Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF292 and GFF293 are separated by 572 nucleotides GFF293 and GFF294 are separated by 1 nucleotides
GFF292 - hypothetical protein, at 287,248 to 291,075
GFF292
GFF293 - hypothetical protein, at 291,648 to 292,004
GFF293
GFF294 - Phage tail fiber protein, at 292,006 to 293,559
GFF294
Position (kb) 291
292
293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 290.648 kb on + strand, within GFF292 at 290.651 kb on - strand, within GFF292 at 290.656 kb on + strand, within GFF292 at 290.677 kb on + strand, within GFF292 at 290.687 kb on + strand, within GFF292 at 290.687 kb on + strand, within GFF292 at 290.692 kb on + strand, within GFF292 at 290.695 kb on - strand at 290.695 kb on - strand at 290.695 kb on - strand at 290.697 kb on + strand at 290.705 kb on - strand at 290.705 kb on - strand at 290.705 kb on - strand at 290.730 kb on + strand at 290.731 kb on + strand at 290.738 kb on - strand at 290.738 kb on - strand at 290.739 kb on - strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.771 kb on + strand at 290.779 kb on - strand at 290.779 kb on - strand at 290.779 kb on - strand at 290.779 kb on - strand at 290.781 kb on + strand at 290.781 kb on + strand at 290.781 kb on + strand at 290.782 kb on + strand at 290.782 kb on + strand at 290.789 kb on - strand at 290.789 kb on - strand at 290.789 kb on - strand at 290.789 kb on - strand at 290.790 kb on - strand at 290.790 kb on - strand at 290.792 kb on + strand at 290.792 kb on + strand at 290.797 kb on + strand at 290.797 kb on - strand at 290.799 kb on + strand at 290.800 kb on - strand at 290.800 kb on - strand at 290.805 kb on - strand at 290.823 kb on - strand at 290.841 kb on + strand at 290.841 kb on + strand at 290.841 kb on + strand at 290.841 kb on + strand at 290.841 kb on + strand at 290.841 kb on + strand at 290.859 kb on - strand at 290.859 kb on - strand at 290.869 kb on - strand at 290.883 kb on + strand at 290.883 kb on + strand at 290.884 kb on + strand at 290.891 kb on - strand at 290.894 kb on + strand at 290.894 kb on + strand at 290.897 kb on - strand at 290.902 kb on - strand at 290.907 kb on + strand at 290.916 kb on + strand at 290.916 kb on + strand at 290.924 kb on - strand at 290.936 kb on - strand at 290.945 kb on - strand at 290.945 kb on - strand at 290.952 kb on - strand at 290.961 kb on - strand at 290.961 kb on - strand at 291.011 kb on + strand at 291.213 kb on - strand at 291.324 kb on + strand at 291.324 kb on + strand at 291.332 kb on - strand at 291.332 kb on - strand at 291.332 kb on - strand at 291.446 kb on + strand at 291.509 kb on + strand at 291.514 kb on + strand at 291.554 kb on - strand at 291.556 kb on + strand at 291.556 kb on + strand at 291.556 kb on - strand at 291.564 kb on - strand at 291.651 kb on + strand at 291.687 kb on - strand, within GFF293 at 291.782 kb on - strand, within GFF293 at 291.811 kb on + strand, within GFF293 at 291.873 kb on + strand, within GFF293 at 291.918 kb on + strand, within GFF293 at 291.925 kb on - strand, within GFF293 at 291.965 kb on - strand, within GFF293 at 291.994 kb on + strand at 291.994 kb on + strand at 292.002 kb on - strand at 292.002 kb on - strand at 292.010 kb on + strand at 292.068 kb on - strand at 292.082 kb on + strand at 292.101 kb on + strand at 292.109 kb on - strand at 292.109 kb on - strand at 292.109 kb on - strand at 292.119 kb on + strand at 292.119 kb on + strand at 292.119 kb on + strand at 292.127 kb on - strand at 292.132 kb on - strand at 292.141 kb on + strand at 292.150 kb on - strand at 292.155 kb on - strand at 292.183 kb on + strand, within GFF294 at 292.189 kb on - strand, within GFF294 at 292.191 kb on - strand, within GFF294 at 292.213 kb on + strand, within GFF294 at 292.221 kb on - strand, within GFF294 at 292.248 kb on - strand, within GFF294 at 292.248 kb on - strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.249 kb on + strand, within GFF294 at 292.254 kb on + strand, within GFF294 at 292.258 kb on - strand, within GFF294 at 292.282 kb on + strand, within GFF294 at 292.282 kb on + strand, within GFF294 at 292.282 kb on + strand, within GFF294 at 292.282 kb on + strand, within GFF294 at 292.282 kb on + strand, within GFF294 at 292.282 kb on + strand, within GFF294 at 292.283 kb on + strand, within GFF294 at 292.290 kb on + strand, within GFF294 at 292.290 kb on + strand, within GFF294 at 292.290 kb on + strand, within GFF294 at 292.290 kb on + strand, within GFF294 at 292.290 kb on - strand, within GFF294 at 292.290 kb on - strand, within GFF294 at 292.298 kb on - strand, within GFF294 at 292.298 kb on - strand, within GFF294 at 292.298 kb on - strand, within GFF294 at 292.298 kb on - strand, within GFF294 at 292.298 kb on - strand, within GFF294 at 292.300 kb on + strand, within GFF294 at 292.300 kb on + strand, within GFF294 at 292.303 kb on - strand, within GFF294 at 292.304 kb on + strand, within GFF294 at 292.308 kb on - strand, within GFF294 at 292.308 kb on - strand, within GFF294 at 292.312 kb on - strand, within GFF294 at 292.312 kb on - strand, within GFF294 at 292.312 kb on - strand, within GFF294 at 292.317 kb on - strand, within GFF294 at 292.326 kb on + strand, within GFF294 at 292.326 kb on + strand, within GFF294 at 292.326 kb on + strand, within GFF294 at 292.326 kb on + strand, within GFF294 at 292.326 kb on + strand, within GFF294 at 292.326 kb on + strand, within GFF294 at 292.334 kb on - strand, within GFF294 at 292.334 kb on - strand, within GFF294 at 292.334 kb on - strand, within GFF294 at 292.334 kb on - strand, within GFF294 at 292.334 kb on - strand, within GFF294 at 292.353 kb on - strand, within GFF294 at 292.353 kb on - strand, within GFF294 at 292.370 kb on + strand, within GFF294 at 292.393 kb on + strand, within GFF294 at 292.394 kb on + strand, within GFF294 at 292.401 kb on - strand, within GFF294 at 292.420 kb on + strand, within GFF294 at 292.432 kb on + strand, within GFF294 at 292.432 kb on + strand, within GFF294 at 292.437 kb on + strand, within GFF294 at 292.437 kb on + strand, within GFF294 at 292.447 kb on + strand, within GFF294 at 292.456 kb on + strand, within GFF294 at 292.465 kb on - strand, within GFF294 at 292.532 kb on + strand, within GFF294 at 292.553 kb on + strand, within GFF294 at 292.589 kb on + strand, within GFF294 at 292.613 kb on + strand, within GFF294 at 292.613 kb on + strand, within GFF294 at 292.626 kb on + strand, within GFF294 at 292.636 kb on + strand, within GFF294 at 292.644 kb on - strand, within GFF294 at 292.645 kb on + strand, within GFF294 at 292.646 kb on + strand, within GFF294 at 292.656 kb on + strand, within GFF294 at 292.672 kb on - strand, within GFF294 at 292.677 kb on + strand, within GFF294 at 292.685 kb on - strand, within GFF294 at 292.685 kb on - strand, within GFF294 at 292.687 kb on + strand, within GFF294 at 292.695 kb on - strand, within GFF294 at 292.695 kb on - strand, within GFF294 at 292.696 kb on + strand, within GFF294 at 292.709 kb on + strand, within GFF294 at 292.713 kb on + strand, within GFF294 at 292.726 kb on - strand, within GFF294 at 292.726 kb on - strand, within GFF294 at 292.736 kb on - strand, within GFF294 at 292.747 kb on + strand, within GFF294 at 292.755 kb on - strand, within GFF294 at 292.755 kb on - strand, within GFF294 at 292.763 kb on + strand, within GFF294 at 292.775 kb on - strand, within GFF294 at 292.777 kb on - strand, within GFF294 at 292.806 kb on - strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.828 kb on + strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.836 kb on - strand, within GFF294 at 292.838 kb on + strand, within GFF294 at 292.839 kb on + strand, within GFF294 at 292.887 kb on - strand, within GFF294 at 292.902 kb on - strand, within GFF294 at 292.902 kb on - strand, within GFF294 at 292.907 kb on - strand, within GFF294 at 292.911 kb on + strand, within GFF294 at 292.913 kb on + strand, within GFF294 at 292.919 kb on - strand, within GFF294 at 292.921 kb on - strand, within GFF294 at 292.921 kb on - strand, within GFF294 at 292.921 kb on - strand, within GFF294 at 292.921 kb on - strand, within GFF294 at 292.923 kb on + strand, within GFF294 at 292.923 kb on + strand, within GFF294 at 292.923 kb on + strand, within GFF294 at 292.923 kb on + strand, within GFF294 at 292.923 kb on + strand, within GFF294 at 292.926 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.931 kb on - strand, within GFF294 at 292.933 kb on + strand, within GFF294 at 292.950 kb on + strand, within GFF294 at 292.960 kb on + strand, within GFF294 at 292.973 kb on - strand, within GFF294 at 292.992 kb on - strand, within GFF294 at 292.997 kb on - strand, within GFF294
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 290,648 + GFF292 0.89 -0.3 290,651 - GFF292 0.89 -0.6 290,656 + GFF292 0.89 -0.5 290,677 + GFF292 0.90 -0.6 290,687 + GFF292 0.90 +0.8 290,687 + GFF292 0.90 -0.6 290,692 + GFF292 0.90 +2.0 290,695 - +1.2 290,695 - -0.0 290,695 - +0.4 290,697 + +1.6 290,705 - -0.4 290,705 - -1.6 290,705 - -0.7 290,730 + +1.1 290,731 + -1.2 290,738 - -0.9 290,738 - -1.6 290,739 - +0.2 290,771 + +0.6 290,771 + +1.2 290,771 + -1.5 290,771 + -0.1 290,771 + -1.3 290,771 + -0.6 290,771 + +0.9 290,771 + +0.7 290,771 + -0.6 290,771 + +0.2 290,779 - -1.0 290,779 - -0.3 290,779 - -0.8 290,779 - -0.3 290,781 + -0.6 290,781 + +0.4 290,781 + -0.8 290,782 + -0.3 290,782 + -0.9 290,789 - -0.6 290,789 - +1.5 290,789 - -0.9 290,789 - -0.6 290,790 - -1.3 290,790 - -0.3 290,792 + +0.1 290,792 + +0.4 290,797 + +1.9 290,797 - +0.0 290,799 + +1.0 290,800 - -0.7 290,800 - -0.8 290,805 - -0.6 290,823 - +1.8 290,841 + +0.4 290,841 + -0.5 290,841 + +0.3 290,841 + -0.7 290,841 + -0.9 290,841 + +0.6 290,859 - +1.4 290,859 - -0.6 290,869 - -0.1 290,883 + +1.9 290,883 + -1.1 290,884 + -0.9 290,891 - +0.9 290,894 + -0.3 290,894 + -0.8 290,897 - +1.9 290,902 - +1.4 290,907 + -0.6 290,916 + -1.8 290,916 + -0.3 290,924 - -0.0 290,936 - -0.6 290,945 - -0.5 290,945 - -0.0 290,952 - +0.7 290,961 - -0.5 290,961 - -0.5 291,011 + +0.3 291,213 - +1.7 291,324 + +0.4 291,324 + +0.1 291,332 - +1.3 291,332 - +1.1 291,332 - -0.5 291,446 + +0.7 291,509 + +0.4 291,514 + -1.0 291,554 - -0.3 291,556 + +0.3 291,556 + +0.6 291,556 - +0.1 291,564 - -1.7 291,651 + +0.9 291,687 - GFF293 0.11 -0.9 291,782 - GFF293 0.38 -1.1 291,811 + GFF293 0.46 +1.7 291,873 + GFF293 0.63 +1.4 291,918 + GFF293 0.76 -0.9 291,925 - GFF293 0.78 +0.3 291,965 - GFF293 0.89 +0.1 291,994 + -1.8 291,994 + +0.9 292,002 - -1.0 292,002 - +0.2 292,010 + +0.3 292,068 - +1.3 292,082 + +0.9 292,101 + -0.9 292,109 - +2.2 292,109 - -0.8 292,109 - +1.8 292,119 + -0.9 292,119 + +1.7 292,119 + -1.1 292,127 - +1.6 292,132 - -0.6 292,141 + +0.4 292,150 - -0.6 292,155 - +0.6 292,183 + GFF294 0.11 +1.1 292,189 - GFF294 0.12 +2.4 292,191 - GFF294 0.12 +0.3 292,213 + GFF294 0.13 +1.5 292,221 - GFF294 0.14 -0.8 292,248 - GFF294 0.16 +0.6 292,248 - GFF294 0.16 -0.4 292,249 + GFF294 0.16 +0.4 292,249 + GFF294 0.16 -0.7 292,249 + GFF294 0.16 -1.4 292,249 + GFF294 0.16 -1.1 292,249 + GFF294 0.16 -0.3 292,249 + GFF294 0.16 +1.4 292,249 + GFF294 0.16 -0.1 292,249 + GFF294 0.16 +1.5 292,249 + GFF294 0.16 +0.6 292,254 + GFF294 0.16 +0.7 292,258 - GFF294 0.16 -0.7 292,282 + GFF294 0.18 -0.6 292,282 + GFF294 0.18 -1.2 292,282 + GFF294 0.18 +0.1 292,282 + GFF294 0.18 +2.2 292,282 + GFF294 0.18 +1.4 292,282 + GFF294 0.18 +0.3 292,283 + GFF294 0.18 +0.6 292,290 + GFF294 0.18 -1.6 292,290 + GFF294 0.18 +0.2 292,290 + GFF294 0.18 +0.4 292,290 + GFF294 0.18 +1.4 292,290 - GFF294 0.18 -0.6 292,290 - GFF294 0.18 -0.5 292,298 - GFF294 0.19 -1.6 292,298 - GFF294 0.19 -0.1 292,298 - GFF294 0.19 -1.1 292,298 - GFF294 0.19 -1.7 292,298 - GFF294 0.19 +1.4 292,300 + GFF294 0.19 +0.4 292,300 + GFF294 0.19 -0.4 292,303 - GFF294 0.19 +0.1 292,304 + GFF294 0.19 -0.6 292,308 - GFF294 0.19 +1.3 292,308 - GFF294 0.19 -0.4 292,312 - GFF294 0.20 +0.1 292,312 - GFF294 0.20 +0.3 292,312 - GFF294 0.20 -0.9 292,317 - GFF294 0.20 +0.6 292,326 + GFF294 0.21 -0.0 292,326 + GFF294 0.21 -0.5 292,326 + GFF294 0.21 +0.8 292,326 + GFF294 0.21 +0.1 292,326 + GFF294 0.21 +1.2 292,326 + GFF294 0.21 -0.3 292,334 - GFF294 0.21 +0.6 292,334 - GFF294 0.21 +0.7 292,334 - GFF294 0.21 -0.6 292,334 - GFF294 0.21 +0.9 292,334 - GFF294 0.21 -0.4 292,353 - GFF294 0.22 -0.8 292,353 - GFF294 0.22 -1.0 292,370 + GFF294 0.23 -0.9 292,393 + GFF294 0.25 +0.1 292,394 + GFF294 0.25 +1.1 292,401 - GFF294 0.25 -0.2 292,420 + GFF294 0.27 -1.0 292,432 + GFF294 0.27 +1.1 292,432 + GFF294 0.27 -0.5 292,437 + GFF294 0.28 -1.7 292,437 + GFF294 0.28 -0.6 292,447 + GFF294 0.28 +0.6 292,456 + GFF294 0.29 +0.7 292,465 - GFF294 0.30 -0.7 292,532 + GFF294 0.34 -0.3 292,553 + GFF294 0.35 -0.4 292,589 + GFF294 0.38 -0.7 292,613 + GFF294 0.39 -1.9 292,613 + GFF294 0.39 +0.7 292,626 + GFF294 0.40 +0.1 292,636 + GFF294 0.41 -0.0 292,644 - GFF294 0.41 -0.1 292,645 + GFF294 0.41 +0.1 292,646 + GFF294 0.41 +2.3 292,656 + GFF294 0.42 +0.1 292,672 - GFF294 0.43 +0.1 292,677 + GFF294 0.43 -0.6 292,685 - GFF294 0.44 +0.3 292,685 - GFF294 0.44 -0.7 292,687 + GFF294 0.44 +1.7 292,695 - GFF294 0.44 -1.7 292,695 - GFF294 0.44 +0.4 292,696 + GFF294 0.44 +1.2 292,709 + GFF294 0.45 +0.1 292,713 + GFF294 0.45 -0.6 292,726 - GFF294 0.46 +0.7 292,726 - GFF294 0.46 +0.4 292,736 - GFF294 0.47 -0.5 292,747 + GFF294 0.48 -0.8 292,755 - GFF294 0.48 +0.7 292,755 - GFF294 0.48 -0.7 292,763 + GFF294 0.49 +0.2 292,775 - GFF294 0.49 -1.3 292,777 - GFF294 0.50 +0.1 292,806 - GFF294 0.51 -1.6 292,828 + GFF294 0.53 +0.6 292,828 + GFF294 0.53 +1.9 292,828 + GFF294 0.53 +0.7 292,828 + GFF294 0.53 +2.1 292,828 + GFF294 0.53 -0.3 292,828 + GFF294 0.53 +1.4 292,828 + GFF294 0.53 -0.3 292,828 + GFF294 0.53 -0.4 292,828 + GFF294 0.53 +0.4 292,828 + GFF294 0.53 -2.2 292,828 + GFF294 0.53 -0.6 292,836 - GFF294 0.53 +0.4 292,836 - GFF294 0.53 +1.6 292,836 - GFF294 0.53 +1.0 292,836 - GFF294 0.53 -0.4 292,836 - GFF294 0.53 +0.3 292,836 - GFF294 0.53 -0.3 292,836 - GFF294 0.53 -0.5 292,836 - GFF294 0.53 +0.8 292,836 - GFF294 0.53 -0.3 292,838 + GFF294 0.54 -0.1 292,839 + GFF294 0.54 +0.8 292,887 - GFF294 0.57 -0.6 292,902 - GFF294 0.58 -1.3 292,902 - GFF294 0.58 +1.1 292,907 - GFF294 0.58 -0.6 292,911 + GFF294 0.58 -0.5 292,913 + GFF294 0.58 +0.4 292,919 - GFF294 0.59 +0.1 292,921 - GFF294 0.59 -0.2 292,921 - GFF294 0.59 -0.9 292,921 - GFF294 0.59 +0.4 292,921 - GFF294 0.59 -1.1 292,923 + GFF294 0.59 -0.0 292,923 + GFF294 0.59 -0.1 292,923 + GFF294 0.59 +0.4 292,923 + GFF294 0.59 -0.4 292,923 + GFF294 0.59 -0.6 292,926 - GFF294 0.59 +0.6 292,931 - GFF294 0.60 -1.1 292,931 - GFF294 0.60 +1.1 292,931 - GFF294 0.60 +0.3 292,931 - GFF294 0.60 +0.7 292,931 - GFF294 0.60 -1.4 292,931 - GFF294 0.60 -0.8 292,931 - GFF294 0.60 +0.4 292,931 - GFF294 0.60 -1.5 292,931 - GFF294 0.60 +0.4 292,931 - GFF294 0.60 +1.7 292,931 - GFF294 0.60 -0.0 292,933 + GFF294 0.60 +0.1 292,950 + GFF294 0.61 +0.1 292,960 + GFF294 0.61 -1.0 292,973 - GFF294 0.62 -0.6 292,992 - GFF294 0.63 -1.1 292,997 - GFF294 0.64 -0.5
Or see this region's nucleotide sequence