Strain Fitness in Sphingobium sp. HT1-2 around GFF3100

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,167,207	+				+1.3
3,167,254	-				-1.9
3,167,264	+				-0.4
3,167,294	-				-0.3
3,167,305	-				+1.1
3,167,316	+				+0.3
3,167,321	+				-1.4
3,167,328	+				-0.5
3,167,354	+				-0.2
3,167,373	-				-1.1
3,167,390	-		GFF3099	0.11	+0.4
3,167,472	+		GFF3099	0.21	+0.1
3,167,475	+		GFF3099	0.22	-0.6
3,167,483	-		GFF3099	0.23	-0.6
3,167,483	-		GFF3099	0.23	-1.0
3,167,483	-		GFF3099	0.23	+1.0
3,167,496	+		GFF3099	0.24	-0.8
3,167,524	+		GFF3099	0.28	-1.1
3,167,524	+		GFF3099	0.28	+0.4
3,167,527	-		GFF3099	0.28	-1.9
3,167,532	-		GFF3099	0.29	+1.0
3,167,532	-		GFF3099	0.29	-1.2
3,167,539	+		GFF3099	0.30	-0.2
3,167,544	+		GFF3099	0.30	-0.1
3,167,554	+		GFF3099	0.31	-0.5
3,167,562	-		GFF3099	0.32	+1.1
3,167,562	-		GFF3099	0.32	-0.1
3,167,573	+		GFF3099	0.34	+0.1
3,167,573	+		GFF3099	0.34	-1.8
3,167,577	+		GFF3099	0.34	-0.4
3,167,581	-		GFF3099	0.35	+0.1
3,167,585	-		GFF3099	0.35	-0.9
3,167,587	+		GFF3099	0.36	-1.9
3,167,587	+		GFF3099	0.36	-1.5
3,167,597	+		GFF3099	0.37	+1.1
3,167,597	+		GFF3099	0.37	+0.4
3,167,601	-		GFF3099	0.37	-0.8
3,167,603	+		GFF3099	0.38	+0.7
3,167,605	-		GFF3099	0.38	-0.8
3,167,605	-		GFF3099	0.38	+0.8
3,167,611	-		GFF3099	0.39	-0.5
3,167,611	-		GFF3099	0.39	+0.7
3,167,633	+		GFF3099	0.41	-0.4
3,167,633	-		GFF3099	0.41	+0.3
3,167,640	+		GFF3099	0.42	-1.3
3,167,641	-		GFF3099	0.42	-0.6
3,167,644	+		GFF3099	0.43	-1.2
3,167,652	-		GFF3099	0.44	-0.6
3,167,672	+		GFF3099	0.46	-0.4
3,167,672	+		GFF3099	0.46	-0.4
3,167,672	+		GFF3099	0.46	-1.4
3,167,672	+		GFF3099	0.46	-2.2
3,167,673	+		GFF3099	0.46	+0.1
3,167,680	-		GFF3099	0.47	-0.7
3,167,704	+		GFF3099	0.50	+0.1
3,167,714	+		GFF3099	0.51	-0.1
3,167,722	-		GFF3099	0.52	+0.6
3,167,735	+		GFF3099	0.54	-1.0
3,167,740	+		GFF3099	0.55	+0.9
3,167,743	-		GFF3099	0.55	-0.4
3,167,743	-		GFF3099	0.55	-1.0
3,167,753	-		GFF3099	0.56	+2.3
3,167,753	-		GFF3099	0.56	-2.0
3,167,753	-		GFF3099	0.56	-1.2
3,167,753	-		GFF3099	0.56	-0.7
3,167,757	-		GFF3099	0.57	+1.9
3,167,761	-		GFF3099	0.57	-1.1
3,167,763	-		GFF3099	0.57	+0.4
3,167,776	-		GFF3099	0.59	-0.4
3,167,787	+		GFF3099	0.60	-0.4
3,167,792	+		GFF3099	0.61	-2.3
3,167,796	-		GFF3099	0.61	-2.3
3,167,815	+		GFF3099	0.64	+0.4
3,167,815	+		GFF3099	0.64	-1.4
3,167,815	+		GFF3099	0.64	-0.6
3,167,815	+		GFF3099	0.64	-0.4
3,167,815	+		GFF3099	0.64	+0.6
3,167,815	+		GFF3099	0.64	-0.7
3,167,823	-		GFF3099	0.65	-0.9
3,167,823	-		GFF3099	0.65	-0.6
3,167,823	-		GFF3099	0.65	-1.0
3,167,823	-		GFF3099	0.65	+0.2
3,167,823	-		GFF3099	0.65	+0.3
3,167,825	+		GFF3099	0.65	-1.8
3,167,833	-		GFF3099	0.66	-1.0
3,167,842	+		GFF3099	0.67	-2.8
3,167,869	-		GFF3099	0.71	-0.8
3,167,874	-		GFF3099	0.71	-0.8
3,167,879	+		GFF3099	0.72	-0.8
3,167,917	-		GFF3099	0.76	+0.1
3,167,926	-		GFF3099	0.78	+0.2
3,167,928	-		GFF3099	0.78	+0.6
3,167,942	-		GFF3099	0.80	-1.6
3,167,943	-		GFF3099	0.80	-0.1
3,167,943	-		GFF3099	0.80	-0.9
3,167,955	+		GFF3099	0.81	-0.8
3,167,955	+		GFF3099	0.81	-3.1
3,167,963	-		GFF3099	0.82	-2.1
3,167,966	+		GFF3099	0.83	+0.5
3,167,973	-		GFF3099	0.83	+1.3
3,168,026	+				-0.1
3,168,026	+				+0.3
3,168,026	+				+0.6
3,168,046	-				+0.4
3,168,075	+				-1.5
3,168,082	+				+1.0
3,168,091	+				+1.2
3,168,091	+				+0.6
3,168,107	+				+0.3
3,168,109	-				-1.9
3,168,115	-				-1.4
3,168,128	+				-1.2
3,168,137	-				-1.4
3,168,156	+				+1.1
3,168,174	+				-0.0
3,168,174	+				+0.9
3,168,182	-				-1.0
3,168,194	-				+1.1
3,168,195	-				-1.3
3,168,224	+				-0.7
3,168,237	-				-0.4
3,168,262	-				-1.0
3,168,284	+				-1.5
3,168,297	-				-1.0
3,168,297	-				-0.7
3,168,304	-				-1.0
3,168,320	-				+1.0
3,168,331	-		GFF3100	0.10	+0.3
3,168,346	-		GFF3100	0.11	+0.6
3,168,373	+		GFF3100	0.13	-0.6
3,168,381	-		GFF3100	0.13	+0.4
3,168,390	-		GFF3100	0.14	-1.0
3,168,398	-		GFF3100	0.14	-1.1
3,168,398	-		GFF3100	0.14	+0.3
3,168,398	-		GFF3100	0.14	+1.1
3,168,399	+		GFF3100	0.14	+0.6
3,168,407	-		GFF3100	0.15	+0.1
3,168,407	-		GFF3100	0.15	-0.4
3,168,407	-		GFF3100	0.15	-0.4
3,168,410	+		GFF3100	0.15	+0.3
3,168,410	+		GFF3100	0.15	-0.9
3,168,410	+		GFF3100	0.15	-2.4
3,168,410	+		GFF3100	0.15	-0.7
3,168,412	-		GFF3100	0.15	-0.7
3,168,412	-		GFF3100	0.15	-0.9
3,168,414	-		GFF3100	0.15	-0.3
3,168,418	-		GFF3100	0.16	-1.1
3,168,418	-		GFF3100	0.16	-1.6
3,168,418	-		GFF3100	0.16	-0.2
3,168,418	-		GFF3100	0.16	+0.3
3,168,418	-		GFF3100	0.16	+0.3
3,168,437	-		GFF3100	0.17	-0.5
3,168,458	+		GFF3100	0.18	-0.3
3,168,458	+		GFF3100	0.18	-0.6
3,168,458	+		GFF3100	0.18	-2.1
3,168,466	-		GFF3100	0.18	-1.5
3,168,467	-		GFF3100	0.19	-0.2
3,168,494	+		GFF3100	0.20	+0.3
3,168,511	+		GFF3100	0.21	-1.3
3,168,533	+		GFF3100	0.23	+0.5
3,168,543	+		GFF3100	0.23	-0.9
3,168,580	+		GFF3100	0.25	-0.3
3,168,580	+		GFF3100	0.25	-0.5
3,168,602	+		GFF3100	0.27	-0.2
3,168,620	+		GFF3100	0.28	-1.3
3,168,633	-		GFF3100	0.29	+0.1
3,168,637	+		GFF3100	0.29	-0.8
3,168,643	+		GFF3100	0.29	+1.0
3,168,645	+		GFF3100	0.29	-0.9
3,168,650	-		GFF3100	0.30	+0.7
3,168,654	+		GFF3100	0.30	-0.2
3,168,654	+		GFF3100	0.30	-0.6
3,168,655	+		GFF3100	0.30	-0.3
3,168,659	+		GFF3100	0.30	+0.4
3,168,664	+		GFF3100	0.31	-1.8
3,168,692	+		GFF3100	0.32	-1.9
3,168,700	+		GFF3100	0.33	+0.2
3,168,702	+		GFF3100	0.33	-0.6
3,168,702	+		GFF3100	0.33	+0.1
3,168,702	+		GFF3100	0.33	-1.8
3,168,710	-		GFF3100	0.33	-0.3
3,168,733	+		GFF3100	0.35	+1.6
3,168,748	+		GFF3100	0.36	-1.3
3,168,770	+		GFF3100	0.37	+0.1
3,168,772	+		GFF3100	0.37	-0.0
3,168,772	+		GFF3100	0.37	-1.5
3,168,772	+		GFF3100	0.37	+1.0
3,168,772	+		GFF3100	0.37	+0.1
3,168,772	+		GFF3100	0.37	-1.2
3,168,772	+		GFF3100	0.37	+1.4
3,168,772	+		GFF3100	0.37	-0.8
3,168,778	-		GFF3100	0.38	+0.9
3,168,780	+		GFF3100	0.38	-1.6
3,168,780	-		GFF3100	0.38	-1.9
3,168,780	-		GFF3100	0.38	+1.1
3,168,780	-		GFF3100	0.38	-1.7
3,168,780	-		GFF3100	0.38	-0.8
3,168,780	-		GFF3100	0.38	-2.1
3,168,782	+		GFF3100	0.38	-0.6
3,168,802	+		GFF3100	0.39	-1.2
3,168,837	-		GFF3100	0.41	-1.5
3,168,889	-		GFF3100	0.44	+0.4
3,168,889	-		GFF3100	0.44	-0.2
3,168,911	-		GFF3100	0.46	+0.0
3,168,937	-		GFF3100	0.47	-1.3
3,168,956	-		GFF3100	0.48	-0.8
3,168,975	+		GFF3100	0.50	-0.6
3,168,983	-		GFF3100	0.50	+0.6
3,169,003	+		GFF3100	0.51	-0.3
3,169,012	+		GFF3100	0.52	+0.8
3,169,019	+		GFF3100	0.52	+1.5
3,169,025	-		GFF3100	0.53	-0.7
3,169,025	-		GFF3100	0.53	+1.1
3,169,047	-		GFF3100	0.54	+0.1
3,169,068	-		GFF3100	0.55	-0.9
3,169,073	-		GFF3100	0.56	-1.5
3,169,119	+		GFF3100	0.58	+0.8
3,169,119	+		GFF3100	0.58	-0.4
3,169,122	-		GFF3100	0.59	-0.8
3,169,124	+		GFF3100	0.59	-1.2
3,169,124	+		GFF3100	0.59	-0.4
3,169,124	+		GFF3100	0.59	+1.3
3,169,129	+		GFF3100	0.59	+0.7
3,169,132	-		GFF3100	0.59	-0.3
3,169,132	-		GFF3100	0.59	-0.9
3,169,136	+		GFF3100	0.59	+0.4
3,169,152	+		GFF3100	0.60	-0.3
3,169,162	-		GFF3100	0.61	-0.9
3,169,173	-		GFF3100	0.62	-0.3
3,169,173	-		GFF3100	0.62	+0.1
3,169,199	-		GFF3100	0.63	-1.1
3,169,219	-		GFF3100	0.64	-0.1
3,169,250	-		GFF3100	0.66	+0.9
3,169,255	-		GFF3100	0.67	-0.5
3,169,257	+		GFF3100	0.67	-0.7
3,169,259	-		GFF3100	0.67	+0.4
3,169,265	-		GFF3100	0.67	-1.1
3,169,265	-		GFF3100	0.67	+1.1
3,169,265	-		GFF3100	0.67	+1.1
3,169,312	-		GFF3100	0.70	-0.6
3,169,320	+		GFF3100	0.71	-0.0
3,169,320	+		GFF3100	0.71	-1.4
3,169,344	+		GFF3100	0.72	-0.9
3,169,344	+		GFF3100	0.72	-0.2
3,169,349	+		GFF3100	0.72	-1.1
3,169,352	-		GFF3100	0.73	-0.8
3,169,352	-		GFF3100	0.73	-0.7
3,169,355	+		GFF3100	0.73	-0.3
3,169,367	+		GFF3100	0.74	+0.3
3,169,375	-		GFF3100	0.74	-1.3
3,169,391	-		GFF3100	0.75	-1.2
3,169,391	-		GFF3100	0.75	+0.6
3,169,393	-		GFF3100	0.75	+0.1
3,169,429	+		GFF3100	0.77	-1.1
3,169,430	+		GFF3100	0.77	-0.7
3,169,437	+		GFF3100	0.78	+0.9
3,169,438	-		GFF3100	0.78	-0.5
3,169,438	-		GFF3100	0.78	+0.4
3,169,440	+		GFF3100	0.78	-1.3
3,169,440	+		GFF3100	0.78	-0.4
3,169,448	-		GFF3100	0.78	-2.0
3,169,455	-		GFF3100	0.79	+0.3
3,169,467	+		GFF3100	0.80	-1.4
3,169,472	-		GFF3100	0.80	+0.0
3,169,499	-		GFF3100	0.82	-0.7
3,169,504	-		GFF3100	0.82	-0.9
3,169,506	-		GFF3100	0.82	+1.6
3,169,559	+		GFF3100	0.85	-0.9
3,169,569	-		GFF3100	0.86	+0.1
3,169,572	-		GFF3100	0.86	-0.7
3,169,642	-				-1.3
3,169,642	-				-0.7
3,169,657	-				+0.1
3,169,679	+				-0.3
3,169,705	-				+0.4
3,169,715	-				-1.0
3,169,738	+				-0.9
3,169,743	+				-1.1
3,169,743	+				-1.3
3,169,751	-				-0.3
3,169,751	-				-0.9
3,169,751	-				-0.7
3,169,751	-				-0.8
3,169,751	-				+0.2
3,169,751	-				-0.6
3,169,751	-				-0.3
3,169,751	-				+1.6
3,169,753	+				+0.1
3,169,761	-				-0.6
3,169,781	-				-1.7
3,169,783	-				-0.4
3,169,785	+				-1.9
3,169,795	+				-2.6
3,169,795	+				+0.6
3,169,812	+				-0.9
3,169,812	+				-0.2
3,169,812	+				-0.9
3,169,819	+				-1.7
3,169,820	-				+0.4
3,169,822	+				-0.3
3,169,830	+				-0.3
3,169,830	+				+0.1
3,169,830	+				-1.4
3,169,830	+				-0.0
3,169,830	+				-0.9
3,169,830	+				-0.9
3,169,830	+				+0.2
3,169,830	+				+0.3
3,169,832	-				-1.5
3,169,832	-				-0.4
3,169,838	-				+0.4
3,169,838	-				+0.1
3,169,838	-				-0.7
3,169,838	-				-0.0
3,169,838	-				-0.3
3,169,838	-				-1.6
3,169,854	-				-0.6
3,169,854	-				-0.9
3,169,854	-				-2.0
3,169,854	-				-0.9
3,169,854	-				-1.3
3,169,856	-				-0.8
3,169,869	+				-1.4
3,169,869	+				-0.9
3,169,877	-				-0.6
3,169,882	+				-0.6
3,169,887	+				-1.1
3,169,895	-				-0.9
3,169,895	-				+0.0
3,169,895	-				-0.3
3,169,906	-				-1.0
3,169,906	-				-0.4
3,169,920	-		GFF3101	0.12	-1.2
3,169,920	-		GFF3101	0.12	-0.2
3,169,958	+		GFF3101	0.17	-1.5
3,169,965	+		GFF3101	0.18	+1.1
3,169,978	+		GFF3101	0.19	-0.6
3,169,978	+		GFF3101	0.19	-0.7
3,169,978	+		GFF3101	0.19	-0.2
3,169,978	+		GFF3101	0.19	+1.0
3,169,978	+		GFF3101	0.19	-0.9
3,169,986	-		GFF3101	0.20	+0.1
3,169,986	-		GFF3101	0.20	+0.6
3,169,988	+		GFF3101	0.21	-2.0
3,169,992	+		GFF3101	0.21	+0.2
3,169,996	-		GFF3101	0.22	+0.1
3,169,996	-		GFF3101	0.22	-0.6
3,170,000	-		GFF3101	0.22	-0.9
3,170,052	-		GFF3101	0.29	-0.6
3,170,052	-		GFF3101	0.29	-0.9
3,170,062	+		GFF3101	0.30	-1.2
3,170,069	+		GFF3101	0.31	-0.1
3,170,077	-		GFF3101	0.32	-1.0
3,170,077	-		GFF3101	0.32	+0.3
3,170,090	+		GFF3101	0.34	-0.7
3,170,156	+		GFF3101	0.43	+1.1
3,170,191	+		GFF3101	0.48	-0.3
3,170,207	-		GFF3101	0.50	+0.1
3,170,220	+		GFF3101	0.51	-0.8
3,170,220	+		GFF3101	0.51	-2.1
3,170,235	+		GFF3101	0.53	-1.6
3,170,244	+		GFF3101	0.55	-2.1
3,170,244	+		GFF3101	0.55	-0.2
3,170,247	-		GFF3101	0.55	-1.1
3,170,247	-		GFF3101	0.55	-0.6
3,170,252	-		GFF3101	0.56	-2.0
3,170,252	-		GFF3101	0.56	-0.8
3,170,258	+		GFF3101	0.56	+1.1
3,170,274	-		GFF3101	0.59	-1.2
3,170,279	-		GFF3101	0.59	-1.8
3,170,284	-		GFF3101	0.60	+0.4
3,170,295	+		GFF3101	0.61	-1.7
3,170,385	+		GFF3101	0.73	-0.8
3,170,385	+		GFF3101	0.73	-0.6
3,170,393	-		GFF3101	0.74	-1.0
3,170,393	-		GFF3101	0.74	-0.1
3,170,393	-		GFF3101	0.74	-0.3
3,170,403	+		GFF3101	0.76	-0.1
3,170,406	+		GFF3101	0.76	-1.2
3,170,406	-		GFF3101	0.76	-2.2
3,170,413	+		GFF3101	0.77	+0.4
3,170,441	+		GFF3101	0.81	-0.6
3,170,449	-		GFF3101	0.82	-0.1
3,170,449	-		GFF3101	0.82	-0.9
3,170,451	+		GFF3101	0.82	-1.0
3,170,454	-		GFF3101	0.82	-2.1
3,170,459	-		GFF3101	0.83	+0.4
3,170,520	-				-0.3
3,170,554	-				+0.4
3,170,575	+				-1.2
3,170,575	+				-1.5
3,170,575	+				-0.6
3,170,592	+				+0.7
3,170,628	+				-1.6
3,170,628	+				-0.5
3,170,628	+				+0.7
3,170,687	+				-1.4
3,170,724	+				+1.1
3,170,724	+				-1.6
3,170,729	+				-0.9
3,170,729	+				-0.8
3,170,732	-				-0.4
3,170,732	-				+0.3
3,170,732	-				-0.3
3,170,749	+				-1.9
3,170,755	+				-0.8
3,170,763	-		GFF3102	0.11	-0.4
3,170,763	-		GFF3102	0.11	-1.7
3,170,782	-		GFF3102	0.13	-1.9