Strain Fitness in Sphingobium sp. HT1-2 around GFF2937

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,007,971	-		GFF2935	0.59	-0.8
3,007,995	+		GFF2935	0.61	-1.4
3,008,005	+		GFF2935	0.61	-1.2
3,008,010	+		GFF2935	0.62	-0.8
3,008,012	-		GFF2935	0.62	+0.5
3,008,013	-		GFF2935	0.62	-0.6
3,008,086	+		GFF2935	0.67	-0.6
3,008,133	-		GFF2935	0.70	-1.0
3,008,151	+		GFF2935	0.71	-0.8
3,008,151	-		GFF2935	0.71	-0.0
3,008,155	+		GFF2935	0.71	-0.7
3,008,155	+		GFF2935	0.71	+0.9
3,008,155	+		GFF2935	0.71	+1.4
3,008,155	+		GFF2935	0.71	-0.0
3,008,155	+		GFF2935	0.71	-0.4
3,008,159	-		GFF2935	0.71	-0.2
3,008,163	-		GFF2935	0.71	-0.8
3,008,163	-		GFF2935	0.71	-0.8
3,008,163	-		GFF2935	0.71	+0.8
3,008,163	-		GFF2935	0.71	-0.5
3,008,163	-		GFF2935	0.71	+0.6
3,008,163	-		GFF2935	0.71	-0.4
3,008,179	+		GFF2935	0.73	+0.3
3,008,187	-		GFF2935	0.73	-2.2
3,008,194	+		GFF2935	0.73	+0.1
3,008,194	+		GFF2935	0.73	-0.7
3,008,194	+		GFF2935	0.73	+0.1
3,008,194	+		GFF2935	0.73	-0.2
3,008,194	+		GFF2935	0.73	-0.4
3,008,194	+		GFF2935	0.73	-1.9
3,008,202	-		GFF2935	0.74	-1.0
3,008,202	-		GFF2935	0.74	-0.5
3,008,202	-		GFF2935	0.74	-1.3
3,008,204	+		GFF2935	0.74	-0.7
3,008,204	+		GFF2935	0.74	-0.4
3,008,213	+		GFF2935	0.75	-0.9
3,008,214	+		GFF2935	0.75	-2.3
3,008,214	+		GFF2935	0.75	-1.6
3,008,238	+		GFF2935	0.76	+0.5
3,008,243	+		GFF2935	0.77	+0.5
3,008,243	+		GFF2935	0.77	-1.4
3,008,243	+		GFF2935	0.77	-1.5
3,008,246	-		GFF2935	0.77	-0.8
3,008,270	+		GFF2935	0.78	+1.3
3,008,270	+		GFF2935	0.78	-1.2
3,008,275	+		GFF2935	0.79	-0.5
3,008,275	+		GFF2935	0.79	-0.6
3,008,278	-		GFF2935	0.79	-0.1
3,008,278	-		GFF2935	0.79	-0.8
3,008,278	-		GFF2935	0.79	-0.3
3,008,278	-		GFF2935	0.79	-1.4
3,008,278	-		GFF2935	0.79	+0.5
3,008,278	-		GFF2935	0.79	+0.2
3,008,278	-		GFF2935	0.79	-1.5
3,008,280	+		GFF2935	0.79	-1.1
3,008,283	-		GFF2935	0.79	-0.8
3,008,283	-		GFF2935	0.79	+1.1
3,008,283	-		GFF2935	0.79	-1.2
3,008,283	-		GFF2935	0.79	-0.7
3,008,293	+		GFF2935	0.80	-0.9
3,008,293	+		GFF2935	0.80	-0.3
3,008,293	-		GFF2935	0.80	-0.8
3,008,299	+		GFF2935	0.80	+0.4
3,008,306	+		GFF2935	0.81	-0.0
3,008,307	-		GFF2935	0.81	-0.8
3,008,313	-		GFF2935	0.81	+0.3
3,008,314	-		GFF2935	0.81	-1.8
3,008,325	+		GFF2935	0.82	+0.5
3,008,344	-		GFF2935	0.83	+0.0
3,008,353	+		GFF2935	0.84	+0.6
3,008,355	+		GFF2935	0.84	-0.9
3,008,392	+		GFF2935	0.86	+0.3
3,008,392	+		GFF2935	0.86	-0.1
3,008,392	+		GFF2935	0.86	-1.4
3,008,392	+		GFF2935	0.86	-1.7
3,008,392	+		GFF2935	0.86	-0.9
3,008,400	-		GFF2935	0.87	-1.3
3,008,400	-		GFF2935	0.87	+1.6
3,008,429	+		GFF2935	0.89	+0.8
3,008,461	-				-0.2
3,008,476	-				-0.0
3,008,477	-				-1.5
3,008,485	+				-0.5
3,008,490	+				-1.0
3,008,490	+				-1.0
3,008,491	-				-1.3
3,008,500	+				-0.3
3,008,510	+				-0.7
3,008,529	+				-0.2
3,008,556	+				-0.9
3,008,563	-				-0.5
3,008,590	-				+0.7
3,008,590	-				+1.1
3,008,590	-				-0.2
3,008,590	-				+0.0
3,008,590	-				-0.5
3,008,598	-				-0.6
3,008,603	+				+0.4
3,008,603	+				-1.2
3,008,603	+				-1.5
3,008,603	+				+1.3
3,008,603	+				+0.2
3,008,603	+				-0.9
3,008,605	+				+1.1
3,008,611	-				-1.9
3,008,611	-				+1.0
3,008,611	-				+0.4
3,008,613	+				-0.3
3,008,618	+				-0.2
3,008,618	+				-0.9
3,008,671	-		GFF2936	0.19	+2.3
3,008,693	+		GFF2936	0.25	-0.9
3,008,693	+		GFF2936	0.25	-0.8
3,008,693	+		GFF2936	0.25	-1.7
3,008,693	+		GFF2936	0.25	-1.8
3,008,693	+		GFF2936	0.25	-0.7
3,008,693	+		GFF2936	0.25	-0.3
3,008,693	+		GFF2936	0.25	-0.1
3,008,693	+		GFF2936	0.25	-0.1
3,008,696	-		GFF2936	0.26	-1.9
3,008,701	-		GFF2936	0.28	-2.1
3,008,701	-		GFF2936	0.28	-0.7
3,008,701	-		GFF2936	0.28	-2.0
3,008,701	-		GFF2936	0.28	-0.6
3,008,701	-		GFF2936	0.28	-0.0
3,008,701	-		GFF2936	0.28	+0.8
3,008,701	-		GFF2936	0.28	+0.1
3,008,701	-		GFF2936	0.28	+1.6
3,008,701	-		GFF2936	0.28	+0.3
3,008,708	+		GFF2936	0.29	-0.3
3,008,708	+		GFF2936	0.29	+0.7
3,008,716	-		GFF2936	0.32	-0.4
3,008,716	-		GFF2936	0.32	-0.9
3,008,716	-		GFF2936	0.32	-1.9
3,008,716	-		GFF2936	0.32	+1.2
3,008,716	-		GFF2936	0.32	-1.0
3,008,723	-		GFF2936	0.34	+0.2
3,008,723	-		GFF2936	0.34	-1.2
3,008,748	-		GFF2936	0.41	-0.5
3,008,748	-		GFF2936	0.41	-0.5
3,008,748	-		GFF2936	0.41	+0.5
3,008,748	-		GFF2936	0.41	-0.3
3,008,754	+		GFF2936	0.42	-0.0
3,008,773	+		GFF2936	0.47	-0.1
3,008,773	+		GFF2936	0.47	-0.1
3,008,806	+		GFF2936	0.57	-0.1
3,008,813	-		GFF2936	0.59	+0.4
3,008,827	+		GFF2936	0.62	-0.6
3,008,852	-		GFF2936	0.69	+0.3
3,008,862	+		GFF2936	0.72	-0.3
3,008,909	+		GFF2936	0.85	-0.0
3,008,909	+		GFF2936	0.85	-0.4
3,008,914	+		GFF2936	0.87	-1.0
3,008,914	+		GFF2936	0.87	-1.6
3,008,914	+		GFF2936	0.87	-1.5
3,008,914	+		GFF2936	0.87	-0.4
3,008,917	-		GFF2936	0.88	-1.3
3,008,917	-		GFF2936	0.88	+0.6
3,008,917	-		GFF2936	0.88	-0.5
3,008,919	+		GFF2936	0.88	+0.6
3,008,919	+		GFF2936	0.88	-0.7
3,008,922	-		GFF2936	0.89	-0.0
3,008,922	-		GFF2936	0.89	+1.1
3,008,922	-		GFF2936	0.89	-1.9
3,008,922	-		GFF2936	0.89	-0.9
3,008,927	-				-1.0
3,008,927	-				+0.2
3,008,941	-				-0.7
3,008,952	+				-1.0
3,008,952	+				-1.1
3,008,952	+				-0.3
3,008,952	+				-1.6
3,008,952	+				-0.7
3,008,952	+				-0.4
3,008,952	+				-0.4
3,008,952	+				-1.0
3,008,960	-				-0.8
3,008,960	-				-2.0
3,008,960	-				-0.3
3,008,960	-				-0.5
3,008,960	-				-1.9
3,008,960	-				-0.3
3,008,963	+				+0.1
3,008,965	-				-1.1
3,008,974	+				+0.6
3,008,979	+				-0.4
3,008,982	+				-2.2
3,009,039	+		GFF2937	0.14	-1.3
3,009,042	-		GFF2937	0.14	-1.4
3,009,043	-		GFF2937	0.14	+0.6
3,009,072	+		GFF2937	0.19	-1.2
3,009,078	+		GFF2937	0.20	-1.2
3,009,078	+		GFF2937	0.20	-0.7
3,009,086	-		GFF2937	0.21	-1.5
3,009,086	-		GFF2937	0.21	+1.3
3,009,091	+		GFF2937	0.22	-1.3
3,009,101	-		GFF2937	0.24	-1.9
3,009,148	-		GFF2937	0.31	-1.4
3,009,148	-		GFF2937	0.31	-1.3
3,009,149	+		GFF2937	0.31	+0.2
3,009,150	+		GFF2937	0.32	-0.6
3,009,156	+		GFF2937	0.33	-0.8
3,009,156	+		GFF2937	0.33	-1.1
3,009,158	-		GFF2937	0.33	+1.7
3,009,158	-		GFF2937	0.33	+1.0
3,009,159	-		GFF2937	0.33	+0.7
3,009,161	+		GFF2937	0.33	+0.6
3,009,164	-		GFF2937	0.34	-0.8
3,009,164	-		GFF2937	0.34	+0.9
3,009,223	-		GFF2937	0.43	-1.0
3,009,223	-		GFF2937	0.43	-0.5
3,009,225	+		GFF2937	0.44	-0.8
3,009,245	+		GFF2937	0.47	-0.9
3,009,254	+		GFF2937	0.48	-0.8
3,009,254	+		GFF2937	0.48	-0.9
3,009,254	+		GFF2937	0.48	-0.1
3,009,254	+		GFF2937	0.48	-0.7
3,009,256	+		GFF2937	0.49	+0.7
3,009,262	-		GFF2937	0.50	-1.4
3,009,262	-		GFF2937	0.50	-1.6
3,009,262	-		GFF2937	0.50	+0.6
3,009,262	-		GFF2937	0.50	-0.7
3,009,262	-		GFF2937	0.50	+0.8
3,009,282	+		GFF2937	0.53	-0.0
3,009,287	-		GFF2937	0.54	-0.4
3,009,304	+		GFF2937	0.56	+1.1
3,009,312	-		GFF2937	0.58	-2.6
3,009,313	-		GFF2937	0.58	+0.4
3,009,315	+		GFF2937	0.58	-0.8
3,009,327	-		GFF2937	0.60	+0.9
3,009,330	+		GFF2937	0.61	+0.2
3,009,330	+		GFF2937	0.61	-0.3
3,009,330	+		GFF2937	0.61	-1.2
3,009,330	+		GFF2937	0.61	-1.2
3,009,335	+		GFF2937	0.61	-1.3
3,009,338	-		GFF2937	0.62	+1.0
3,009,338	-		GFF2937	0.62	-0.1
3,009,338	-		GFF2937	0.62	+0.9
3,009,338	-		GFF2937	0.62	-1.9
3,009,338	-		GFF2937	0.62	+0.5
3,009,340	+		GFF2937	0.62	-1.8
3,009,340	+		GFF2937	0.62	+0.5
3,009,340	+		GFF2937	0.62	+0.2
3,009,343	-		GFF2937	0.63	-0.8
3,009,352	-		GFF2937	0.64	-0.3
3,009,358	+		GFF2937	0.65	-1.1
3,009,361	-		GFF2937	0.66	-1.2
3,009,369	+		GFF2937	0.67	+0.1
3,009,392	-		GFF2937	0.71	+0.2
3,009,413	-		GFF2937	0.74	+0.5
3,009,415	+		GFF2937	0.74	-0.9
3,009,423	-		GFF2937	0.76	+0.4
3,009,423	-		GFF2937	0.76	-1.8
3,009,423	-		GFF2937	0.76	-0.7
3,009,424	-		GFF2937	0.76	-0.4
3,009,438	+		GFF2937	0.78	-0.3
3,009,467	-		GFF2937	0.83	-2.0
3,009,474	-		GFF2937	0.84	-0.7
3,009,562	+				+1.3
3,009,575	-				+0.5
3,009,575	-				-0.3
3,009,576	+				-0.4
3,009,576	+				-0.2
3,009,593	+				-0.2
3,009,713	+		GFF2938	0.25	-1.5
3,009,713	+		GFF2938	0.25	-1.1
3,009,713	+		GFF2938	0.25	-1.5
3,009,721	-		GFF2938	0.26	-0.4
3,009,747	+		GFF2938	0.31	-1.6
3,009,749	+		GFF2938	0.31	-0.0
3,009,757	-		GFF2938	0.32	-0.1
3,009,762	-		GFF2938	0.33	+0.5
3,009,768	-		GFF2938	0.34	+1.2
3,009,770	+		GFF2938	0.35	-0.4
3,009,770	+		GFF2938	0.35	+0.6
3,009,776	+		GFF2938	0.36	+0.3
3,009,778	-		GFF2938	0.36	-0.2
3,009,778	-		GFF2938	0.36	+0.1
3,009,790	-		GFF2938	0.38	+0.5
3,009,833	+		GFF2938	0.45	+0.9
3,009,833	+		GFF2938	0.45	+0.5
3,009,833	+		GFF2938	0.45	+0.6
3,009,841	-		GFF2938	0.46	+0.6
3,009,850	-		GFF2938	0.48	-0.0
3,009,857	+		GFF2938	0.49	-0.2
3,009,857	+		GFF2938	0.49	-1.6
3,009,857	+		GFF2938	0.49	-0.9
3,009,858	-		GFF2938	0.49	-0.3
3,009,860	-		GFF2938	0.50	-1.5
3,009,860	-		GFF2938	0.50	+0.9
3,009,865	-		GFF2938	0.50	+0.6
3,009,909	+		GFF2938	0.58	-1.6
3,009,917	-		GFF2938	0.59	-0.8
3,009,929	+		GFF2938	0.61	-0.0
3,009,960	-		GFF2938	0.66	+0.5
3,009,985	+		GFF2938	0.71	+0.1
3,009,994	+		GFF2938	0.72	+0.3
3,010,032	-		GFF2938	0.78	+0.2
3,010,069	+		GFF2938	0.85	-0.4
3,010,077	-		GFF2938	0.86	-0.3
3,010,100	+		GFF2938	0.90	+0.3
3,010,110	+				-1.4
3,010,115	-				-2.1
3,010,131	+				+1.6
3,010,131	+				-0.5
3,010,150	+				-1.3
3,010,150	+				+0.3
3,010,295	+				-1.1
3,010,301	+				-0.3
3,010,301	+				-0.0
3,010,303	-				-0.0
3,010,306	+				-0.5
3,010,317	-				-0.1
3,010,341	+				-1.0
3,010,341	+				+0.5
3,010,342	-				-1.1
3,010,346	+				+0.4
3,010,349	-				-0.5
3,010,354	-				-2.1
3,010,354	-				-0.7
3,010,354	-				+1.7
3,010,356	+				-1.8
3,010,359	+				-0.8
3,010,359	-				-0.8
3,010,364	-				-1.2
3,010,379	-				+0.5
3,010,404	+		GFF2939	0.26	+0.1
3,010,404	+		GFF2939	0.26	+1.7
3,010,404	+		GFF2939	0.26	-0.4
3,010,412	-		GFF2939	0.32	-0.2
3,010,460	+		GFF2939	0.74	-0.1
3,010,460	+		GFF2939	0.74	-0.5
3,010,468	-		GFF2939	0.80	-1.4
3,010,468	-		GFF2939	0.80	+0.3
3,010,468	-		GFF2939	0.80	-0.3
3,010,468	-		GFF2939	0.80	-0.7
3,010,468	-		GFF2939	0.80	+0.1
3,010,468	-		GFF2939	0.80	-0.3
3,010,468	-		GFF2939	0.80	-0.8
3,010,471	+		GFF2939	0.83	-0.9
3,010,483	+				-0.4
3,010,484	+				-1.3
3,010,484	+				-0.5
3,010,484	+				+0.5
3,010,484	+				-0.9
3,010,484	+				-0.8
3,010,484	+				-2.7
3,010,484	+				-1.0
3,010,484	+				-1.1
3,010,484	+				-0.5
3,010,484	+				+0.7
3,010,484	+				-0.2
3,010,484	+				-1.7
3,010,484	+				-1.4
3,010,484	+				+1.6
3,010,484	+				-0.5
3,010,484	+				-1.4
3,010,484	+				-0.3
3,010,484	+				-0.6
3,010,484	+				-0.6
3,010,484	+				-0.0
3,010,484	+				-2.1
3,010,484	+				-2.5
3,010,484	+				-1.9
3,010,484	+				-1.8
3,010,484	+				+0.0
3,010,484	+				+1.4
3,010,484	+				-0.4
3,010,484	+				+0.5
3,010,484	+				-0.7
3,010,484	+				-1.3
3,010,484	+				+0.7
3,010,484	+				+0.1
3,010,484	+				+0.5
3,010,484	+				+0.2
3,010,492	-				-0.7
3,010,492	-				-1.8
3,010,492	-				-0.4
3,010,492	-				+0.1
3,010,492	-				+0.4
3,010,492	-				+0.1
3,010,492	-				-1.4
3,010,492	-				+0.4
3,010,492	-				-1.0
3,010,492	-				+0.3
3,010,492	-				-1.0
3,010,492	-				+0.1
3,010,492	-				-0.0
3,010,492	-				-1.0
3,010,492	-				-1.0
3,010,492	-				+0.4
3,010,492	-				-0.4
3,010,492	-				-0.6
3,010,492	-				+0.2
3,010,492	-				+0.1
3,010,492	-				-1.3
3,010,492	-				+0.6
3,010,492	-				-0.6
3,010,492	-				-0.9
3,010,492	-				-0.4
3,010,492	-				-0.4
3,010,492	-				-1.1
3,010,492	-				+0.3
3,010,492	-				-1.3
3,010,492	-				+0.3
3,010,492	-				-2.2
3,010,492	-				+0.1
3,010,492	-				+0.5
3,010,492	-				-0.1
3,010,492	-				-0.9
3,010,492	-				-1.1
3,010,492	-				-0.2
3,010,494	+				-0.5
3,010,494	+				+0.5
3,010,502	-				-0.0
3,010,502	-				-1.3
3,010,516	-				+0.4
3,010,526	-				-0.4
3,010,526	-				-0.0
3,010,539	+				+0.9
3,010,545	+				-1.1
3,010,553	-				-0.7
3,010,561	-				+0.4
3,010,561	-				-1.6