3,310,352	+		GFF3253	0.34	-1.1
3,310,352	+		GFF3253	0.34	-0.2
3,310,352	+		GFF3253	0.34	-1.4
3,310,352	+		GFF3253	0.34	-1.6
3,310,352	+		GFF3253	0.34	+0.2
3,310,352	+		GFF3253	0.34	-1.1
3,310,352	+		GFF3253	0.34	-0.6
3,310,352	+		GFF3253	0.34	-1.6
3,310,352	+		GFF3253	0.34	+0.2
3,310,352	+		GFF3253	0.34	+0.8
3,310,352	+		GFF3253	0.34	-0.5
3,310,355	-		GFF3253	0.35	+2.6
3,310,360	-		GFF3253	0.36	-2.0
3,310,360	-		GFF3253	0.36	+0.3
3,310,360	-		GFF3253	0.36	+0.9
3,310,360	-		GFF3253	0.36	-1.0
3,310,360	-		GFF3253	0.36	-1.8
3,310,360	-		GFF3253	0.36	+0.5
3,310,360	-		GFF3253	0.36	+0.2
3,310,360	-		GFF3253	0.36	-1.5
3,310,360	-		GFF3253	0.36	-1.2
3,310,360	-		GFF3253	0.36	+0.2
3,310,360	-		GFF3253	0.36	-0.4
3,310,360	-		GFF3253	0.36	+0.9
3,310,360	-		GFF3253	0.36	+0.0
3,310,360	-		GFF3253	0.36	+0.4
3,310,360	-		GFF3253	0.36	-0.1
3,310,360	-		GFF3253	0.36	+0.2
3,310,360	-		GFF3253	0.36	-0.7
3,310,360	-		GFF3253	0.36	-0.9
3,310,365	-		GFF3253	0.36	+0.5
3,310,386	+		GFF3253	0.39	-1.1
3,310,386	+		GFF3253	0.39	-0.9
3,310,389	-		GFF3253	0.40	-0.8
3,310,444	+		GFF3253	0.48	-0.0
3,310,445	+		GFF3253	0.48	-0.9
3,310,445	+		GFF3253	0.48	+0.4
3,310,445	+		GFF3253	0.48	+0.5
3,310,452	-		GFF3253	0.49	-0.9
3,310,453	-		GFF3253	0.49	-0.7
3,310,486	-		GFF3253	0.54	-2.5
3,310,490	+		GFF3253	0.54	-0.7
3,310,490	+		GFF3253	0.54	-0.2
3,310,491	+		GFF3253	0.54	+0.3
3,310,509	+		GFF3253	0.57	+0.4
3,310,517	-		GFF3253	0.58	-0.3
3,310,517	-		GFF3253	0.58	-1.1
3,310,517	-		GFF3253	0.58	-0.9
3,310,522	-		GFF3253	0.59	-1.3
3,310,551	+		GFF3253	0.63	-1.1
3,310,605	+		GFF3253	0.71	-1.2
3,310,615	-		GFF3253	0.72	+0.0
3,310,629	+		GFF3253	0.74	-0.1
3,310,637	-		GFF3253	0.76	+1.3
3,310,637	-		GFF3253	0.76	-1.0
3,310,637	-		GFF3253	0.76	-1.2
3,310,642	+		GFF3253	0.76	+0.8
3,310,701	+		GFF3253	0.85	-1.4
3,310,701	+		GFF3253	0.85	-0.6
3,310,701	+		GFF3253	0.85	-0.2
3,310,701	+		GFF3253	0.85	+1.0
3,310,701	+		GFF3253	0.85	+0.2
3,310,709	-		GFF3253	0.86	+1.0
3,310,709	-		GFF3253	0.86	+0.1
3,310,709	-		GFF3253	0.86	-0.2
3,310,709	-		GFF3253	0.86	-0.0
3,310,709	-		GFF3253	0.86	-1.0
3,310,709	-		GFF3253	0.86	-1.9
3,310,709	-		GFF3253	0.86	+0.7
3,310,746	+				-1.0
3,310,746	+				-0.9
3,310,746	+				-1.1
3,310,746	+				+0.3
3,310,746	+				-0.4
3,310,746	+				-0.9
3,310,746	+				+0.1
3,310,746	+				-1.0
3,310,754	-				-1.4
3,310,754	-				-1.1
3,310,754	-				-1.2
3,310,754	-				+0.9
3,310,754	-				+0.5
3,310,754	-				-0.3
3,310,754	-				-0.2
3,310,756	+				-1.2
3,310,759	-				+0.0
3,310,759	-				+0.4
3,310,759	-				-0.4
3,310,761	+				-0.1
3,310,761	+				+0.7
3,310,769	+				-1.5
3,310,769	-				+0.8
3,310,769	-				-1.4
3,310,769	-				-0.8
3,310,782	+				+0.5
3,310,782	+				-0.5
3,310,783	-				+0.6
3,310,787	+				-0.4
3,310,790	-				-1.6
3,310,790	-				-0.8
3,310,790	-				-0.4
3,310,790	-				+1.4
3,310,795	-				+1.4
3,310,803	+				-1.3
3,310,803	+				-0.3
3,310,808	+				-0.2
3,310,808	-				-0.5
3,310,815	+				-1.1
3,310,819	+				+1.2
3,310,819	+				+0.1
3,310,819	+				-0.8
3,310,819	+				-1.2
3,310,819	+				+0.3
3,310,827	-				+0.6
3,310,872	-				-1.2
3,311,305	+		GFF3254	0.90	-1.2
3,311,329	+				+0.6
3,311,344	+				+0.2
3,311,345	+				+0.6
3,311,350	+				-0.1
3,311,358	-				-0.5