Strain Fitness in Sphingobium sp. HT1-2 around GFF3045

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,121,109	+				+0.6
3,121,117	-				-1.1
3,121,140	+				-0.7
3,121,143	+				-0.8
3,121,159	-				+0.2
3,121,168	-				+1.6
3,121,178	-				-0.0
3,121,201	-				-0.6
3,121,201	-				+1.2
3,121,201	-				+0.9
3,121,248	-				-0.1
3,121,265	-				-0.5
3,121,414	+				-1.3
3,121,422	-		GFF3044	0.11	-1.8
3,121,432	-		GFF3044	0.12	-1.2
3,121,447	-		GFF3044	0.14	-0.5
3,121,449	-		GFF3044	0.15	-0.3
3,121,528	+		GFF3044	0.26	-0.3
3,121,528	+		GFF3044	0.26	+2.0
3,121,529	-		GFF3044	0.26	-0.9
3,121,529	-		GFF3044	0.26	-1.9
3,121,530	+		GFF3044	0.27	+1.7
3,121,538	-		GFF3044	0.28	-0.9
3,121,586	+		GFF3044	0.35	+1.0
3,121,607	+		GFF3044	0.38	-0.2
3,121,704	-		GFF3044	0.53	-1.1
3,121,754	+		GFF3044	0.60	-0.4
3,121,754	+		GFF3044	0.60	+0.2
3,121,754	+		GFF3044	0.60	-1.5
3,121,764	+		GFF3044	0.61	+1.5
3,121,772	-		GFF3044	0.63	+0.8
3,121,772	-		GFF3044	0.63	-0.8
3,121,772	-		GFF3044	0.63	-0.1
3,121,772	-		GFF3044	0.63	-0.8
3,121,772	-		GFF3044	0.63	-0.4
3,121,790	+		GFF3044	0.65	-0.8
3,121,818	+		GFF3044	0.69	+0.2
3,121,828	+		GFF3044	0.71	+0.2
3,121,835	+		GFF3044	0.72	+0.6
3,121,844	+		GFF3044	0.73	-0.3
3,121,862	-		GFF3044	0.76	-1.1
3,121,864	+		GFF3044	0.76	-0.8
3,121,930	-		GFF3044	0.86	+1.9
3,121,973	-				+0.8
3,122,016	+				-1.3
3,122,016	-				-0.5
3,122,034	-				-0.3
3,122,039	+				+0.1
3,122,050	-				-2.4
3,122,056	+				-0.8
3,122,059	-				-0.8
3,122,059	-				-1.5
3,122,059	-				-0.8
3,122,068	+				-0.4
3,122,099	-				-0.8
3,122,155	-		GFF3045	0.10	-0.7
3,122,156	+		GFF3045	0.11	-0.3
3,122,158	+		GFF3045	0.11	-0.3
3,122,158	+		GFF3045	0.11	-0.5
3,122,158	+		GFF3045	0.11	-0.7
3,122,158	+		GFF3045	0.11	-0.4
3,122,158	+		GFF3045	0.11	-1.8
3,122,163	+		GFF3045	0.12	-1.9
3,122,166	-		GFF3045	0.12	-1.3
3,122,166	-		GFF3045	0.12	-1.7
3,122,166	-		GFF3045	0.12	-1.4
3,122,205	+		GFF3045	0.20	-1.2
3,122,213	-		GFF3045	0.22	-0.0
3,122,213	-		GFF3045	0.22	-1.0
3,122,213	-		GFF3045	0.22	-0.5
3,122,213	-		GFF3045	0.22	-0.4
3,122,215	+		GFF3045	0.22	+1.3
3,122,215	+		GFF3045	0.22	-0.3
3,122,220	+		GFF3045	0.23	+0.7
3,122,223	-		GFF3045	0.24	-0.2
3,122,223	-		GFF3045	0.24	+1.3
3,122,223	-		GFF3045	0.24	-0.5
3,122,233	-		GFF3045	0.26	-0.8
3,122,262	+		GFF3045	0.32	-1.0
3,122,267	+		GFF3045	0.33	-0.7
3,122,270	-		GFF3045	0.33	-0.2
3,122,272	+		GFF3045	0.34	-0.4
3,122,272	+		GFF3045	0.34	+0.3
3,122,277	+		GFF3045	0.35	-1.2
3,122,277	+		GFF3045	0.35	-0.8
3,122,277	+		GFF3045	0.35	+0.2
3,122,279	-		GFF3045	0.35	-1.4
3,122,284	+		GFF3045	0.36	-1.5
3,122,285	-		GFF3045	0.36	+1.2
3,122,354	+		GFF3045	0.50	-0.8
3,122,354	+		GFF3045	0.50	+0.3
3,122,369	+		GFF3045	0.53	-1.4
3,122,369	+		GFF3045	0.53	+1.0
3,122,377	-		GFF3045	0.54	+1.2
3,122,397	-		GFF3045	0.58	-0.5
3,122,400	+		GFF3045	0.59	+0.2
3,122,449	+		GFF3045	0.69	-1.1
3,122,495	+		GFF3045	0.78	+0.3
3,122,536	+		GFF3045	0.86	+0.3
3,122,536	+		GFF3045	0.86	-0.5
3,122,536	+		GFF3045	0.86	-0.7
3,122,536	+		GFF3045	0.86	-1.1
3,122,544	-		GFF3045	0.88	-1.8
3,122,544	-		GFF3045	0.88	+0.5
3,122,551	+		GFF3045	0.89	-0.3
3,122,551	+		GFF3045	0.89	+0.2
3,122,573	+				-0.5
3,122,602	+				+1.2
3,122,631	-				+0.8
3,122,638	+				-0.6
3,122,688	+				-0.4
3,122,696	-				+1.3
3,122,696	-				+0.5
3,122,705	+				+1.0
3,122,710	+				-1.5
3,122,718	-				+0.1
3,122,739	-				-0.9
3,122,749	+				+0.1
3,122,752	+				-2.1
3,122,765	-				+1.2
3,122,771	+				-0.3
3,122,782	+				+0.1
3,122,782	+				-2.7
3,122,787	+				-0.3
3,122,817	+				-1.4
3,122,833	+				-0.1
3,122,836	-				-0.7
3,122,836	-				-0.4
3,122,855	+		GFF3046	0.11	+0.5
3,122,872	-		GFF3046	0.13	-1.5
3,122,885	+		GFF3046	0.14	-1.4
3,122,894	-		GFF3046	0.16	-1.5
3,122,895	+		GFF3046	0.16	-0.5
3,122,908	-		GFF3046	0.17	+0.6
3,122,908	-		GFF3046	0.17	+0.5
3,122,921	+		GFF3046	0.19	-1.2
3,122,980	+		GFF3046	0.26	-1.9
3,122,981	+		GFF3046	0.26	-0.3
3,122,981	+		GFF3046	0.26	-0.4
3,122,981	+		GFF3046	0.26	-0.8
3,122,981	+		GFF3046	0.26	+0.7
3,122,989	-		GFF3046	0.27	-1.3
3,122,989	-		GFF3046	0.27	+0.3
3,122,989	-		GFF3046	0.27	-0.0
3,122,989	-		GFF3046	0.27	+0.2
3,122,989	-		GFF3046	0.27	-0.7
3,122,989	-		GFF3046	0.27	-1.8
3,122,989	-		GFF3046	0.27	-1.1
3,123,006	+		GFF3046	0.29	+0.3
3,123,013	+		GFF3046	0.30	+1.3
3,123,013	+		GFF3046	0.30	-0.8
3,123,013	+		GFF3046	0.30	-0.9
3,123,013	+		GFF3046	0.30	+0.3
3,123,013	+		GFF3046	0.30	+0.2
3,123,013	+		GFF3046	0.30	-3.3
3,123,021	-		GFF3046	0.31	-2.5
3,123,021	-		GFF3046	0.31	-0.3
3,123,031	-		GFF3046	0.32	-0.3
3,123,031	-		GFF3046	0.32	-0.6
3,123,046	+		GFF3046	0.34	+0.8
3,123,046	+		GFF3046	0.34	+0.6
3,123,046	+		GFF3046	0.34	+1.7
3,123,046	+		GFF3046	0.34	-1.7
3,123,053	-		GFF3046	0.35	-0.3
3,123,054	-		GFF3046	0.35	-0.6
3,123,054	-		GFF3046	0.35	+0.2
3,123,054	-		GFF3046	0.35	-1.5
3,123,057	+		GFF3046	0.36	+0.5
3,123,057	+		GFF3046	0.36	-0.4
3,123,065	-		GFF3046	0.37	-1.0
3,123,078	-		GFF3046	0.38	-1.5
3,123,092	+		GFF3046	0.40	-0.6
3,123,100	-		GFF3046	0.41	-0.8
3,123,130	-		GFF3046	0.44	-0.2
3,123,143	+		GFF3046	0.46	+1.2
3,123,164	+		GFF3046	0.49	-0.2
3,123,183	-		GFF3046	0.51	+0.4
3,123,183	-		GFF3046	0.51	-0.2
3,123,196	+		GFF3046	0.53	-1.2
3,123,202	+		GFF3046	0.53	-1.6
3,123,202	+		GFF3046	0.53	-0.9
3,123,204	-		GFF3046	0.54	-1.2
3,123,204	-		GFF3046	0.54	-1.2
3,123,204	-		GFF3046	0.54	-1.7
3,123,220	-		GFF3046	0.56	+0.7
3,123,225	-		GFF3046	0.56	-0.7
3,123,237	+		GFF3046	0.58	-0.0
3,123,275	+		GFF3046	0.62	-0.8
3,123,276	+		GFF3046	0.62	+0.4
3,123,293	-		GFF3046	0.64	-0.3
3,123,299	+		GFF3046	0.65	-0.3
3,123,307	+		GFF3046	0.66	+0.7
3,123,317	+		GFF3046	0.67	-0.2
3,123,330	+		GFF3046	0.69	-0.0
3,123,361	+		GFF3046	0.73	-0.3
3,123,364	+		GFF3046	0.73	+0.0
3,123,384	-		GFF3046	0.76	-1.5
3,123,403	-		GFF3046	0.78	-1.3
3,123,436	+		GFF3046	0.82	+0.8
3,123,441	+		GFF3046	0.83	-1.8
3,123,441	+		GFF3046	0.83	-0.8
3,123,441	+		GFF3046	0.83	-0.0
3,123,449	-		GFF3046	0.84	+0.3
3,123,449	-		GFF3046	0.84	+0.7
3,123,449	-		GFF3046	0.84	-1.0
3,123,460	-		GFF3046	0.85	-0.2
3,123,473	+		GFF3046	0.87	-0.1
3,123,506	-				-2.2
3,123,536	+				+1.4
3,123,536	+				+0.7
3,123,544	-				-1.4
3,123,544	-				-0.3
3,123,549	-				-0.8
3,123,559	+				+0.2
3,123,581	+				+0.5
3,123,581	+				+0.6
3,123,581	+				+1.2
3,123,589	-				-0.1
3,123,589	-				+0.1